Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013396

Physical Location & Seq

Genomic Coordinates Reverse (-)

2884954 .. 2886917

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCAGCTGCAAACTGCTTCAAGCATGGAACAATTCTACCAGTCTCGGCCAATCTCCAGCACAAGCAGCTACCACCAAGAAACAGCTGCACCATAAACAATGAGCTCAAGGGAAACAGAAACATGATGCTTATGATGGGTTTGAGTGGAAGACATGGTAAAGCATCCAAACGTGTTGGGATGATAAGGTGCAGTGGGAGAAGTATAGAGGACTTCATAGGAGGAGACTTGGTGAAATTTGATCTCGGCCGTTGGCTTTCGGACGTGGAGGAGCACAAGGCCCTGGCTGTCTACTCTCCCCATGAGGGAGGCTACGAGGGCCGCTATCTTAACCGCCTGAGATACCAAGGTTACTATTTCCTGGACCTTAGTGCCCGAGGCCTCGGTGATCCTGAGACCACCCTCACCAAGGTCCATCCTGTTTGCCCGCCTCATCTAGGGAAGCAGCCCATATCAAGGTGGTACTTTCCACCAGAGGTTGATTACAGGCTTGCCGCCCTGCCTCCAAAGGCCAAAGGCCTTGTGGTCTGGATTATTGAAGCCAAGGTTCTGTCAAAGGCAGAGCTGCAGTTTCTTGCTCTGCTTCCCACACTCCGGCCCAAGGTCAGGGTCATTGCCGAATGCGGAAACTGGAGGAAATTTGTATGGAAACCACTCGAAGAAATTTCAGGATTAACTGCTAATGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071840 GO:0098542 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhN

Protein Analysis

231

Amino Acids

25.82

Weight (kDa)

9.53

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58260 AT5G58260
fragaria_vesca	FvH4_3g41140
malus_domestica	MD03G1047200.v1.1 MD11G1049700.v1.1
prunus_persica	Prupe.6G038400_v2.0.a1
pyrus_communis	pycom03g03720 pycom11g04030
rosa_chinensis	RchiOBHm_Chr5g0073911
rosa_laevigata	RLG00000036424
rosa_multiflora	Rmu_sc0000470.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007460
rosa_rugosa	Rorug05G0427300
rosa_samantha	Rh5AG484300 Rh5BG505000 Rh5CG528800 Rh5DG517300
rosa_wichuraiana	Rw5G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	5 cut(s)	322, 334, 428, 495, 624
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	2 cut(s)	48, 247
AcsI	RAATTY	3 cut(s)	236, 638, 663
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	7 cut(s)	305, 409, 437, 456, 594, 601, 606
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	22, 539
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	282, 360
AluBI	AGCT	5 cut(s)	8, 70, 87, 106, 565
AluI	AGCT	5 cut(s)	8, 70, 87, 106, 565
Alw21I	GWGCWC	2 cut(s)	108, 276
Alw26I	GTCTC	3 cut(s)	49, 219, 389
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	8 cut(s)	48, 247, 279, 319, 379, 510, 517, 596
ApeKI	GCWGC	6 cut(s)	5, 8, 67, 87, 445, 565
ApoI	RAATTY	3 cut(s)	236, 638, 663
AspS9I	GGNCC	5 cut(s)	280, 319, 364, 412, 597
AsuHPI	GGTGA	3 cut(s)	244, 397, 398
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	2 cut(s)	364, 412
BaeGI	GKGCMC	1 cut(s)	376
BaeI	ACNNNNGTAYC	2 cut(s)	334, 367
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	2 cut(s)	108, 276
BbvI	GCAGC	5 cut(s)	17, 74, 79, 457, 552
BccI	CCATC	2 cut(s)	130, 423
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	284, 362
BcoDI	GTCTC	3 cut(s)	49, 219, 389
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	566
BisI	GCNGC	8 cut(s)	6, 9, 68, 88, 322, 446, 495, 566
BlsI	GCNGC	8 cut(s)	7, 10, 69, 89, 323, 447, 496, 567
Bme1390I	CCNGG	2 cut(s)	284, 362
Bme18I	GGWCC	2 cut(s)	364, 412
BmeT110I	CYCGRG	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	5 cut(s)	280, 319, 364, 412, 597
BmrFI	CCNGG	2 cut(s)	284, 362
BmsI	GCATC	2 cut(s)	117, 173
BpiI	GAAGAC	1 cut(s)	157
BpmI	CTGGAG	2 cut(s)	41, 652
BpuEI	CTTGAG	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	7 cut(s)	282, 346, 376, 382, 408, 543, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	7 cut(s)	305, 409, 437, 456, 594, 601, 606
Bse1I	ACTGG	2 cut(s)	41, 635
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	284, 362
BseDI	CCNNGG	7 cut(s)	282, 346, 376, 382, 408, 543, 600
BseGI	GGATG	3 cut(s)	164, 186, 415
BseLI	CCNNNNNNNGG	7 cut(s)	305, 409, 437, 456, 594, 601, 606
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	329, 384
BseNI	ACTGG	2 cut(s)	41, 635
BseRI	GAGGAG	2 cut(s)	237, 284
BseSI	GKGCMC	1 cut(s)	376
BseX3I	CGGCCG	1 cut(s)	247
BseXI	GCAGC	5 cut(s)	17, 74, 79, 457, 552
BsgI	GTGCAG	2 cut(s)	73, 211
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	8 cut(s)	50, 249, 281, 321, 381, 512, 519, 598
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	108, 276
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	595
BslI	CCNNNNNNNGG	7 cut(s)	305, 409, 437, 456, 594, 601, 606
BsmAI	GTCTC	3 cut(s)	49, 219, 389
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	8 cut(s)	50, 249, 281, 321, 381, 512, 519, 598
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	108, 276, 376
Bsp143I	GATC	2 cut(s)	241, 388
BspACI	CCGC	5 cut(s)	322, 334, 428, 495, 624
BspANI	GGCC	8 cut(s)	50, 249, 281, 321, 381, 512, 519, 598
BspCNI	CTCAG	2 cut(s)	330, 385
BspMAI	CTGCAG	1 cut(s)	570
BspPI	GGATC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	41, 635
BssECI	CCNNGG	7 cut(s)	282, 346, 376, 382, 408, 543, 600
BssMI	GATC	2 cut(s)	241, 388
BssT1I	CCWWGG	4 cut(s)	346, 408, 543, 600
Bst2UI	CCWGG	2 cut(s)	284, 362
BstC8I	GCNNGC	2 cut(s)	428, 492
BstDEI	CTNAG	3 cut(s)	338, 368, 393
BstENI	CCTNNNNNAGG	2 cut(s)	407, 435
BstF5I	GGATG	3 cut(s)	164, 186, 415
BstKTI	GATC	2 cut(s)	244, 391
BstMAI	GTCTC	3 cut(s)	49, 219, 389
BstMBI	GATC	2 cut(s)	241, 388
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 318
BstNI	CCWGG	2 cut(s)	284, 362
BstSCI	CCNGG	2 cut(s)	282, 360
BstSFI	CTRYAG	1 cut(s)	566
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	5 cut(s)	17, 74, 79, 457, 552
BstV2I	GAAGAC	1 cut(s)	157
BstZI	CGGCCG	1 cut(s)	247
BsuRI	GGCC	8 cut(s)	50, 249, 281, 321, 381, 512, 519, 598
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	164, 186, 415
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	428, 492
Cfr13I	GGNCC	5 cut(s)	280, 319, 364, 412, 597
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	4 cut(s)	26, 124, 155, 302
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	338, 368, 393
DpnI	GATC	2 cut(s)	243, 390
DpnII	GATC	2 cut(s)	241, 388
EaeI	YGGCCR	2 cut(s)	48, 247
EagI	CGGCCG	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	247
Eco130I	CCWWGG	4 cut(s)	346, 408, 543, 600
Eco147I	AGGCCT	2 cut(s)	381, 519
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	364, 412
Eco52I	CGGCCG	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	2 cut(s)	407, 435
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	282, 360
EcoT14I	CCWWGG	4 cut(s)	346, 408, 543, 600
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	4 cut(s)	346, 408, 543, 600
FaeI	CATG	4 cut(s)	29, 127, 158, 305
FatI	CATG	4 cut(s)	25, 123, 154, 301
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	8 cut(s)	6, 9, 68, 88, 322, 446, 495, 566
FokI	GGATG	3 cut(s)	151, 193, 402
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	8 cut(s)	6, 9, 68, 88, 322, 446, 495, 566
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	8 cut(s)	6, 9, 68, 88, 322, 446, 495, 566
GsuI	CTGGAG	2 cut(s)	41, 652
HaeIII	GGCC	8 cut(s)	50, 249, 281, 321, 381, 512, 519, 598
HapII	CCGG	1 cut(s)	595
Hin1II	CATG	4 cut(s)	29, 127, 158, 305
HpaII	CCGG	1 cut(s)	595
HphI	GGTGA	3 cut(s)	244, 397, 398
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	3 cut(s)	392, 529, 669
Hpy8I	GTNNAC	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	172, 264
HpyCH4V	TGCA	4 cut(s)	11, 90, 192, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 318
HpyF3I	CTNAG	3 cut(s)	338, 368, 393
HpySE526I	ACGT	2 cut(s)	172, 264
Hsp92II	CATG	4 cut(s)	29, 127, 158, 305
Kzo9I	GATC	2 cut(s)	241, 388
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	5 cut(s)	17, 74, 79, 457, 552
LweI	GCATC	2 cut(s)	117, 173
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	172, 264
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	243, 390
MboI	GATC	2 cut(s)	241, 388
MboII	GAAGA	2 cut(s)	162, 671
MhlI	GDGCHC	3 cut(s)	108, 276, 376
MluCI	AATT	4 cut(s)	33, 236, 638, 663
MseI	TTAA	2 cut(s)	330, 674
MspA1I	CMGCKG	2 cut(s)	8, 87
MspI	CCGG	1 cut(s)	595
MspR9I	CCNGG	2 cut(s)	284, 362
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	2 cut(s)	284, 362
MwoI	GCNNNNNNNGC	2 cut(s)	67, 318
NdeII	GATC	2 cut(s)	241, 388
NlaIII	CATG	4 cut(s)	29, 127, 158, 305
NmeAIII	GCCGAG	2 cut(s)	26, 225
PceI	AGGCCT	2 cut(s)	381, 519
PctI	GAATGC	1 cut(s)	626
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	8 cut(s)	7, 10, 69, 89, 323, 447, 496, 567
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	282, 360
PspGI	CCWGG	2 cut(s)	282, 360
PspPI	GGNCC	5 cut(s)	280, 319, 364, 412, 597
PstI	CTGCAG	1 cut(s)	570
PvuII	CAGCTG	2 cut(s)	8, 87
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	330, 674
SatI	GCNGC	8 cut(s)	6, 9, 68, 88, 322, 446, 495, 566
Sau3AI	GATC	2 cut(s)	241, 388
Sau96I	GGNCC	5 cut(s)	280, 319, 364, 412, 597
ScrFI	CCNGG	2 cut(s)	284, 362
SduI	GDGCHC	3 cut(s)	108, 276, 376
SfaNI	GCATC	2 cut(s)	117, 173
SfcI	CTRYAG	1 cut(s)	566
SinI	GGWCC	2 cut(s)	364, 412
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	33, 236, 638, 663
SseBI	AGGCCT	2 cut(s)	381, 519
SsiI	CCGC	5 cut(s)	322, 334, 428, 495, 624
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	2 cut(s)	381, 519
StyD4I	CCNGG	2 cut(s)	282, 360
StyI	CCWWGG	4 cut(s)	346, 408, 543, 600
TaiI	ACGT	2 cut(s)	175, 267
TaqI	TCGA	1 cut(s)	657
TasI	AATT	4 cut(s)	33, 236, 638, 663
TauI	GCSGC	2 cut(s)	324, 497
Tru1I	TTAA	2 cut(s)	330, 674
Tru9I	TTAA	2 cut(s)	330, 674
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	6 cut(s)	5, 8, 67, 87, 445, 565
TspDTI	ATGAA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	364, 412
XagI	CCTNNNNNAGG	2 cut(s)	407, 435
XapI	RAATTY	3 cut(s)	236, 638, 663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.