Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013396

Physical Location & Seq

Genomic Coordinates Reverse (-)

9552675 .. 9554206

Gene Structure 1532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCAACGGCTGCAAATTGCTTGAGGCATGGAACTGTACCAGTCTCGGCCAACCTCCAGCACCAGCTGCCTCGAAGAAACAACTGCATGGTAAACATGGCGGGGAACAGAAACGTGAAGCTGATGGGTGGACATGGCAAAGCATCCAGGAGGAGTGGGATGATAACGTGTGCAGGGAGGGAGATAGCAGACTTCATAGGAGGGGATTTGGTGAGATTTGATCTGGGACAGTGGCTTTCCGATGTGGAAGAGCACAAGGCCCTCGCAGTCTACTCACCCCACGAGGGAGGCTACGAGGGCCGCTACCTTAACCGATTGACATACCAGGGTTACTATTTCCTGGACCTCAGCGCCCGAGGTCTTGGTGATCCTGAGACCACTCTCACCAAGGTCCATCCAGTTTGCCCGGCACATCTAGGGAAGCAGCCGATAGCAAGATGGTATTTTCCACCAGAGGTTGATTATAGGCTTGCTGCGCTGCCTCCAAAGGCCAAAGGGCTTGTGGTCTGGATTATTGAAGCCAAGGTTCTGTCAAAGGCAGAATTGCAGTTTCTTGCGCTCCTTCCAACCCTCCGCCCCAAAGTCAGGGTCATTGCTGAGTGCGGAAACTGGAGAAGATTCGTGTGGAAGCCACTCAAGGAGATTTCGGGACTAACTGAAAAACAAGAAATAGGCAAGAATTTTCACCCTCAACAGTCGTTTAGCAGTGCTGCATTCTGCCGGATTTCATGTCAAAGCACAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071840 GO:0098542 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhN

Protein Analysis

248

Amino Acids

27.72

Weight (kDa)

9.45

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhN	PF11909	77 - 214	6.8e-55	NADH-quinone oxidoreductase cyanobacterial subunit N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58260 AT5G58260
fragaria_vesca	FvH4_3g41140
malus_domestica	MD03G1047200.v1.1 MD11G1049700.v1.1
prunus_persica	Prupe.6G038400_v2.0.a1
pyrus_communis	pycom03g03720 pycom11g04030
rosa_chinensis	RchiOBHm_Chr5g0073911
rosa_laevigata	RLG00000036424
rosa_multiflora	Rmu_sc0000470.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007460
rosa_rugosa	Rorug05G0427300
rosa_samantha	Rh5AG484300 Rh5BG505000 Rh5CG528800 Rh5DG517300
rosa_wichuraiana	Rw5G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	4 cut(s)	101, 301, 574, 603
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	679
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	284, 585
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	3 cut(s)	146, 324, 339
AluBI	AGCT	2 cut(s)	67, 121
AluI	AGCT	2 cut(s)	67, 121
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	2 cut(s)	49, 368
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	4 cut(s)	48, 258, 298, 489
ApeKI	GCWGC	6 cut(s)	11, 67, 424, 473, 478, 710
ApoI	RAATTY	1 cut(s)	679
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AspLEI	GCGC	3 cut(s)	353, 478, 559
AspS9I	GGNCC	4 cut(s)	259, 298, 343, 391
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	5 cut(s)	223, 267, 376, 377, 677
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	2 cut(s)	343, 391
BauI	CACGAG	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	5 cut(s)	54, 436, 460, 465, 697
BccI	CCATC	3 cut(s)	118, 402, 432
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	148, 326, 341
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	2 cut(s)	49, 368
BfaI	CTAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	7 cut(s)	12, 68, 301, 425, 474, 479, 711
BlsI	GCNGC	7 cut(s)	13, 69, 302, 426, 475, 480, 712
Bme1390I	CCNGG	4 cut(s)	148, 326, 341, 407
Bme18I	GGWCC	2 cut(s)	343, 391
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	4 cut(s)	259, 298, 343, 391
BmrFI	CCNGG	4 cut(s)	148, 326, 341, 407
BmsI	GCATC	1 cut(s)	152
BpmI	CTGGAG	2 cut(s)	41, 631
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	43, 620
BpuMI	CCSGG	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	4 cut(s)	325, 355, 387, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 585
Bse1I	ACTGG	3 cut(s)	41, 398, 614
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	3 cut(s)	148, 326, 341
BseDI	CCNNGG	4 cut(s)	325, 355, 387, 522
BseGI	GGATG	3 cut(s)	143, 165, 394
BseLI	CCNNNNNNNGG	2 cut(s)	284, 585
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	3 cut(s)	361, 363, 588
BseNI	ACTGG	3 cut(s)	41, 398, 614
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	5 cut(s)	54, 436, 460, 465, 697
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	50, 260, 300, 491
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	407, 721
BslFI	GGGAC	2 cut(s)	240, 663
BslI	CCNNNNNNNGG	2 cut(s)	284, 585
BsmAI	GTCTC	2 cut(s)	49, 368
BsmFI	GGGAC	2 cut(s)	240, 663
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	4 cut(s)	50, 260, 300, 491
Bso31I	GGTCTC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	220, 367
BspACI	CCGC	4 cut(s)	101, 301, 574, 603
BspANI	GGCC	4 cut(s)	50, 260, 300, 491
BspCNI	CTCAG	3 cut(s)	360, 364, 589
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	3 cut(s)	41, 398, 614
BssECI	CCNNGG	4 cut(s)	325, 355, 387, 522
BssMI	GATC	2 cut(s)	220, 367
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	387, 522
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	3 cut(s)	148, 326, 341
Bst4CI	ACNGT	3 cut(s)	37, 231, 696
Bst6I	CTCTTC	1 cut(s)	243
BstAPI	GCANNNNNTGC	2 cut(s)	11, 67
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	3 cut(s)	347, 372, 597
BstF5I	GGATG	3 cut(s)	143, 165, 394
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	353, 478, 559
BstKTI	GATC	2 cut(s)	223, 370
BstMAI	GTCTC	2 cut(s)	49, 368
BstMBI	GATC	2 cut(s)	220, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 67, 297, 475
BstNI	CCWGG	3 cut(s)	148, 326, 341
BstSCI	CCNGG	4 cut(s)	146, 324, 339, 405
BstV1I	GCAGC	5 cut(s)	54, 436, 460, 465, 697
BsuRI	GGCC	4 cut(s)	50, 260, 300, 491
BtsCI	GGATG	3 cut(s)	143, 165, 394
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	2 cut(s)	236, 712
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	3 cut(s)	353, 478, 559
Cfr13I	GGNCC	4 cut(s)	259, 298, 343, 391
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	5 cut(s)	29, 88, 97, 134, 729
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	3 cut(s)	347, 372, 597
DpnI	GATC	2 cut(s)	222, 369
DpnII	GATC	2 cut(s)	220, 367
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	387, 522
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	343, 391
Eco88I	CYCGRG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	146, 324, 339
EcoT14I	CCWWGG	2 cut(s)	387, 522
ErhI	CCWWGG	2 cut(s)	387, 522
FaeI	CATG	5 cut(s)	32, 91, 100, 137, 732
FaiI	YATR	8 cut(s)	30, 89, 98, 135, 197, 322, 465, 730
FaqI	GGGAC	2 cut(s)	240, 663
FatI	CATG	5 cut(s)	28, 87, 96, 133, 728
FauI	CCCGC	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	7 cut(s)	12, 68, 301, 425, 474, 479, 711
FokI	GGATG	3 cut(s)	130, 172, 381
Fsp4HI	GCNGC	7 cut(s)	12, 68, 301, 425, 474, 479, 711
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	3 cut(s)	352, 477, 558
GluI	GCNGC	7 cut(s)	12, 68, 301, 425, 474, 479, 711
GsuI	CTGGAG	2 cut(s)	41, 631
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	50, 260, 300, 491
HapII	CCGG	2 cut(s)	407, 721
HhaI	GCGC	3 cut(s)	353, 478, 559
Hin1II	CATG	5 cut(s)	32, 91, 100, 137, 732
Hin6I	GCGC	3 cut(s)	351, 476, 557
HinP1I	GCGC	3 cut(s)	351, 476, 557
HinfI	GANTC	1 cut(s)	618
HpaII	CCGG	2 cut(s)	407, 721
HphI	GGTGA	5 cut(s)	223, 267, 376, 377, 677
Hpy166II	GTNNAC	3 cut(s)	94, 131, 271
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	3 cut(s)	371, 508, 648
Hpy8I	GTNNAC	3 cut(s)	94, 131, 271
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	3 cut(s)	37, 231, 696
HpyCH4IV	ACGT	2 cut(s)	114, 167
HpyCH4V	TGCA	5 cut(s)	14, 87, 173, 547, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 67, 297, 475
HpyF3I	CTNAG	3 cut(s)	347, 372, 597
HpySE526I	ACGT	2 cut(s)	114, 167
Hsp92II	CATG	5 cut(s)	32, 91, 100, 137, 732
HspAI	GCGC	3 cut(s)	351, 476, 557
Kzo9I	GATC	2 cut(s)	220, 367
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	564
Lsp1109I	GCAGC	5 cut(s)	54, 436, 460, 465, 697
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	2 cut(s)	114, 167
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	222, 369
MboI	GATC	2 cut(s)	220, 367
MboII	GAAGA	3 cut(s)	87, 260, 627
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	3 cut(s)	16, 542, 679
MmeI	TCCRAC	1 cut(s)	590
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	407, 721
MspR9I	CCNGG	4 cut(s)	148, 326, 341, 407
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	3 cut(s)	148, 326, 341
MwoI	GCNNNNNNNGC	4 cut(s)	11, 67, 297, 475
NciI	CCSGG	1 cut(s)	407
NdeII	GATC	2 cut(s)	220, 367
NlaIII	CATG	5 cut(s)	32, 91, 100, 137, 732
NmeAIII	GCCGAG	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	618
PfoI	TCCNGGA	2 cut(s)	146, 339
PkrI	GCNGC	7 cut(s)	13, 69, 302, 426, 475, 480, 712
Psp6I	CCWGG	3 cut(s)	146, 324, 339
PspGI	CCWGG	3 cut(s)	146, 324, 339
PspPI	GGNCC	4 cut(s)	259, 298, 343, 391
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	7 cut(s)	12, 68, 301, 425, 474, 479, 711
Sau3AI	GATC	2 cut(s)	220, 367
Sau96I	GGNCC	4 cut(s)	259, 298, 343, 391
ScrFI	CCNGG	4 cut(s)	148, 326, 341, 407
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	152
SinI	GGWCC	2 cut(s)	343, 391
SmlI	CTYRAG	2 cut(s)	22, 635
SmoI	CTYRAG	2 cut(s)	22, 635
Sse9I	AATT	3 cut(s)	16, 542, 679
SsiI	CCGC	4 cut(s)	101, 301, 574, 603
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	146, 324, 339, 405
StyI	CCWWGG	2 cut(s)	387, 522
TaaI	ACNGT	3 cut(s)	37, 231, 696
TaiI	ACGT	2 cut(s)	117, 170
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	16, 542, 679
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	618
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	236, 712
TseI	GCWGC	6 cut(s)	11, 67, 424, 473, 478, 710
TspDTI	ATGAA	2 cut(s)	184, 717
TspRI	CASTG	2 cut(s)	236, 712
VpaK11BI	GGWCC	2 cut(s)	343, 391
XapI	RAATTY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.