RchiOBHm_Chr5g0073911

NAD(P)H-quinone oxidoreductase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013396
Physical Location & Seq
Forward (+)
79940906 .. 79942363
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34877

Sequence Viewer

Length: 672 bp
ATGGCAACGGCTGCAAATTGCTTAAGGCATGGAACTGTACCAGTCTCGGCCAACCTCCAGCACCAGCAGCCTCGAAGAAACAACTGCATGGTAAACATGGCGGGAAACAGAAACATGAAGCTGATGGGTGGACATGGCAAAGCATCCAAGAGGAGTGGGATGATAACGTGTGCAGGGAGGGAGATAGCAGACTTCATAGGAGGGGATTTGGTGAGATTTGATCTGGGACAGTGGCTTTCCGATGTGGAAGAGCACAAGGCCCTCGCAGTCTACTCACCCCACGAGGGAGGCTACGAGGGCCGCTACCTTAACCGATTGACATACCAGGGTTACTATTTCCTGGACCTCAGCGCCCGAGGTCTTGGTGATCCTGAGACCACTCTCACCAAGGTCCATCCAGTTTGCCCGGCACATTTAGGGAAGCAGCCGATAGCAAGATGGTATTTTCCACCAGAGGTTGATTATAGGCTTGCTGCGCTGCCTCCAAAGGCCAAAGGGCTTGTGGTCTGGATTATTGAAGCCAAGGTTCTGTCAAAGGCAGAATTGCAGTTTCTTGCGCTCCTTCCAACCCTCCGCCCCAAAGTCAGGGTCATTGCTGAGTGCGGAAACTGGAGAAGATTCGTGTGGAAGCCACTCAAGGAGATTTCGGGACTAACTGAAAGTGAGGAATGA

Protein Analysis

223

Amino Acids

24.94

Weight (kDa)

9.32

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NdhN PF11909 77 - 214 5.1e-55 NADH-quinone oxidoreductase cyanobacterial subunit N
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58260 AT5G58260
fragaria_vesca FvH4_3g41140
malus_domestica MD03G1047200.v1.1 MD11G1049700.v1.1
prunus_persica Prupe.6G038400_v2.0.a1
pyrus_communis pycom03g03720 pycom11g04030
rosa_chinensis RchiOBHm_Chr5g0073911
rosa_laevigata RLG00000036424
rosa_multiflora Rmu_sc0000470.1_g000017
rosa_roxburghii Rroxscaffold_1G00007460
rosa_rugosa Rorug05G0427300
rosa_samantha Rh5AG484300 Rh5BG505000 Rh5CG528800 Rh5DG517300
rosa_wichuraiana Rw5G045020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AciI CCGC 4 cut(s) 101, 301, 574, 603
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 48
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 284, 585
AflII CTTAAG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 518
AjnI CCWGG 2 cut(s) 324, 339
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 49, 368
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 4 cut(s) 48, 258, 298, 489
ApeKI GCWGC 5 cut(s) 11, 67, 424, 473, 478
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
AspLEI GCGC 3 cut(s) 353, 478, 559
AspS9I GGNCC 4 cut(s) 259, 298, 343, 391
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 4 cut(s) 223, 267, 376, 377
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 2 cut(s) 343, 391
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 4 cut(s) 79, 436, 460, 465
BccI CCATC 3 cut(s) 118, 402, 432
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 2 cut(s) 326, 341
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 49, 368
BfoI RGCGCY 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 22
BisI GCNGC 6 cut(s) 12, 68, 301, 425, 474, 479
BlsI GCNGC 6 cut(s) 13, 69, 302, 426, 475, 480
Bme1390I CCNGG 3 cut(s) 326, 341, 407
Bme18I GGWCC 2 cut(s) 343, 391
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 4 cut(s) 259, 298, 343, 391
BmrFI CCNGG 3 cut(s) 326, 341, 407
BmsI GCATC 1 cut(s) 152
BpmI CTGGAG 2 cut(s) 41, 631
Bpu10I CCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 4 cut(s) 325, 355, 387, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 585
Bse1I ACTGG 3 cut(s) 41, 398, 614
Bse3DI GCAATG 1 cut(s) 591
BseBI CCWGG 2 cut(s) 326, 341
BseDI CCNNGG 4 cut(s) 325, 355, 387, 522
BseGI GGATG 3 cut(s) 143, 165, 394
BseLI CCNNNNNNNGG 2 cut(s) 284, 585
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 3 cut(s) 361, 363, 588
BseNI ACTGG 3 cut(s) 41, 398, 614
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 4 cut(s) 79, 436, 460, 465
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 4 cut(s) 50, 260, 300, 491
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 2 cut(s) 240, 663
BslI CCNNNNNNNGG 2 cut(s) 284, 585
BsmAI GTCTC 2 cut(s) 49, 368
BsmFI GGGAC 2 cut(s) 240, 663
BsnI GGCC 4 cut(s) 50, 260, 300, 491
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 220, 367
BspACI CCGC 4 cut(s) 101, 301, 574, 603
BspANI GGCC 4 cut(s) 50, 260, 300, 491
BspCNI CTCAG 3 cut(s) 360, 364, 589
BspPI GGATC 1 cut(s) 362
BspQI GCTCTTC 1 cut(s) 243
BspTI CTTAAG 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 591
BsrI ACTGG 3 cut(s) 41, 398, 614
BssECI CCNNGG 4 cut(s) 325, 355, 387, 522
BssMI GATC 2 cut(s) 220, 367
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 387, 522
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 326, 341
Bst4CI ACNGT 2 cut(s) 37, 231
Bst6I CTCTTC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 3 cut(s) 347, 372, 597
BstF5I GGATG 3 cut(s) 143, 165, 394
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 3 cut(s) 353, 478, 559
BstKTI GATC 2 cut(s) 223, 370
BstMAI GTCTC 2 cut(s) 49, 368
BstMBI GATC 2 cut(s) 220, 367
BstMWI GCNNNNNNNGC 4 cut(s) 11, 67, 297, 475
BstNI CCWGG 2 cut(s) 326, 341
BstSCI CCNGG 3 cut(s) 324, 339, 405
BstV1I GCAGC 4 cut(s) 79, 436, 460, 465
BsuRI GGCC 4 cut(s) 50, 260, 300, 491
BtsCI GGATG 3 cut(s) 143, 165, 394
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 471
CfoI GCGC 3 cut(s) 353, 478, 559
Cfr13I GGNCC 4 cut(s) 259, 298, 343, 391
Csp6I GTAC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 5 cut(s) 29, 88, 97, 115, 134
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 3 cut(s) 347, 372, 597
DpnI GATC 2 cut(s) 222, 369
DpnII GATC 2 cut(s) 220, 367
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 387, 522
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 2 cut(s) 343, 391
Eco88I CYCGRG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 324, 339
EcoT14I CCWWGG 2 cut(s) 387, 522
ErhI CCWWGG 2 cut(s) 387, 522
FaeI CATG 5 cut(s) 32, 91, 100, 118, 137
FaiI YATR 8 cut(s) 30, 89, 98, 116, 135, 197, 322, 465
FaqI GGGAC 2 cut(s) 240, 663
FatI CATG 5 cut(s) 28, 87, 96, 114, 133
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 6 cut(s) 12, 68, 301, 425, 474, 479
FokI GGATG 3 cut(s) 130, 172, 381
Fsp4HI GCNGC 6 cut(s) 12, 68, 301, 425, 474, 479
GlaI GCGC 3 cut(s) 352, 477, 558
GluI GCNGC 6 cut(s) 12, 68, 301, 425, 474, 479
GsuI CTGGAG 2 cut(s) 41, 631
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 4 cut(s) 50, 260, 300, 491
HapII CCGG 1 cut(s) 407
HhaI GCGC 3 cut(s) 353, 478, 559
Hin1II CATG 5 cut(s) 32, 91, 100, 118, 137
Hin6I GCGC 3 cut(s) 351, 476, 557
HinP1I GCGC 3 cut(s) 351, 476, 557
HinfI GANTC 1 cut(s) 618
HpaII CCGG 1 cut(s) 407
HphI GGTGA 4 cut(s) 223, 267, 376, 377
Hpy166II GTNNAC 3 cut(s) 94, 131, 271
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 3 cut(s) 371, 508, 648
Hpy8I GTNNAC 3 cut(s) 94, 131, 271
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 2 cut(s) 37, 231
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 14, 87, 173, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 67, 297, 475
HpyF3I CTNAG 3 cut(s) 347, 372, 597
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 5 cut(s) 32, 91, 100, 118, 137
HspAI GCGC 3 cut(s) 351, 476, 557
Kzo9I GATC 2 cut(s) 220, 367
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 564
Lsp1109I GCAGC 4 cut(s) 79, 436, 460, 465
LweI GCATC 1 cut(s) 152
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 222, 369
MboI GATC 2 cut(s) 220, 367
MboII GAAGA 3 cut(s) 87, 260, 627
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 16, 542
MmeI TCCRAC 1 cut(s) 590
MseI TTAA 2 cut(s) 23, 309
MspCI CTTAAG 1 cut(s) 22
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 3 cut(s) 326, 341, 407
MvaI CCWGG 2 cut(s) 326, 341
MwoI GCNNNNNNNGC 4 cut(s) 11, 67, 297, 475
NciI CCSGG 1 cut(s) 407
NdeII GATC 2 cut(s) 220, 367
NlaIII CATG 5 cut(s) 32, 91, 100, 118, 137
NmeAIII GCCGAG 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 618
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 6 cut(s) 13, 69, 302, 426, 475, 480
Psp6I CCWGG 2 cut(s) 324, 339
PspGI CCWGG 2 cut(s) 324, 339
PspPI GGNCC 4 cut(s) 259, 298, 343, 391
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 23, 309
SatI GCNGC 6 cut(s) 12, 68, 301, 425, 474, 479
Sau3AI GATC 2 cut(s) 220, 367
Sau96I GGNCC 4 cut(s) 259, 298, 343, 391
ScrFI CCNGG 3 cut(s) 326, 341, 407
SduI GDGCHC 1 cut(s) 255
SetI ASST 9 cut(s) 57, 123, 170, 309, 348, 361, 393, 459, 528
SfaNI GCATC 1 cut(s) 152
SinI GGWCC 2 cut(s) 343, 391
SmlI CTYRAG 2 cut(s) 22, 635
SmoI CTYRAG 2 cut(s) 22, 635
Sse9I AATT 2 cut(s) 16, 542
SsiI CCGC 4 cut(s) 101, 301, 574, 603
StyD4I CCNGG 3 cut(s) 324, 339, 405
StyI CCWWGG 2 cut(s) 387, 522
TaaI ACNGT 2 cut(s) 37, 231
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 73
TasI AATT 2 cut(s) 16, 542
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 2 cut(s) 23, 309
Tru9I TTAA 2 cut(s) 23, 309
TscAI CASTG 1 cut(s) 236
TseI GCWGC 5 cut(s) 11, 67, 424, 473, 478
TspDTI ATGAA 2 cut(s) 131, 184
TspRI CASTG 1 cut(s) 236
Vha464I CTTAAG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 343, 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.