Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0013396

Physical Location & Seq

Genomic Coordinates Reverse (-)

4257786 .. 4259213

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1049700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGGCTGCAAACTGCTTCAAGCAAGGAACGAATCTTCCCGTCTCCGCGAATATCCGGCACAAGCAGCCACCGCCTCGAAGCAGCTTCATCGGAAACAATGAGCTGAAGGGAAACAGAAGCATGGTGCTAATGGTGGGATTGTGTGGGGGACATGGAAATGGTAAGGCATCCAAGAGGGCTGGAATGATAAGGTGTGGGAGAGGGATAGAGGACTTCATAGGAGGAGACTTGGTGAGATTTGATCTTGGCCGTTGGCTTTCTGACGTCGAAGAACACAAGGCCCTTGCTGTCTACTCTCCCCATGAAGGAGGGTACGAGGGGCGTTATCTTAACCGCCTGACGTACCAGGGCTACTATTTTCTGGACCTCAGTGCGCGAGGGCTCGGTGATCCTGAGACCACCCTCACCAAGGTCCACCCCGTTTGTCCGCCTCATCTAGGGAAGCAGCCCATATCAAGATGGTACTTCCCACCAGAGGTGGATTACAGGCTCGCCGCTCTGCCTCCAAAGGCCAAAGGCCTTGTAGTCTGGATCATTGAAGCCAAGGTTCTGTCGAAGGCAGAGTTGCAGTTTCTTGCTCTGCTTCCCACCCTCCGTCCCAAAGTCAGGGTCATCGCGGAGTGTGGAAACTGGAGGAAATTTGTGTGGAAGCCACTCAAAGAAATTTCGGGACTAACTGCTAACGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071840 GO:0098542 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhN

Protein Analysis

232

Amino Acids

25.64

Weight (kDa)

9.61

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhN	PF11909	85 - 222	2.3e-55	NADH-quinone oxidoreductase cyanobacterial subunit N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58260 AT5G58260
fragaria_vesca	FvH4_3g41140
malus_domestica	MD03G1047200.v1.1 MD11G1049700.v1.1
prunus_persica	Prupe.6G038400_v2.0.a1
pyrus_communis	pycom03g03720 pycom11g04030
rosa_chinensis	RchiOBHm_Chr5g0073911
rosa_laevigata	RLG00000036424
rosa_multiflora	Rmu_sc0000470.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007460
rosa_rugosa	Rorug05G0427300
rosa_samantha	Rh5AG484300 Rh5BG505000 Rh5CG528800 Rh5DG517300
rosa_wichuraiana	Rw5G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	3 cut(s)	50, 379, 620
AciI	CCGC	7 cut(s)	5, 48, 74, 337, 431, 498, 620
AclWI	GGATC	2 cut(s)	386, 542
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	641, 666
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	3 cut(s)	317, 347, 467
AfiI	CCNNNNNNNGG	5 cut(s)	308, 412, 440, 478, 609
AgsI	TTSAA	2 cut(s)	22, 542
AjnI	CCWGG	1 cut(s)	348
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	2 cut(s)	87, 106
AluI	AGCT	2 cut(s)	87, 106
Alw26I	GTCTC	3 cut(s)	49, 222, 392
AlwI	GGATC	2 cut(s)	386, 542
AoxI	GGCC	4 cut(s)	250, 282, 513, 520
ApeKI	GCWGC	4 cut(s)	8, 67, 84, 448
ApoI	RAATTY	2 cut(s)	641, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	597, 629
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	283, 367, 415
AsuHPI	GGTGA	3 cut(s)	247, 400, 401
AvaII	GGWCC	2 cut(s)	367, 415
BanII	GRGCYC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	79, 96, 460
BccI	CCATC	1 cut(s)	456
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	3 cut(s)	49, 222, 392
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	6 cut(s)	6, 9, 68, 85, 449, 498
BlsI	GCNGC	6 cut(s)	7, 10, 69, 86, 450, 499
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	367, 415
BmgT120I	GGNCC	3 cut(s)	283, 367, 415
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	655
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	349, 411, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 412, 440, 478, 609
Bse1I	ACTGG	1 cut(s)	638
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	349, 411, 546
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	5 cut(s)	308, 412, 440, 478, 609
BseMII	CTCAG	2 cut(s)	385, 387
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	79, 96, 460
Bsh1236I	CGCG	3 cut(s)	50, 379, 620
BshFI	GGCC	4 cut(s)	252, 284, 515, 522
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	3 cut(s)	165, 585, 687
BslI	CCNNNNNNNGG	5 cut(s)	308, 412, 440, 478, 609
BsmAI	GTCTC	3 cut(s)	49, 222, 392
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	3 cut(s)	165, 585, 687
BsnI	GGCC	4 cut(s)	252, 284, 515, 522
Bso31I	GGTCTC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	244, 391, 534
BspACI	CCGC	7 cut(s)	5, 48, 74, 337, 431, 498, 620
BspANI	GGCC	4 cut(s)	252, 284, 515, 522
BspCNI	CTCAG	2 cut(s)	384, 388
BspFNI	CGCG	3 cut(s)	50, 379, 620
BspPI	GGATC	2 cut(s)	386, 542
BspTNI	GGTCTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	349, 411, 546
BssMI	GATC	3 cut(s)	244, 391, 534
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	411, 546
Bst2UI	CCWGG	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	371, 396
BstENI	CCTNNNNNAGG	2 cut(s)	410, 438
BstF5I	GGATG	1 cut(s)	170
BstFNI	CGCG	3 cut(s)	50, 379, 620
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	3 cut(s)	247, 394, 537
BstMAI	GTCTC	3 cut(s)	49, 222, 392
BstMBI	GATC	3 cut(s)	244, 391, 534
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 73, 689
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	3 cut(s)	50, 379, 620
BstV1I	GCAGC	3 cut(s)	79, 96, 460
BsuRI	GGCC	4 cut(s)	252, 284, 515, 522
BtgZI	GCGATG	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	495
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	3 cut(s)	283, 367, 415
Csp6I	GTAC	3 cut(s)	316, 346, 466
CspCI	CAANNNNNGTGG	2 cut(s)	407, 442
CviAII	CATG	4 cut(s)	124, 155, 305, 693
CviQI	GTAC	3 cut(s)	316, 346, 466
DdeI	CTNAG	2 cut(s)	371, 396
DpnI	GATC	3 cut(s)	246, 393, 536
DpnII	GATC	3 cut(s)	244, 391, 534
EaeI	YGGCCR	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	411, 546
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	367, 415
Eco57I	CTGAAG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	2 cut(s)	410, 438
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	411, 546
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	411, 546
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	4 cut(s)	127, 158, 308, 696
FaiI	YATR	6 cut(s)	125, 156, 221, 306, 455, 694
FaqI	GGGAC	3 cut(s)	165, 585, 687
FatI	CATG	4 cut(s)	123, 154, 304, 692
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	6 cut(s)	6, 9, 68, 85, 449, 498
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	6 cut(s)	6, 9, 68, 85, 449, 498
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	6 cut(s)	6, 9, 68, 85, 449, 498
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	4 cut(s)	252, 284, 515, 522
HapII	CCGG	1 cut(s)	58
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	127, 158, 308, 696
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	3 cut(s)	247, 400, 401
Hpy166II	GTNNAC	2 cut(s)	295, 418
Hpy188I	TCNGA	2 cut(s)	95, 265
Hpy188III	TCNNGA	5 cut(s)	365, 395, 459, 532, 672
Hpy8I	GTNNAC	2 cut(s)	295, 418
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	103, 302, 553
HpyCH4IV	ACGT	2 cut(s)	267, 344
HpyCH4V	TGCA	2 cut(s)	11, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 73, 689
HpyF3I	CTNAG	2 cut(s)	371, 396
HpySE526I	ACGT	2 cut(s)	267, 344
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	127, 158, 308, 696
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	3 cut(s)	244, 391, 534
Lsp1109I	GCAGC	3 cut(s)	79, 96, 460
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	267, 344
MalI	GATC	3 cut(s)	246, 393, 536
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	3 cut(s)	244, 391, 534
MboII	GAAGA	2 cut(s)	29, 284
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	2 cut(s)	641, 666
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	3 cut(s)	50, 379, 620
MwoI	GCNNNNNNNGC	3 cut(s)	67, 73, 689
NdeII	GATC	3 cut(s)	244, 391, 534
NlaIII	CATG	4 cut(s)	127, 158, 308, 696
PceI	AGGCCT	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	6 cut(s)	7, 10, 69, 86, 450, 499
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	283, 367, 415
RsaI	GTAC	3 cut(s)	317, 347, 467
RsaNI	GTAC	3 cut(s)	316, 346, 466
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	6 cut(s)	6, 9, 68, 85, 449, 498
Sau3AI	GATC	3 cut(s)	244, 391, 534
Sau96I	GGNCC	3 cut(s)	283, 367, 415
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	9 cut(s)	89, 108, 197, 270, 347, 372, 417, 483, 552
SfaNI	GCATC	1 cut(s)	179
SinI	GGWCC	2 cut(s)	367, 415
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	641, 666
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	7 cut(s)	5, 48, 74, 337, 431, 498, 620
SspMI	CTAG	1 cut(s)	440
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	411, 546
TaiI	ACGT	2 cut(s)	270, 347
TaqI	TCGA	3 cut(s)	79, 270, 557
TasI	AATT	2 cut(s)	641, 666
TauI	GCSGC	2 cut(s)	8, 500
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	4 cut(s)	8, 67, 84, 448
TspDTI	ATGAA	3 cut(s)	79, 208, 321
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	367, 415
XagI	CCTNNNNNAGG	2 cut(s)	410, 438
XapI	RAATTY	2 cut(s)	641, 666
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.