AT5G60190
WRKY Family

Ulp1 protease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015301
Physical Location & Seq
Forward (+)
24234431 .. 24236242
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60190.1

Sequence Viewer

Length: 681 bp
ATGGGAAATACTTCTGATGACGACAAGATCCTCAGCTATGAAGATGTTGTCCTCAGGAGATCAGATTTGGACATCCTAAACGGACCCATTTTTCTAAACGATCGTGTTATCGAGTTCTACCTTAGCTTCTTATCCACGGTTCACAGTTCCACTACCATCTCGCTAATCCCTCCCTCCATTGCTTTCTGGATCTCAAACTGCCCGGACACCGAATACCTCAAAGATTTCATGAAACCACTTAATTTGCGCGACAAAGACCTCCTGATACTCCCTGTAAACGACAATTCAAATGTCGAGGTAGCAGAAGGCGGATTACATTGGAGCTTACTCGTGTACTACAAAGAGGCCAACACGTTTGTCCATCACGATAGCTACATGGGAGTGAATAGATGGAGCGCGAAACAGCTCTTCAAGGCGGTTTCTCCGTTTGTGTCTAATGGAGATGCATCATACAAGGAATGCACTGATACACCACAGCAAAAGAATGGGTACGACTGCGGTGTTTTCCTTCTTGCTACCGCTCGGGTAATATGTGAATGGTTCAGCTCTGGAGGAATGAAGAACCGGGATGAGCTGTGGTTTGCTAATGTGAAGGAGACTGTACCAGATCTGGTTAACCATCTGAGAGAAGAGATTTTGGCGCTGATCAAGAAGTTGATGTCTGAGAGTGTGAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 WRKY

Protein Analysis

226

Amino Acids

25.68

Weight (kDa)

5.02

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 31 - 184 2.7e-13 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60190
fragaria_vesca FvH4_3g33710
malus_domestica MD09G1211300.v1.1 MD11G1123000.v1.1
prunus_persica Prupe.6G092400_v2.0.a1
pyrus_communis pycom11g10400
rosa_chinensis RchiOBHm_Chr5g0061241
rosa_laevigata RLG00000035445
rosa_multiflora Rmu_sc0007612.1_g000045
rosa_roxburghii Rroxscaffold_1G00019460
rosa_rugosa Rorug05G0339100
rosa_samantha Rh5AG400200 Rh5BG413200 Rh5CG437700 Rh5DG427400
rosa_wichuraiana Rw5G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 521
AccII CGCG 2 cut(s) 249, 398
AciI CCGC 4 cut(s) 309, 416, 498, 519
AclWI GGATC 2 cut(s) 22, 197
AfaI GTAC 3 cut(s) 335, 491, 603
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 2 cut(s) 288, 412
AluBI AGCT 7 cut(s) 36, 126, 324, 372, 406, 546, 574
AluI AGCT 7 cut(s) 36, 126, 324, 372, 406, 546, 574
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 2 cut(s) 22, 197
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 10
AspLEI GCGC 3 cut(s) 249, 398, 643
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 2 cut(s) 203, 566
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 1 cut(s) 83
AxyI CCTNAGG 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 297, 329
BauI CACGAG 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 32
BccI CCATC 4 cut(s) 164, 369, 384, 627
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 2 cut(s) 203, 566
BcoDI GTCTC 1 cut(s) 590
BfoI RGCGCY 1 cut(s) 644
BglII AGATCT 1 cut(s) 607
Bme1390I CCNGG 2 cut(s) 203, 566
Bme18I GGWCC 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 203, 566
BmsI GCATC 2 cut(s) 433, 455
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 2 cut(s) 32, 122
BpuMI CCSGG 2 cut(s) 203, 566
BsaJI CCNNGG 1 cut(s) 135
Bse21I CCTNAGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 72, 574
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 4 cut(s) 46, 67, 614, 654
Bsh1236I CGCG 2 cut(s) 249, 398
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 2 cut(s) 203, 565
BsmAI GTCTC 1 cut(s) 590
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 522
Bsp143I GATC 6 cut(s) 27, 59, 100, 189, 607, 645
BspACI CCGC 4 cut(s) 309, 416, 498, 519
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 4 cut(s) 45, 66, 615, 655
BspFNI CGCG 2 cut(s) 249, 398
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 2 cut(s) 22, 197
BspQI GCTCTTC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 6 cut(s) 27, 59, 100, 189, 607, 645
BssSI CACGAG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 329
Bst4CI ACNGT 3 cut(s) 139, 146, 601
Bst6I CTCTTC 2 cut(s) 413, 624
BstDEI CTNAG 5 cut(s) 32, 53, 122, 623, 663
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 72, 574
BstFNI CGCG 2 cut(s) 249, 398
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 3 cut(s) 249, 398, 643
BstKTI GATC 6 cut(s) 30, 62, 103, 192, 610, 648
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 6 cut(s) 27, 59, 100, 189, 607, 645
BstMCI CGRYCG 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 201, 564
BstUI CGCG 2 cut(s) 249, 398
BstX2I RGATCY 3 cut(s) 27, 189, 607
BstYI RGATCY 3 cut(s) 27, 189, 607
Bsu36I CCTNAGG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 72, 574
BtsIMutI CAGTG 1 cut(s) 462
CciI TCATGA 1 cut(s) 228
CfoI GCGC 3 cut(s) 249, 398, 643
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 334, 490, 602
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 2 cut(s) 229, 376
CviJI RGCY 8 cut(s) 36, 126, 324, 347, 372, 406, 546, 574
CviKI_1 RGCY 8 cut(s) 36, 126, 324, 347, 372, 406, 546, 574
CviQI GTAC 3 cut(s) 334, 490, 602
DdeI CTNAG 5 cut(s) 32, 53, 122, 623, 663
DpnI GATC 6 cut(s) 29, 61, 102, 191, 609, 647
DpnII GATC 6 cut(s) 27, 59, 100, 189, 607, 645
Eam1104I CTCTTC 2 cut(s) 413, 624
EarI CTCTTC 2 cut(s) 413, 624
EciI GGCGGA 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 522
EcoT22I ATGCAT 1 cut(s) 448
FaeI CATG 2 cut(s) 232, 379
FaiI YATR 5 cut(s) 39, 230, 377, 451, 532
FatI CATG 2 cut(s) 228, 375
FbaI TGATCA 1 cut(s) 645
FokI GGATG 2 cut(s) 59, 581
GlaI GCGC 3 cut(s) 248, 397, 642
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 1 cut(s) 347
HapII CCGG 2 cut(s) 203, 565
HhaI GCGC 3 cut(s) 249, 398, 643
Hin1II CATG 2 cut(s) 232, 379
Hin6I GCGC 3 cut(s) 247, 396, 641
HinP1I GCGC 3 cut(s) 247, 396, 641
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 2 cut(s) 203, 565
Hpy166II GTNNAC 4 cut(s) 142, 277, 334, 616
Hpy188I TCNGA 4 cut(s) 16, 64, 624, 664
Hpy188III TCNNGA 7 cut(s) 55, 187, 229, 262, 365, 549, 649
Hpy8I GTNNAC 4 cut(s) 142, 277, 334, 616
HpyAV CCTTC 3 cut(s) 299, 518, 586
HpyCH4III ACNGT 3 cut(s) 139, 146, 601
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 2 cut(s) 446, 462
HpyF3I CTNAG 5 cut(s) 32, 53, 122, 623, 663
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 2 cut(s) 232, 379
HspAI GCGC 3 cut(s) 247, 396, 641
Ksp22I TGATCA 1 cut(s) 645
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 6 cut(s) 27, 59, 100, 189, 607, 645
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 2 cut(s) 321, 393
LpnPI CCDG 9 cut(s) 40, 172, 216, 275, 285, 534, 578, 596, 618
LweI GCATC 2 cut(s) 433, 455
MaeII ACGT 1 cut(s) 353
MalI GATC 6 cut(s) 29, 61, 102, 191, 609, 647
MbiI CCGCTC 1 cut(s) 521
MboI GATC 6 cut(s) 27, 59, 100, 189, 607, 645
MboII GAAGA 4 cut(s) 53, 400, 571, 641
MflI RGATCY 3 cut(s) 27, 189, 607
MluCI AATT 2 cut(s) 241, 283
MnlI CCTC 9 cut(s) 41, 62, 180, 184, 227, 269, 289, 337, 545
Mph1103I ATGCAT 1 cut(s) 448
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 2 cut(s) 240, 615
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 2 cut(s) 203, 565
MspR9I CCNGG 2 cut(s) 203, 566
Mva1269I GAATGC 1 cut(s) 464
MvnI CGCG 2 cut(s) 249, 398
NciI CCSGG 2 cut(s) 203, 566
NdeII GATC 6 cut(s) 27, 59, 100, 189, 607, 645
NlaIII CATG 2 cut(s) 232, 379
NlaIV GGNNCC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 448
PagI TCATGA 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 413
PctI GAATGC 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 10
Ple19I CGATCG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 3 cut(s) 27, 189, 607
PvuI CGATCG 1 cut(s) 103
RsaI GTAC 3 cut(s) 335, 491, 603
RsaNI GTAC 3 cut(s) 334, 490, 602
RseI CAYNNNNRTG 1 cut(s) 380
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 240, 615
Sau3AI GATC 6 cut(s) 27, 59, 100, 189, 607, 645
Sau96I GGNCC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 203, 566
SfaNI GCATC 2 cut(s) 433, 455
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 2 cut(s) 241, 283
SsiI CCGC 4 cut(s) 309, 416, 498, 519
StyD4I CCNGG 2 cut(s) 201, 564
TaaI ACNGT 3 cut(s) 139, 146, 601
TaiI ACGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 111, 294
TasI AATT 2 cut(s) 241, 283
TatI WGTACW 1 cut(s) 333
Tru1I TTAA 2 cut(s) 240, 615
Tru9I TTAA 2 cut(s) 240, 615
TscAI CASTG 1 cut(s) 469
TspDTI ATGAA 4 cut(s) 54, 217, 245, 572
TspGWI ACGGA 2 cut(s) 96, 414
TspRI CASTG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.