Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015301

Physical Location & Seq

Genomic Coordinates Forward (+)

6370606 .. 6372940

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAAAAACCAATCCTGATGAAAAGATTCTCAGCTACAATGATGTTGTACTCCGACGATCAGACTTGGATATCCTCAGTGGCCCATATTTTCTCAACGATCGAATCATTGAGTTCTATTTCAGTTATCTATCATCGTGTTCTGAGGAGATCCTGCTGGTTCCACCTTCGATTGCATTCTGTATAATGAATTACCCAGTTGGTCAAGGCCTAACAGAGTTCCTAGAACCTCTTCATTTGCCTGAGAAAAAACTGGTTGTCTTTCCCATCAATGACAATGATGATGTGAGTGAGGCTGGAGGCGGGTCTCACTGGAGCCTACTTGCATTTGAGAGAGACGCTAACAAATTTTTTCATCATGATAGCAATAGAGGGATGAATAGTATCCACGCCAAACGACTTTACAACGCTGTTGTTAGCTTTATGAGTGTCTCCAGTTCCGCAACTAAGCCCGTTTATCAAGAGTGTAACTCTTCACCGCAGCAAATGAACGGTTATGATTGTGGCCTGTATGTGTTGGCCATTGCAAGGGTTATATGCAGCTGGTATGGAGAGAAAGACGAAGATGGAGATAAAATGTGGTTCTCTGCTGTGCAGGGGCAGGTTACCCCATATGTTGTTGCCAGAATGCGAAACGAGATCCTCGGGCAGATCAGAGATCTCATGCCCATTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 WRKY

Protein Analysis

226

Amino Acids

25.47

Weight (kDa)

5.1

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60190
fragaria_vesca	FvH4_3g33710
malus_domestica	MD09G1211300.v1.1 MD11G1123000.v1.1
prunus_persica	Prupe.6G092400_v2.0.a1
pyrus_communis	pycom11g10400
rosa_chinensis	RchiOBHm_Chr5g0061241
rosa_laevigata	RLG00000035445
rosa_multiflora	Rmu_sc0007612.1_g000045
rosa_roxburghii	Rroxscaffold_1G00019460
rosa_rugosa	Rorug05G0339100
rosa_samantha	Rh5AG400200 Rh5BG413200 Rh5CG437700 Rh5DG427400
rosa_wichuraiana	Rw5G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	592
AciI	CCGC	3 cut(s)	303, 441, 479
AclWI	GGATC	2 cut(s)	145, 634
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	528
AluBI	AGCT	3 cut(s)	36, 420, 543
AluI	AGCT	3 cut(s)	36, 420, 543
Alw26I	GTCTC	3 cut(s)	312, 330, 436
AlwI	GGATC	2 cut(s)	145, 634
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	4 cut(s)	82, 208, 505, 519
ApeKI	GCWGC	2 cut(s)	481, 540
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	2 cut(s)	27, 231
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	468
AvaI	CYCGRG	1 cut(s)	644
BalI	TGGCCA	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	493, 552
BccI	CCATC	2 cut(s)	275, 560
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	312, 330, 436
BfaI	CTAG	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	2 cut(s)	482, 541
BlsI	GCNGC	2 cut(s)	483, 542
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	162, 317
BmrI	ACTGGG	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	3 cut(s)	318, 334, 418
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse1I	ACTGG	4 cut(s)	197, 258, 317, 435
Bse3DI	GCAATG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	4 cut(s)	46, 91, 135, 234
BseNI	ACTGG	4 cut(s)	197, 258, 317, 435
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	493, 552
BsgI	GTGCAG	1 cut(s)	614
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	4 cut(s)	84, 210, 507, 521
BsiEI	CGRYCG	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	3 cut(s)	312, 330, 436
BsmBI	CGTCTC	1 cut(s)	330
BsmI	GAATGC	2 cut(s)	176, 633
BsnI	GGCC	4 cut(s)	84, 210, 507, 521
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	644
Bsp143I	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
BspACI	CCGC	3 cut(s)	303, 441, 479
BspANI	GGCC	4 cut(s)	84, 210, 507, 521
BspCNI	CTCAG	4 cut(s)	45, 90, 136, 235
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	162, 317
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	2 cut(s)	145, 634
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	4 cut(s)	197, 258, 317, 435
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	2 cut(s)	237, 478
BstDEI	CTNAG	5 cut(s)	32, 77, 144, 243, 447
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	6 cut(s)	62, 103, 153, 642, 654, 661
BstMAI	GTCTC	3 cut(s)	312, 330, 436
BstMBI	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
BstMCI	CGRYCG	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	604
BstV1I	GCAGC	2 cut(s)	493, 552
BstX2I	RGATCY	3 cut(s)	150, 639, 658
BstYI	RGATCY	3 cut(s)	150, 639, 658
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	4 cut(s)	84, 210, 507, 521
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	85, 310
BveI	ACCTGC	1 cut(s)	592
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	2 cut(s)	359, 664
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	5 cut(s)	32, 77, 144, 243, 447
DpnI	GATC	6 cut(s)	61, 102, 152, 641, 653, 660
DpnII	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	237, 478
EarI	CTCTTC	2 cut(s)	237, 478
Eco147I	AGGCCT	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	644
Eco91I	GGTNACC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	604
EcoRV	GATATC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	362, 667
FatI	CATG	2 cut(s)	358, 663
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	482, 541
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	482, 541
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	2 cut(s)	482, 541
GsuI	CTGGAG	3 cut(s)	318, 334, 418
HaeIII	GGCC	4 cut(s)	84, 210, 507, 521
HgaI	GACGC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	362, 667
HinfI	GANTC	2 cut(s)	28, 105
HphI	GGTGA	1 cut(s)	468
Hpy188I	TCNGA	4 cut(s)	56, 64, 145, 656
Hpy188III	TCNNGA	3 cut(s)	17, 359, 461
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	176, 326, 527, 540, 595
HpyF3I	CTNAG	5 cut(s)	32, 77, 144, 243, 447
Hsp92II	CATG	2 cut(s)	362, 667
Kzo9I	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	2 cut(s)	493, 552
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	467, 604
MalI	GATC	6 cut(s)	61, 102, 152, 641, 653, 660
MboI	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
MboII	GAAGA	3 cut(s)	224, 465, 575
MflI	RGATCY	3 cut(s)	150, 639, 658
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	2 cut(s)	190, 347
MluNI	TGGCCA	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	86, 139, 240, 286, 293, 365, 653
Mox20I	TGGCCA	1 cut(s)	521
MroXI	GAANNNNTTC	2 cut(s)	27, 231
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	1 cut(s)	672
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	543
Mva1269I	GAATGC	2 cut(s)	176, 633
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
NlaIII	CATG	2 cut(s)	362, 667
NlaIV	GGNNCC	2 cut(s)	162, 317
PagI	TCATGA	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	210
PctI	GAATGC	2 cut(s)	176, 633
PdmI	GAANNNNTTC	2 cut(s)	27, 231
PfeI	GAWTC	2 cut(s)	28, 105
PkrI	GCNGC	2 cut(s)	483, 542
Ple19I	CGATCG	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	162, 317
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	3 cut(s)	150, 639, 658
PvuI	CGATCG	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	543
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	2 cut(s)	482, 541
Sau3AI	GATC	6 cut(s)	59, 100, 150, 639, 651, 658
Sau96I	GGNCC	1 cut(s)	83
SetI	ASST	6 cut(s)	38, 169, 232, 422, 545, 606
Sse9I	AATT	2 cut(s)	190, 347
SseBI	AGGCCT	1 cut(s)	210
SsiI	CCGC	3 cut(s)	303, 441, 479
SspMI	CTAG	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	2 cut(s)	103, 170
TasI	AATT	2 cut(s)	190, 347
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	28, 105
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	85, 317
TseI	GCWGC	2 cut(s)	481, 540
TspDTI	ATGAA	6 cut(s)	36, 203, 224, 344, 392, 503
TspRI	CASTG	2 cut(s)	85, 317
XapI	RAATTY	1 cut(s)	347
XmnI	GAANNNNTTC	2 cut(s)	27, 231
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.