MD09G1211300.v1.1
WRKY Family

protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015301
Physical Location & Seq
Forward (+)
20650585 .. 20651259
675 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1211300.v1.1.491

Sequence Viewer

Length: 675 bp
ATGGGAAAACCCAATCCTGATGAAAAGATTCTCAGCTACAATGATGTTGTACTCAGACGATCAGACTTGGATATCCTCAGTGGCCCGTATTTTCTCAATGATCGACTCATCGAGTTTTATTTCAGTCACCTGTCATCATGCTCTGAGGAGATATTACTCATTGCACCTTCAATTGCATTCTGGATGATGAATGCGGTTGGTCAAGGCCTCCACGAGTTCCTGGTACTTCTTAATTTGCCTGATAAAAAACTGGTAATCTTTCCAGTCAATGACAATGAGGATGTGAGTGAAGCTGGAGGTGGATCTCACTGGAGCCTACTTGCATTTGAGAGAGATTCTAACGTCTTTGTTCATCATGATAGCAATGGAGGGATGAATAGAAGGCACGCTAAAAAACTGTATGATGCGGTTGTTGACTTCATGAGTGTCTCCAGTTCAGCAACTAAGCCCACTTATCAAGAGTGTAGTGATTCACCGCAAAAAGTAAACGGTTATGATTGTGGCTTGTTTGTGTTGGCTATTGCAAGGGTTATATGCAGTTGGTACGGAAGTAAAGACAAAGGTGAGCAGACTTTGTGGTTCCATGCTGTGCGCGAGCAGGTCACTCCATCTGTTGTTGCTGCAATGCGAAACGAAATCCTGGAGCTGATAAGAGGTCTCATGCCCGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 WRKY

Protein Analysis

225

Amino Acids

25.16

Weight (kDa)

5.47

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 64 - 177 1.3e-10 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60190
fragaria_vesca FvH4_3g33710
malus_domestica MD09G1211300.v1.1 MD11G1123000.v1.1
prunus_persica Prupe.6G092400_v2.0.a1
pyrus_communis pycom11g10400
rosa_chinensis RchiOBHm_Chr5g0061241
rosa_laevigata RLG00000035445
rosa_multiflora Rmu_sc0007612.1_g000045
rosa_roxburghii Rroxscaffold_1G00019460
rosa_rugosa Rorug05G0339100
rosa_samantha Rh5AG400200 Rh5BG413200 Rh5CG437700 Rh5DG427400
rosa_wichuraiana Rw5G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccII CGCG 1 cut(s) 594
AciI CCGC 3 cut(s) 194, 407, 476
AclWI GGATC 1 cut(s) 310
AfaI GTAC 3 cut(s) 51, 225, 545
AgsI TTSAA 1 cut(s) 171
AjnI CCWGG 2 cut(s) 219, 639
AluBI AGCT 3 cut(s) 36, 293, 646
AluI AGCT 3 cut(s) 36, 293, 646
Alw26I GTCTC 2 cut(s) 433, 662
AlwI GGATC 1 cut(s) 310
AoxI GGCC 2 cut(s) 82, 205
ApeKI GCWGC 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 3 cut(s) 119, 465, 575
BaeI ACNNNNGTAYC 2 cut(s) 535, 568
BauI CACGAG 1 cut(s) 212
BbvI GCAGC 1 cut(s) 607
BccI CCATC 1 cut(s) 616
BciT130I CCWGG 2 cut(s) 221, 641
BcoDI GTCTC 2 cut(s) 433, 662
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
Bme1390I CCNGG 2 cut(s) 221, 641
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 314, 581
BmrFI CCNGG 2 cut(s) 221, 641
BmsI GCATC 1 cut(s) 394
BpmI CTGGAG 4 cut(s) 315, 331, 415, 662
BsaI GGTCTC 1 cut(s) 662
Bse1I ACTGG 4 cut(s) 255, 263, 314, 432
Bse3DI GCAATG 3 cut(s) 159, 370, 630
BseBI CCWGG 2 cut(s) 221, 641
BseGI GGATG 3 cut(s) 189, 286, 378
BseMI GCAATG 3 cut(s) 159, 370, 630
BseMII CTCAG 4 cut(s) 46, 67, 91, 135
BseNI ACTGG 4 cut(s) 255, 263, 314, 432
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 607
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 2 cut(s) 84, 207
BsmAI GTCTC 2 cut(s) 433, 662
BsmI GAATGC 2 cut(s) 176, 196
BsnI GGCC 2 cut(s) 84, 207
Bso31I GGTCTC 1 cut(s) 662
Bsp143I GATC 3 cut(s) 59, 100, 302
BspACI CCGC 3 cut(s) 194, 407, 476
BspANI GGCC 2 cut(s) 84, 207
BspCNI CTCAG 4 cut(s) 45, 66, 90, 136
BspFNI CGCG 1 cut(s) 594
BspHI TCATGA 2 cut(s) 355, 420
BspLI GGNNCC 2 cut(s) 314, 581
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 662
BsrDI GCAATG 3 cut(s) 159, 370, 630
BsrI ACTGG 4 cut(s) 255, 263, 314, 432
BssMI GATC 3 cut(s) 59, 100, 302
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 221, 641
Bst4CI ACNGT 2 cut(s) 399, 491
BstC8I GCNNGC 2 cut(s) 387, 596
BstDEI CTNAG 5 cut(s) 32, 53, 77, 144, 444
BstF5I GGATG 3 cut(s) 189, 286, 378
BstFNI CGCG 1 cut(s) 594
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 3 cut(s) 62, 103, 305
BstMAI GTCTC 2 cut(s) 433, 662
BstMBI GATC 3 cut(s) 59, 100, 302
BstNI CCWGG 2 cut(s) 221, 641
BstSCI CCNGG 2 cut(s) 219, 639
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 2 cut(s) 84, 207
BtsCI GGATG 3 cut(s) 189, 286, 378
BtsIMutI CAGTG 2 cut(s) 85, 307
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 2 cut(s) 387, 596
CciI TCATGA 2 cut(s) 355, 420
CfoI GCGC 1 cut(s) 594
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 50, 224, 544
CviAII CATG 5 cut(s) 138, 356, 421, 584, 661
CviJI RGCY 9 cut(s) 36, 84, 207, 293, 315, 448, 504, 518, 646
CviKI_1 RGCY 9 cut(s) 36, 84, 207, 293, 315, 448, 504, 518, 646
CviQI GTAC 3 cut(s) 50, 224, 544
DdeI CTNAG 5 cut(s) 32, 53, 77, 144, 444
DpnI GATC 3 cut(s) 61, 102, 304
DpnII GATC 3 cut(s) 59, 100, 302
Eco147I AGGCCT 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 662
Eco32I GATATC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 219, 639
EcoRV GATATC 1 cut(s) 73
FaeI CATG 5 cut(s) 141, 359, 424, 587, 664
FaiI YATR 9 cut(s) 139, 357, 402, 422, 495, 533, 535, 585, 662
FatI CATG 5 cut(s) 137, 355, 420, 583, 660
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 3 cut(s) 196, 293, 385
Fsp4HI GCNGC 1 cut(s) 621
GlaI GCGC 1 cut(s) 593
GluI GCNGC 1 cut(s) 621
GsuI CTGGAG 4 cut(s) 315, 331, 415, 662
HaeIII GGCC 2 cut(s) 84, 207
HhaI GCGC 1 cut(s) 594
Hin1II CATG 5 cut(s) 141, 359, 424, 587, 664
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 4 cut(s) 28, 105, 335, 470
HphI GGTGA 3 cut(s) 119, 465, 575
Hpy166II GTNNAC 2 cut(s) 415, 487
Hpy188I TCNGA 3 cut(s) 56, 64, 145
Hpy188III TCNNGA 5 cut(s) 17, 181, 356, 421, 458
Hpy8I GTNNAC 2 cut(s) 415, 487
HpyAV CCTTC 2 cut(s) 177, 375
HpyCH4III ACNGT 2 cut(s) 399, 491
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 6 cut(s) 164, 176, 323, 524, 537, 623
HpyF3I CTNAG 5 cut(s) 32, 53, 77, 144, 444
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 5 cut(s) 141, 359, 424, 587, 664
HspAI GCGC 1 cut(s) 592
Kzo9I GATC 3 cut(s) 59, 100, 302
LmnI GCTCC 2 cut(s) 312, 643
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 1 cut(s) 394
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 125, 601
MalI GATC 3 cut(s) 61, 102, 304
MboI GATC 3 cut(s) 59, 100, 302
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 1 cut(s) 302
MluCI AATT 2 cut(s) 171, 232
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 7 cut(s) 86, 139, 218, 271, 290, 362, 647
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 665
MspR9I CCNGG 2 cut(s) 221, 641
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 2 cut(s) 176, 196
MvaI CCWGG 2 cut(s) 221, 641
MvnI CGCG 1 cut(s) 594
NdeII GATC 3 cut(s) 59, 100, 302
NlaIII CATG 5 cut(s) 141, 359, 424, 587, 664
NlaIV GGNNCC 2 cut(s) 314, 581
NmuCI GTSAC 2 cut(s) 125, 601
PagI TCATGA 2 cut(s) 355, 420
PceI AGGCCT 1 cut(s) 207
PctI GAATGC 2 cut(s) 176, 196
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 28, 335, 470
PfoI TCCNGGA 1 cut(s) 639
PkrI GCNGC 1 cut(s) 622
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 219, 639
PspGI CCWGG 2 cut(s) 219, 639
PspN4I GGNNCC 2 cut(s) 314, 581
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 3 cut(s) 51, 225, 545
RsaNI GTAC 3 cut(s) 50, 224, 544
RseI CAYNNNNRTG 1 cut(s) 665
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 3 cut(s) 59, 100, 302
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 221, 641
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 665
Sse9I AATT 2 cut(s) 171, 232
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 3 cut(s) 194, 407, 476
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 219, 639
TaaI ACNGT 2 cut(s) 399, 491
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 103, 111
TasI AATT 2 cut(s) 171, 232
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 3 cut(s) 28, 335, 470
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 85, 314
TseFI GTSAC 2 cut(s) 125, 601
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 2 cut(s) 125, 601
TspDTI ATGAA 5 cut(s) 36, 203, 341, 389, 409
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 2 cut(s) 85, 314
XmnI GAANNNNTTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.