FvH4_3g33710
WRKY Family

protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015301
Physical Location & Seq
Reverse (-)
29215316 .. 29217559
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33710.t1

Sequence Viewer

Length: 684 bp
ATGGCCAAAAGTAATCCTGATGAAAAGATTCTCAGCTACAATGATGTGGTACTAAGACGATCAGACTTGGATATCCTCAGTGGCCCATATTTTCTCAATGATCGAATCATCGAGTTCTATTTCAGTCATCTTTCATCATGCTCCGAGGAGATTCTACTCATTCCACCTTCAATTACATTTTGGATGATGAATTGCCCAGCTGAGAGCCTGAAAGACTTCCTAGACCCTCTTCATTTGCCCGATAAGAAAGTGGTAATCTTTCCTGTCAATGACAATGATGATGTGAGTGAAGCTGAAGGTGGATCTCATTGGAGCCTACTTGCATTTGAGAGAAGCATGAACACCTTTTATCATCATGATAGCAGTCGAGGGGGGTTGAGTAAACGTCCTGCCAAACGACTTTACAATGCTGTTAAGAAATTTATGAGTGTTTCCAGTTCAGCGACTGATCCCGTGTATAAAGAGTGTACTGATTCACCGCACCAAGTAAATGGTTATGATTGTGGCATGTATGTGTTGGCCATTGCAAGGATAATATGCAGCTGGTATGGAAGTAAAGACAAAGATGGACATAATATGTGGTTCTCTGCTGTGAAGGAACAAGTCACTCCATCGGCTATTGCTGCAATGCGAGGTGAGATCCTGGGTTTGATCAGAGGTTTGATGCCCAAAAGTGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 WRKY

Protein Analysis

228

Amino Acids

25.6

Weight (kDa)

5.79

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 78 - 179 2.5e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60190
fragaria_vesca FvH4_3g33710
malus_domestica MD09G1211300.v1.1 MD11G1123000.v1.1
prunus_persica Prupe.6G092400_v2.0.a1
pyrus_communis pycom11g10400
rosa_chinensis RchiOBHm_Chr5g0061241
rosa_laevigata RLG00000035445
rosa_multiflora Rmu_sc0007612.1_g000045
rosa_roxburghii Rroxscaffold_1G00019460
rosa_rugosa Rorug05G0339100
rosa_samantha Rh5AG400200 Rh5BG413200 Rh5CG437700 Rh5DG427400
rosa_wichuraiana Rw5G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 479
AclWI GGATC 3 cut(s) 310, 443, 634
AcoI YGGCCR 2 cut(s) 3, 519
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 2 cut(s) 51, 469
AfiI CCNNNNNNNGG 1 cut(s) 528
AgsI TTSAA 1 cut(s) 171
AjnI CCWGG 1 cut(s) 642
AluBI AGCT 5 cut(s) 36, 200, 293, 543, 679
AluI AGCT 5 cut(s) 36, 200, 293, 543, 679
AlwI GGATC 3 cut(s) 310, 443, 634
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 3 cut(s) 3, 82, 519
ApeKI GCWGC 2 cut(s) 540, 623
ApoI RAATTY 1 cut(s) 419
Asp700I GAANNNNTTC 2 cut(s) 27, 215
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 468, 647
BalI TGGCCA 2 cut(s) 5, 521
BbvI GCAGC 2 cut(s) 552, 610
BccI CCATC 2 cut(s) 560, 619
BciT130I CCWGG 1 cut(s) 644
BclI TGATCA 1 cut(s) 651
BfaI CTAG 1 cut(s) 221
BisI GCNGC 2 cut(s) 541, 624
BlsI GCNGC 2 cut(s) 542, 625
Bme1390I CCNGG 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 644
BmsI GCATC 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 144, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 2 cut(s) 522, 633
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 2 cut(s) 144, 643
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 2 cut(s) 522, 633
BseMII CTCAG 3 cut(s) 46, 91, 192
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 552, 610
BseYI CCCAGC 1 cut(s) 196
BshFI GGCC 3 cut(s) 5, 84, 521
BslI CCNNNNNNNGG 1 cut(s) 528
BsnI GGCC 3 cut(s) 5, 84, 521
Bsp143I GATC 6 cut(s) 59, 100, 302, 448, 639, 651
BspACI CCGC 1 cut(s) 479
BspANI GGCC 3 cut(s) 5, 84, 521
BspCNI CTCAG 3 cut(s) 45, 90, 193
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 3 cut(s) 310, 443, 634
BsrDI GCAATG 2 cut(s) 522, 633
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 144, 643
BssMI GATC 6 cut(s) 59, 100, 302, 448, 639, 651
Bst2UI CCWGG 1 cut(s) 644
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 4 cut(s) 32, 53, 77, 201
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 6 cut(s) 62, 103, 305, 451, 642, 654
BstMBI GATC 6 cut(s) 59, 100, 302, 448, 639, 651
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 1 cut(s) 644
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 642
BstV1I GCAGC 2 cut(s) 552, 610
BstX2I RGATCY 2 cut(s) 302, 639
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 2 cut(s) 302, 639
BsuRI GGCC 3 cut(s) 5, 84, 521
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 50, 468
CviAII CATG 4 cut(s) 138, 337, 356, 508
CviQI GTAC 2 cut(s) 50, 468
DdeI CTNAG 4 cut(s) 32, 53, 77, 201
DpnI GATC 6 cut(s) 61, 102, 304, 450, 641, 653
DpnII GATC 6 cut(s) 59, 100, 302, 448, 639, 651
EaeI YGGCCR 2 cut(s) 3, 519
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 642
EcoRV GATATC 1 cut(s) 73
FaeI CATG 4 cut(s) 141, 340, 359, 511
FatI CATG 4 cut(s) 137, 336, 355, 507
FbaI TGATCA 1 cut(s) 651
Fnu4HI GCNGC 2 cut(s) 541, 624
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 541, 624
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 541, 624
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 3 cut(s) 5, 84, 521
Hin1II CATG 4 cut(s) 141, 340, 359, 511
HinfI GANTC 4 cut(s) 28, 105, 151, 473
HphI GGTGA 2 cut(s) 468, 647
Hpy166II GTNNAC 2 cut(s) 383, 468
Hpy188I TCNGA 3 cut(s) 64, 145, 656
Hpy188III TCNNGA 2 cut(s) 17, 356
Hpy8I GTNNAC 2 cut(s) 383, 468
HpyAV CCTTC 3 cut(s) 177, 290, 589
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 4 cut(s) 323, 527, 540, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 4 cut(s) 32, 53, 77, 201
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 4 cut(s) 141, 340, 359, 511
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 6 cut(s) 59, 100, 302, 448, 639, 651
LmnI GCTCC 2 cut(s) 146, 312
LpnPI CCDG 9 cut(s) 30, 210, 221, 276, 402, 448, 529, 629, 656
Lsp1109I GCAGC 2 cut(s) 552, 610
LweI GCATC 1 cut(s) 654
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 604
MalI GATC 6 cut(s) 61, 102, 304, 450, 641, 653
MboI GATC 6 cut(s) 59, 100, 302, 448, 639, 651
MboII GAAGA 1 cut(s) 221
MflI RGATCY 2 cut(s) 302, 639
MlsI TGGCCA 2 cut(s) 5, 521
MluCI AATT 3 cut(s) 171, 190, 419
MluNI TGGCCA 2 cut(s) 5, 521
MnlI CCTC 6 cut(s) 86, 139, 237, 362, 626, 650
Mox20I TGGCCA 2 cut(s) 5, 521
MroXI GAANNNNTTC 2 cut(s) 27, 215
MscI TGGCCA 2 cut(s) 5, 521
MseI TTAA 2 cut(s) 414, 682
MslI CAYNNNNRTG 1 cut(s) 512
Msp20I TGGCCA 2 cut(s) 5, 521
MspA1I CMGCKG 2 cut(s) 200, 543
MspR9I CCNGG 1 cut(s) 644
MvaI CCWGG 1 cut(s) 644
MwoI GCNNNNNNNGC 1 cut(s) 623
NdeII GATC 6 cut(s) 59, 100, 302, 448, 639, 651
NlaIII CATG 4 cut(s) 141, 340, 359, 511
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 604
NspI RCATGY 1 cut(s) 511
PagI TCATGA 1 cut(s) 355
PdmI GAANNNNTTC 2 cut(s) 27, 215
PfeI GAWTC 4 cut(s) 28, 105, 151, 473
PkrI GCNGC 2 cut(s) 542, 625
Psp6I CCWGG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 2 cut(s) 302, 639
PvuII CAGCTG 2 cut(s) 200, 543
RsaI GTAC 2 cut(s) 51, 469
RsaNI GTAC 2 cut(s) 50, 468
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 2 cut(s) 414, 682
SatI GCNGC 2 cut(s) 541, 624
Sau3AI GATC 6 cut(s) 59, 100, 302, 448, 639, 651
Sau96I GGNCC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 644
SfaNI GCATC 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 512
Sse9I AATT 3 cut(s) 171, 190, 419
SsiI CCGC 1 cut(s) 479
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 642
TaiI ACGT 1 cut(s) 388
TaqI TCGA 3 cut(s) 103, 111, 367
TasI AATT 3 cut(s) 171, 190, 419
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 4 cut(s) 28, 105, 151, 473
Tru1I TTAA 2 cut(s) 414, 682
Tru9I TTAA 2 cut(s) 414, 682
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 2 cut(s) 540, 623
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 5 cut(s) 36, 123, 203, 221, 353
TspRI CASTG 1 cut(s) 85
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 511
XmnI GAANNNNTTC 2 cut(s) 27, 215
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.