AT5G60710

Zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014999
Physical Location & Seq
Reverse (-)
24410581 .. 24415145
4565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60710.1

Sequence Viewer

Length: 2115 bp
ATGGGAAGCAAATGGCGAAAAGCAAAGGTGGCTTTAGGTCTCAATTTATGTCTCTACGTTCCCAAAACGCTTGAAGATTCTTCTCCTCCAAGAAGATCCGACGACGCCGTTTCACTTTCTCCGGTTATTGTTCAAAGACCATCAACGCCGACTCCTTCCTCCTCTGGTCTCCGATTACCTCGTTCCATGAGCAAATCCTCATCAAAGAAAACTTGTGCGATATGTTTGACGGCGATGAAAGCTGGGCAAGGCCACGCCATCTTCACAGCGGAATGCTCTCATTCGTTTCATTTCCAATGCATCACTACGAATGTTAAACACGGGAACCAGATTTGTCCTGTTTGTCGCGCGAAATGGAACGAGATTCCTATTCAGAGCCCTAATGCTAAGCCTAAATCTGGTGTCAAACCGATAGGTCGACCAAGGGATGATGCCTGGATGTCTATACCTCCAAGGAGGTCGTCCCCTATTCAATATACTTCACGGCCTGACTGTCTAAGGGTCTCCTCGATCTTTAACACCGAGCCTGCGGTTTTTAATGATGATGAGGCTCTGGAACATCAAGACCGTTCTGCTGAATCTGGTTTGGATAAACCTGGTGTTACTGGGACATTGGAAGTTAAAACATACCCTGAGATTTCGGAAGTAGTGAGATCGGTTTCATTCAAGGATTTTGCTGTACTGATCAATCTAAAAGCTCCTACTTCTTCAAAGTCCTCTTCAAATCCATCTTCGTCTTCTCGGGCTCCTGTCGATCTAGTCACAGTTCTTGATGTGAGTGGAAGCATGGCTGGAACAAAACTGGCGTTGCTAAAGCGAGCAATGGGTTTTGTGATTCAGAATCTTGGTCCATTTGACCGTCTCTCAGTTATATCCTTCTCCTCCACAGCACGTCGTAACTTCCCTCTTCGTCTCATGACCGAGACTGGTAAACAAGAGGCGCTTCAGGCGGTTAATTCATTGGTCTCAAACGGAGGGACTAACATTGCAGAGGGATTGAAGAAGGGCGCAAGAGTTTTGATCGATCGTAGATTCAAGAACCCGGTATCTAGCATCGTACTCTTATCCGATGGCCAAGATACATATACCATGACTAGCCCCAACGGTTCCAGAGGGACGGATTACAAAGCCCTTCTTCCTAAAGAGATCAACGGAAACCGGATTCCAGTTCACGCATTTGGGTTTGGTGCGGACCACGATGCTTCCTTAATGCATTCCATTGCAGAAAACTCCGGAGGTACATTTTCTTTCATAGAGTCTGAAACGGTTATACAAGATGCATTCGCACAGTGCATTGGAGGTCTTCTTAGCGTTGTGGTTCAAGAGCTATGCGTTACAATTGAGTGCATGCATCATCTGTTGAGGATTGGATCCGTTAAAGCTGGAAGCTACCGGTTCGATAATGGTCCGAATTCGAGAACCGGATCTATCGCAGTTGGTGATCTCTATGCAGAGGAAGAGAGGAATTTCTTGGTGAATCTCGATATCCCTATTGTCGATGGAGTTTCAGATGTGATGTCGTTACTTAAGGTTCAGTGCGTTTACAAAGACCCTGTGACGAAAGAGACGGTTAATTTGAATAATTCCGGCGAAGTAAAGATTCTCAGGCCAATAGTGATGACAGAAAGAAGACCTGTAGTGTCAGTTGAAGTTGACAGACAGAGGATCAGATTACGTGCGGCAGAAGCAATCTCTGAAGCTAGGGTTTTAGCCGAGCGCGGTGATTTGACTGAAGCTGTGTCGGTTCTCGAGACTTGCCGTGGGTTACTGACCGAGTCCGTGTCGGGTCGAGCCGGAGATCAATTGTGTGTCACACTGTGTGCAGAGCTGAAGGAGATGCAAGAGAGAATGGCGAGCCGTCAAGTATATGAGGCTTCGGGTAGGGCTTACGTGCTCGCCGGTCTGAGCTCGCACTCCTGGCAGCGAGCAACGGCGAGAGGCGATATGAGTGATTCAACTACAACTTCTTACCAGACGCAATCAATGGTGGATATGGTGAATCTCTCACAGACCATGACTTTCGGAATGCCTATCGCTAGCTCTAATTCGAGTCCGTCGGGGCAGAGGAAACTCCGGCAAGCTCTCAGTTTTCCGGCGAAGCCAAGGCCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

704

Amino Acids

76.42

Weight (kDa)

9.13

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 65 - 116 7.5e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 71 - 116 3.1e-08 Ring finger domain
zf-RING_11 PF17123 72 - 101 8.6e-09 RING-like zinc finger
zf-C3HC4 PF00097 72 - 115 4.8e-07 Zinc finger, C3HC4 type (RING finger)
VWA_CoxE PF05762 247 - 363 4.3e-08 VWA domain containing CoxE-like protein
VWA PF00092 252 - 428 1.4e-24 von Willebrand factor type A domain
VWA_3 PF13768 252 - 417 1.5e-17 von Willebrand factor type A domain
VWA_2 PF13519 253 - 359 2e-18 von Willebrand factor type A domain
WAV3_C PF25243 560 - 621 4.2e-07 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint PF14624 600 - 670 3e-18 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60710
fragaria_vesca FvH4_3g31730 FvH4_3g31730
malus_domestica MD03G1121000.v1.1 MD11G1139800.v1.1
pyrus_communis pycom11g11540
rosa_chinensis RchiOBHm_Chr5g0058461
rosa_laevigata RLG00000035222
rosa_multiflora Rmu_sc0000367.1_g000122
rosa_roxburghii Rroxscaffold_1G00022080
rosa_rugosa Rorug05G0314900
rosa_samantha Rh5AG381400 Rh5BG392900 Rh5CG417100 Rh5DG408100
rosa_wichuraiana Rw5G035930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 418
AccII CGCG 3 cut(s) 348, 350, 1719
AccIII TCCGGA 1 cut(s) 1232
AciI CCGC 6 cut(s) 269, 530, 950, 1190, 1679, 1719
AclWI GGATC 5 cut(s) 90, 1365, 1378, 1432, 1673
AcoI YGGCCR 1 cut(s) 1072
AcsI RAATTY 2 cut(s) 1411, 1465
AcuI CTGAAG 4 cut(s) 929, 1716, 1752, 1850
AcyI GRCGYC 1 cut(s) 105
AdeI CACNNNGTG 2 cut(s) 1818, 1820
AfaI GTAC 3 cut(s) 681, 1059, 1240
AfiI CCNNNNNNNGG 1 cut(s) 398
AflII CTTAAG 1 cut(s) 1526
AgeI ACCGGT 1 cut(s) 1392
AjiI CACGTC 1 cut(s) 893
AjnI CCWGG 3 cut(s) 434, 595, 1916
Alw21I GWGCWC 2 cut(s) 1896, 1910
AlwI GGATC 5 cut(s) 90, 1365, 1378, 1432, 1673
Ama87I CYCGRG 2 cut(s) 741, 1748
Aor13HI TCCGGA 1 cut(s) 1232
AoxI GGCC 5 cut(s) 250, 485, 1072, 1607, 2105
ApeKI GCWGC 1 cut(s) 1921
ApoI RAATTY 2 cut(s) 1411, 1465
ArsI GACNNNNNNTTYG 2 cut(s) 1558, 1590
AsiGI ACCGGT 1 cut(s) 1392
AspA2I CCTAGG 1 cut(s) 2108
AspLEI GCGC 4 cut(s) 350, 943, 1010, 1719
AspS9I GGNCC 3 cut(s) 848, 1192, 1406
AsuC2I CCSGG 1 cut(s) 1043
AsuHPI GGTGA 4 cut(s) 1451, 1486, 1733, 2008
AsuNHI GCTAGC 1 cut(s) 2036
AvaI CYCGRG 2 cut(s) 741, 1748
AvaII GGWCC 3 cut(s) 848, 1192, 1406
AvrII CCTAGG 1 cut(s) 2108
BalI TGGCCA 1 cut(s) 1074
BamHI GGATCC 1 cut(s) 1370
BanII GRGCYC 3 cut(s) 380, 748, 1910
BbsI GAAGAC 3 cut(s) 729, 1295, 1636
Bbv12I GWGCWC 2 cut(s) 1896, 1910
BbvI GCAGC 1 cut(s) 1933
BccI CCATC 5 cut(s) 148, 266, 736, 1064, 1493
BceAI ACGGC 6 cut(s) 92, 246, 500, 1743, 1842, 1947
BciT130I CCWGG 3 cut(s) 436, 597, 1918
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 1 cut(s) 1043
BfaI CTAG 6 cut(s) 758, 1050, 1095, 1701, 2037, 2109
BfmI CTRYAG 1 cut(s) 1635
BfoI RGCGCY 1 cut(s) 944
BfrI CTTAAG 1 cut(s) 1526
BisI GCNGC 2 cut(s) 1680, 1922
BlnI CCTAGG 1 cut(s) 2108
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 2 cut(s) 1681, 1923
Bme1390I CCNGG 4 cut(s) 436, 597, 1043, 1918
Bme18I GGWCC 3 cut(s) 848, 1192, 1406
BmeT110I CYCGRG 2 cut(s) 741, 1748
BmgBI CACGTC 1 cut(s) 893
BmgT120I GGNCC 3 cut(s) 848, 1192, 1406
BmiI GGNNCC 4 cut(s) 326, 747, 1108, 1372
BmrFI CCNGG 4 cut(s) 436, 597, 1043, 1918
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 7 cut(s) 309, 421, 1062, 1189, 1267, 1360, 1827
BmtI GCTAGC 1 cut(s) 2040
BmuI ACTGGG 1 cut(s) 615
BpiI GAAGAC 3 cut(s) 729, 1295, 1636
Bpu1102I GCTNAGC 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 1043
Bsa29I ATCGAT 1 cut(s) 1023
BsaAI YACGTR 2 cut(s) 1676, 1891
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 4 cut(s) 44, 173, 508, 970
BsaJI CCNNGG 5 cut(s) 422, 452, 1759, 2102, 2108
BsaWI WCCGGW 5 cut(s) 121, 1158, 1232, 1392, 1421
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 2 cut(s) 1392, 1898
Bse1I ACTGG 4 cut(s) 610, 807, 931, 1166
Bse3DI GCAATG 3 cut(s) 828, 984, 1218
BseAI TCCGGA 1 cut(s) 1232
BseBI CCWGG 3 cut(s) 436, 597, 1918
BseCI ATCGAT 1 cut(s) 1023
BseDI CCNNGG 5 cut(s) 422, 452, 1759, 2102, 2108
BseGI GGATG 2 cut(s) 433, 444
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 3 cut(s) 828, 984, 1218
BseMII CTCAG 5 cut(s) 624, 879, 1618, 1895, 2098
BseNI ACTGG 4 cut(s) 610, 807, 931, 1166
BseRI GAGGAG 4 cut(s) 75, 151, 496, 871
BseXI GCAGC 1 cut(s) 1933
BseYI CCCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 1842
Bsh1236I CGCG 3 cut(s) 348, 350, 1719
Bsh1285I CGRYCG 1 cut(s) 1027
BshFI GGCC 5 cut(s) 252, 487, 1074, 1609, 2107
BshTI ACCGGT 1 cut(s) 1392
BshVI ATCGAT 1 cut(s) 1023
BsiEI CGRYCG 1 cut(s) 1027
BsiHKAI GWGCWC 2 cut(s) 1896, 1910
BsiHKCI CYCGRG 2 cut(s) 741, 1748
BslFI GGGAC 4 cut(s) 448, 622, 991, 1129
BslI CCNNNNNNNGG 1 cut(s) 398
BsmBI CGTCTC 3 cut(s) 866, 917, 1559
BsmFI GGGAC 4 cut(s) 448, 622, 991, 1129
BsmI GAATGC 4 cut(s) 278, 1213, 1280, 2031
BsnI GGCC 5 cut(s) 252, 487, 1074, 1609, 2107
Bso31I GGTCTC 4 cut(s) 44, 173, 508, 970
BsoBI CYCGRG 2 cut(s) 741, 1748
Bsp1286I GDGCHC 4 cut(s) 380, 748, 1896, 1910
Bsp13I TCCGGA 1 cut(s) 1232
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 6 cut(s) 269, 530, 950, 1190, 1679, 1719
BspANI GGCC 5 cut(s) 252, 487, 1074, 1609, 2107
BspCNI CTCAG 5 cut(s) 625, 878, 1617, 1896, 2097
BspDI ATCGAT 1 cut(s) 1023
BspEI TCCGGA 1 cut(s) 1232
BspFNI CGCG 3 cut(s) 348, 350, 1719
BspHI TCATGA 1 cut(s) 915
BspLI GGNNCC 4 cut(s) 326, 747, 1108, 1372
BspOI GCTAGC 1 cut(s) 2040
BspPI GGATC 5 cut(s) 90, 1365, 1378, 1432, 1673
BspTI CTTAAG 1 cut(s) 1526
BspTNI GGTCTC 4 cut(s) 44, 173, 508, 970
BsrDI GCAATG 3 cut(s) 828, 984, 1218
BsrFI RCCGGY 2 cut(s) 1392, 1898
BsrI ACTGG 4 cut(s) 610, 807, 931, 1166
BssAI RCCGGY 2 cut(s) 1392, 1898
BssECI CCNNGG 5 cut(s) 422, 452, 1759, 2102, 2108
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 4 cut(s) 422, 452, 2102, 2108
Bst2UI CCWGG 3 cut(s) 436, 597, 1918
Bst4CI ACNGT 9 cut(s) 494, 569, 766, 860, 1106, 1267, 1290, 1570, 1818
Bst6I CTCTTC 3 cut(s) 724, 912, 1452
BstACI GRCGYC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 1526
BstBAI YACGTR 2 cut(s) 1676, 1891
BstC8I GCNNGC 9 cut(s) 528, 819, 1349, 1855, 1896, 1910, 1926, 2038, 2079
BstDEI CTNAG 8 cut(s) 387, 497, 633, 865, 1307, 1604, 1904, 2084
BstDSI CCRYGG 1 cut(s) 1759
BstF5I GGATG 2 cut(s) 433, 444
BstFNI CGCG 3 cut(s) 348, 350, 1719
BstH2I RGCGCY 1 cut(s) 944
BstHHI GCGC 4 cut(s) 350, 943, 1010, 1719
BstMCI CGRYCG 1 cut(s) 1027
BstMWI GCNNNNNNNGC 5 cut(s) 29, 239, 947, 1685, 1918
BstNI CCWGG 3 cut(s) 436, 597, 1918
BstNSI RCATGY 1 cut(s) 1351
BstSCI CCNGG 4 cut(s) 434, 595, 1041, 1916
BstSFI CTRYAG 1 cut(s) 1635
BstUI CGCG 3 cut(s) 348, 350, 1719
BstV1I GCAGC 1 cut(s) 1933
BstV2I GAAGAC 3 cut(s) 729, 1295, 1636
BstX2I RGATCY 3 cut(s) 95, 1370, 1424
BstYI RGATCY 3 cut(s) 95, 1370, 1424
Bsu15I ATCGAT 1 cut(s) 1023
BsuRI GGCC 5 cut(s) 252, 487, 1074, 1609, 2107
BsuTUI ATCGAT 1 cut(s) 1023
BtgI CCRYGG 1 cut(s) 1759
BtgZI GCGATG 1 cut(s) 248
BtrI CACGTC 1 cut(s) 893
BtsCI GGATG 2 cut(s) 433, 444
BtsIMutI CAGTG 3 cut(s) 1295, 1541, 1814
Cac8I GCNNGC 9 cut(s) 528, 819, 1349, 1855, 1896, 1910, 1926, 2038, 2079
CciI TCATGA 1 cut(s) 915
CfoI GCGC 4 cut(s) 350, 943, 1010, 1719
Cfr10I RCCGGY 2 cut(s) 1392, 1898
Cfr13I GGNCC 3 cut(s) 848, 1192, 1406
ClaI ATCGAT 1 cut(s) 1023
CseI GACGC 2 cut(s) 113, 1984
CsiI ACCWGGT 1 cut(s) 595
Csp6I GTAC 3 cut(s) 680, 1058, 1239
CspAI ACCGGT 1 cut(s) 1392
CviAII CATG 6 cut(s) 187, 787, 916, 1090, 1348, 2014
CviQI GTAC 3 cut(s) 680, 1058, 1239
DdeI CTNAG 8 cut(s) 387, 497, 633, 865, 1307, 1604, 1904, 2084
DraIII CACNNNGTG 2 cut(s) 1818, 1820
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 3 cut(s) 724, 912, 1452
EarI CTCTTC 3 cut(s) 724, 912, 1452
Ecl136II GAGCTC 1 cut(s) 1908
Eco130I CCWWGG 4 cut(s) 422, 452, 2102, 2108
Eco147I AGGCCT 1 cut(s) 2107
Eco24I GRGCYC 3 cut(s) 380, 748, 1910
Eco31I GGTCTC 4 cut(s) 44, 173, 508, 970
Eco32I GATATC 1 cut(s) 1486
Eco47I GGWCC 3 cut(s) 848, 1192, 1406
Eco53kI GAGCTC 1 cut(s) 1908
Eco57I CTGAAG 4 cut(s) 929, 1716, 1752, 1850
Eco88I CYCGRG 2 cut(s) 741, 1748
EcoICRI GAGCTC 1 cut(s) 1908
EcoRI GAATTC 1 cut(s) 1411
EcoRII CCWGG 3 cut(s) 434, 595, 1916
EcoRV GATATC 1 cut(s) 1486
EcoT14I CCWWGG 4 cut(s) 422, 452, 2102, 2108
EcoT22I ATGCAT 4 cut(s) 302, 1215, 1282, 1353
EcoT38I GRGCYC 3 cut(s) 380, 748, 1910
ErhI CCWWGG 4 cut(s) 422, 452, 2102, 2108
Esp3I CGTCTC 3 cut(s) 866, 917, 1559
FaeI CATG 6 cut(s) 190, 790, 919, 1093, 1351, 2017
FalI AAGNNNNNCTT 4 cut(s) 927, 959, 1119, 1151
FaqI GGGAC 4 cut(s) 448, 622, 991, 1129
FatI CATG 6 cut(s) 186, 786, 915, 1089, 1347, 2013
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 1680, 1922
FokI GGATG 2 cut(s) 440, 451
FriOI GRGCYC 3 cut(s) 380, 748, 1910
Fsp4HI GCNGC 2 cut(s) 1680, 1922
FspBI CTAG 6 cut(s) 758, 1050, 1095, 1701, 2037, 2109
GlaI GCGC 4 cut(s) 349, 942, 1009, 1718
GluI GCNGC 2 cut(s) 1680, 1922
GsaI CCCAGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 944
HaeIII GGCC 5 cut(s) 252, 487, 1074, 1609, 2107
HgaI GACGC 2 cut(s) 113, 1984
HhaI GCGC 4 cut(s) 350, 943, 1010, 1719
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 6 cut(s) 190, 790, 919, 1093, 1351, 2017
Hin6I GCGC 4 cut(s) 348, 941, 1008, 1717
HinP1I GCGC 4 cut(s) 348, 941, 1008, 1717
HincII GTYRAC 2 cut(s) 419, 1654
HindII GTYRAC 2 cut(s) 419, 1654
HphI GGTGA 4 cut(s) 1451, 1486, 1733, 2008
Hpy166II GTNNAC 5 cut(s) 419, 932, 1171, 1543, 1654
Hpy8I GTNNAC 5 cut(s) 419, 932, 1171, 1543, 1654
Hpy99I CGWCG 4 cut(s) 104, 107, 897, 2059
HpyAV CCTTC 5 cut(s) 165, 886, 997, 1142, 1825
HpyCH4III ACNGT 9 cut(s) 494, 569, 766, 860, 1106, 1267, 1290, 1570, 1818
HpyCH4IV ACGT 4 cut(s) 57, 892, 1675, 1890
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 239, 947, 1685, 1918
HpyF3I CTNAG 8 cut(s) 387, 497, 633, 865, 1307, 1604, 1904, 2084
HpySE526I ACGT 4 cut(s) 57, 892, 1675, 1890
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 6 cut(s) 190, 790, 919, 1093, 1351, 2017
HspAI GCGC 4 cut(s) 348, 941, 1008, 1717
Kpn2I TCCGGA 1 cut(s) 1232
Ksp22I TGATCA 1 cut(s) 684
LmnI GCTCC 2 cut(s) 703, 751
Lsp1109I GCAGC 1 cut(s) 1933
LweI GCATC 7 cut(s) 309, 421, 1062, 1189, 1267, 1360, 1827
MabI ACCWGGT 1 cut(s) 595
MaeI CTAG 6 cut(s) 758, 1050, 1095, 1701, 2037, 2109
MaeII ACGT 4 cut(s) 57, 892, 1675, 1890
MaeIII GTNAC 8 cut(s) 601, 760, 896, 1333, 1521, 1555, 1764, 1810
MfeI CAATTG 2 cut(s) 1338, 1802
MflI RGATCY 3 cut(s) 95, 1370, 1424
MhlI GDGCHC 4 cut(s) 380, 748, 1896, 1910
MlsI TGGCCA 1 cut(s) 1074
MluCI AATT 9 cut(s) 43, 955, 1338, 1411, 1465, 1573, 1582, 1802, 2044
MluNI TGGCCA 1 cut(s) 1074
MlyI GAGTC 4 cut(s) 145, 1265, 1784, 2059
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 1074
Mph1103I ATGCAT 4 cut(s) 302, 1215, 1282, 1353
MroI TCCGGA 1 cut(s) 1232
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 9 cut(s) 315, 516, 537, 621, 954, 1208, 1377, 1527, 1572
Msp20I TGGCCA 1 cut(s) 1074
MspA1I CMGCKG 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 1526
MspR9I CCNGG 4 cut(s) 436, 597, 1043, 1918
MunI CAATTG 2 cut(s) 1338, 1802
Mva1269I GAATGC 4 cut(s) 278, 1213, 1280, 2031
MvaI CCWGG 3 cut(s) 436, 597, 1918
MvnI CGCG 3 cut(s) 348, 350, 1719
MwoI GCNNNNNNNGC 5 cut(s) 29, 239, 947, 1685, 1918
NciI CCSGG 1 cut(s) 1043
NheI GCTAGC 1 cut(s) 2036
NlaIII CATG 6 cut(s) 190, 790, 919, 1093, 1351, 2017
NlaIV GGNNCC 4 cut(s) 326, 747, 1108, 1372
NmeAIII GCCGAG 1 cut(s) 1738
NmuCI GTSAC 3 cut(s) 760, 1555, 1810
NsiI ATGCAT 4 cut(s) 302, 1215, 1282, 1353
NspI RCATGY 1 cut(s) 1351
PaeI GCATGC 1 cut(s) 1351
PaeR7I CTCGAG 1 cut(s) 1748
PagI TCATGA 1 cut(s) 915
PceI AGGCCT 1 cut(s) 2107
PctI GAATGC 4 cut(s) 278, 1213, 1280, 2031
PflFI GACNNNGTC 1 cut(s) 1774
PinAI ACCGGT 1 cut(s) 1392
PkrI GCNGC 2 cut(s) 1681, 1923
Ple19I CGATCG 1 cut(s) 1027
PleI GAGTC 4 cut(s) 145, 1264, 1783, 2058
PpsI GAGTC 4 cut(s) 145, 1264, 1783, 2058
Ppu21I YACGTR 2 cut(s) 1676, 1891
Psp124BI GAGCTC 1 cut(s) 1910
Psp6I CCWGG 3 cut(s) 434, 595, 1916
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 3 cut(s) 434, 595, 1916
PspN4I GGNNCC 4 cut(s) 326, 747, 1108, 1372
PspPI GGNCC 3 cut(s) 848, 1192, 1406
PsuI RGATCY 3 cut(s) 95, 1370, 1424
PsyI GACNNNGTC 1 cut(s) 1774
PvuI CGATCG 1 cut(s) 1027
RsaI GTAC 3 cut(s) 681, 1059, 1240
RsaNI GTAC 3 cut(s) 680, 1058, 1239
SacI GAGCTC 1 cut(s) 1910
SalI GTCGAC 1 cut(s) 417
SaqAI TTAA 9 cut(s) 315, 516, 537, 621, 954, 1208, 1377, 1527, 1572
SatI GCNGC 2 cut(s) 1680, 1922
Sau96I GGNCC 3 cut(s) 848, 1192, 1406
SchI GAGTC 4 cut(s) 145, 1265, 1784, 2059
ScrFI CCNGG 4 cut(s) 436, 597, 1043, 1918
SduI GDGCHC 4 cut(s) 380, 748, 1896, 1910
SexAI ACCWGGT 1 cut(s) 595
SfaNI GCATC 7 cut(s) 309, 421, 1062, 1189, 1267, 1360, 1827
SfcI CTRYAG 1 cut(s) 1635
Sfr274I CTCGAG 1 cut(s) 1748
SinI GGWCC 3 cut(s) 848, 1192, 1406
SlaI CTCGAG 1 cut(s) 1748
SmlI CTYRAG 2 cut(s) 1526, 1748
SmoI CTYRAG 2 cut(s) 1526, 1748
SphI GCATGC 1 cut(s) 1351
Sse9I AATT 9 cut(s) 43, 955, 1338, 1411, 1465, 1573, 1582, 1802, 2044
SseBI AGGCCT 1 cut(s) 2107
SsiI CCGC 6 cut(s) 269, 530, 950, 1190, 1679, 1719
SspMI CTAG 6 cut(s) 758, 1050, 1095, 1701, 2037, 2109
SstI GAGCTC 1 cut(s) 1910
StuI AGGCCT 1 cut(s) 2107
StyD4I CCNGG 4 cut(s) 434, 595, 1041, 1916
StyI CCWWGG 4 cut(s) 422, 452, 2102, 2108
TaaI ACNGT 9 cut(s) 494, 569, 766, 860, 1106, 1267, 1290, 1570, 1818
TaiI ACGT 4 cut(s) 60, 895, 1678, 1893
TaqII GACCGA 2 cut(s) 935, 1787
TasI AATT 9 cut(s) 43, 955, 1338, 1411, 1465, 1573, 1582, 1802, 2044
TatI WGTACW 1 cut(s) 679
TauI GCSGC 1 cut(s) 1682
Tru1I TTAA 9 cut(s) 315, 516, 537, 621, 954, 1208, 1377, 1527, 1572
Tru9I TTAA 9 cut(s) 315, 516, 537, 621, 954, 1208, 1377, 1527, 1572
TscAI CASTG 3 cut(s) 1295, 1541, 1821
TseFI GTSAC 3 cut(s) 760, 1555, 1810
TseI GCWGC 1 cut(s) 1921
Tsp45I GTSAC 3 cut(s) 760, 1555, 1810
TspDTI ATGAA 5 cut(s) 251, 278, 651, 948, 1240
TspGWI ACGGA 6 cut(s) 987, 1133, 1167, 1363, 1768, 2043
TspRI CASTG 3 cut(s) 1295, 1541, 1821
Tth111I GACNNNGTC 1 cut(s) 1774
Vha464I CTTAAG 1 cut(s) 1526
VpaK11BI GGWCC 3 cut(s) 848, 1192, 1406
XapI RAATTY 2 cut(s) 1411, 1465
XceI RCATGY 1 cut(s) 1351
XhoI CTCGAG 1 cut(s) 1748
XmaJI CCTAGG 1 cut(s) 2108
XmiI GTMKAC 1 cut(s) 418
XspI CTAG 6 cut(s) 758, 1050, 1095, 1701, 2037, 2109
Zsp2I ATGCAT 4 cut(s) 302, 1215, 1282, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.