FvH4_3g31730

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014999
Physical Location & Seq
Reverse (-)
26487325 .. 26492150
4826 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31730.t2

Sequence Viewer

Length: 1932 bp
ATGAGAACTTGCGCAATATGTTTAACTACCATGAAACCTGGACACGGGCATGCCATTTTTACTGCAGAGTGCTCACACTCTTTTCATTTCCACTGCATTACTTCTAATGTAAAACATGGGAACCAAATTTGCCCAGTTTGCAGGGCAAAGTGGAAAGAAGTTCCCTTTCAGAACCCTGCTTCTGATCTTTCACGGGGTATTCCAAGAATTAACCCTGTGAATTGGCCCCAAGATGATGCATGGATGACTGTTCTACGCCAAATTCCTCCACCACGAGTTGACGTGAGCCGGCCTATTACATCACTCTTTCACACTCCTGAATCAGCTATTTTTGACGATGATGAAAGCTTAGATAACCACCCTGACATTTCTATGAATAAGGCATCTGTTGAAGATCAGACTTCTAACAACAATTGTATTGGAATCATAGAGGTCAAAACATATCCCGAAGTTCCAGCTGTTAAAAGATCAAGCTCTCATGATAACTTCAGTGTTTTGATTCATCTCAAGGCTCCTCTTACAAGTGCAAGACAGAATGGCAGTAGAATCCCAGTATCTCAAAATTCTCGGGCTTCAGTAGACCTTGTTACAATCCTTGATGTTAGTGGCAGCATGGCAGGTACAAAGCTGGCTTTACTAAAGCGAGCCATGGGGTTTGTGGTGCAGAACCTTGGTCCCTCCGATCGGCTTTCTGTTATTGCCTTCTCCTCTACTGCCCGTCGGCTCTTTCCCCTTCGTCGCATGACTGACACTGGACGCCGGCAAGCATTGCAGGCTGTAAACTCTCTTGTGTCAAATGGTGGGACAAACATTGCTGAGGCTCTTAGGAAAGGTACCAAGGTTTTAGTAGACCGCAATTCGAAGAATGCTGTTTGCAGTATCATACTATTATCTGATGGGCAGGATACATATACTGTTTCTAGTCCCGGTGGGATTCATCCCCGTACAGATTACCAATCACTTCTCCCAATCTCTATCCGTCGCAATAATGCAGCAGGCTTGCATATTCCAGTTCACACATTTGGATTTGGTGCAGACCATGATGCTGCTTTGATGCATTCAATCTCTGAGGTTTCTGGGGGGACATTTTCTTTCATAGAAGCTGAAAACGTGATTCAGGATGCATTTGCACAGTGCATTGGGGGTCTTCTGAGTGTAGTGGTGCAAGAGCTGAATGTCACAATCGAGTGTGTTCACCAAAGTTTGCAATTGGGTTCAATAAAAGCTGGGAGTTATAAAACCAGCATGATGACTGATGCAAGAATGGGATCTATTGATGTTGGAGACCTATATGCTGAAGAAGAGAGGGATTTTTTGGTGACAATGAATATTCCAGTTGATGAGTCCAGTAATGTGATGTCACTAGTAAAGGTTAGATGTCTTTACAGAGACCCCATTACGAAAGAAATGGTCAATTTGAATGAAGCCGGTGAAGTCACAATCAAAAGGCCCGAAGTAGTTGGCCAACTACTAGTGTCGATGGAAGTAGACAGGCAACGCAACAGGCTTCATGCAGCTGAAACAATGGCCGAGGCCAGAGTAGCAGCTGAGGATGGTGACTTGGCTGGTGCAGTTTCTCTCCTGGAGAGCTGTCGTCGGGTATTGTCTGAAACTCCTTCTGCACAAGCAGGTGACCGCTTGTGTGTTGCACTTTCAGCCGAGTTAAAGGAGATGCAAGAAAGAATGGGAAACCGTCGTGCATATGAAGAAACAGGGAGGGCTTACGTTTTATCAGGATTAAGTTCACACTCATGGCAGAGGGCAACTGCTCGAGGTGATTCCACTGATAGCACAAGCCTTTTGCAATCGTACCAAACCCCATCAATGGTAGACATGGTGACCCGGTCGCAAACTATACTACTAGGGAATCCATCACCTCGACGAACCCTCAGCAGTGTTAAGTCATTTCCGGCCAAAGCACGGCCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

644

Amino Acids

70.21

Weight (kDa)

7.29

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 81 - 126 4.7e-07 Ring finger domain
zf-RING_11 PF17123 82 - 111 3.3e-07 RING-like zinc finger
zf-C3HC4 PF00097 82 - 125 1.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 84 - 126 8.3e-06 RING-H2 zinc finger domain
VWA_CoxE PF05762 266 - 384 3.1e-08 VWA domain containing CoxE-like protein
VWA PF00092 272 - 454 2.1e-22 von Willebrand factor type A domain
VWA_3 PF13768 272 - 443 1.3e-18 von Willebrand factor type A domain
VWA_2 PF13519 273 - 379 2.5e-19 von Willebrand factor type A domain
WAV3_C PF25243 574 - 643 3.6e-07 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint PF14624 623 - 696 4.9e-20 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60710
fragaria_vesca FvH4_3g31730 FvH4_3g31730
malus_domestica MD03G1121000.v1.1 MD11G1139800.v1.1
pyrus_communis pycom11g11540
rosa_chinensis RchiOBHm_Chr5g0058461
rosa_laevigata RLG00000035222
rosa_multiflora Rmu_sc0000367.1_g000122
rosa_roxburghii Rroxscaffold_1G00022080
rosa_rugosa Rorug05G0314900
rosa_samantha Rh5AG381400 Rh5BG392900 Rh5CG417100 Rh5DG408100
rosa_wichuraiana Rw5G035930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1236
AarI CACCTGC 1 cut(s) 1619
Acc16I TGCGCA 1 cut(s) 13
Acc36I ACCTGC 2 cut(s) 608, 1619
Acc65I GGTACC 1 cut(s) 833
AccB1I GGYRCC 1 cut(s) 833
AccI GTMKAC 4 cut(s) 579, 849, 1488, 1830
AciI CCGC 2 cut(s) 853, 1636
AclWI GGATC 1 cut(s) 1276
AcoI YGGCCR 4 cut(s) 1462, 1527, 1911, 1922
AcsI RAATTY 3 cut(s) 126, 261, 562
AcuI CTGAAG 3 cut(s) 472, 558, 1317
AcyI GRCGYC 1 cut(s) 757
AfaI GTAC 4 cut(s) 622, 835, 946, 1811
AfiI CCNNNNNNNGG 4 cut(s) 44, 684, 1825, 1920
AgsI TTSAA 4 cut(s) 392, 1062, 1218, 1420
AhlI ACTAGT 2 cut(s) 1363, 1471
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 2 cut(s) 37, 1581
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 1278, 1383
AlwI GGATC 1 cut(s) 1276
Ama87I CYCGRG 2 cut(s) 567, 1770
AoxI GGCC 8 cut(s) 224, 290, 1448, 1462, 1527, 1533, 1911, 1922
ApeKI GCWGC 5 cut(s) 609, 992, 1046, 1514, 1544
ApoI RAATTY 3 cut(s) 126, 261, 562
Asp718I GGTACC 1 cut(s) 833
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 3 cut(s) 225, 674, 1449
AsuC2I CCSGG 2 cut(s) 927, 1843
AsuHPI GGTGA 8 cut(s) 1187, 1330, 1442, 1568, 1643, 1787, 1849, 1866
AsuII TTCGAA 1 cut(s) 860
AvaI CYCGRG 2 cut(s) 567, 1770
AvaII GGWCC 1 cut(s) 674
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BalI TGGCCA 1 cut(s) 1464
BanI GGYRCC 1 cut(s) 833
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 1139
Bbv12I GWGCWC 1 cut(s) 74
BbvCI CCTCAGC 3 cut(s) 816, 1548, 1889
BbvI GCAGC 5 cut(s) 621, 1004, 1033, 1526, 1556
BccI CCATC 5 cut(s) 890, 1474, 1547, 1828, 1879
BciT130I CCWGG 2 cut(s) 39, 1583
BciVI GTATCC 1 cut(s) 898
BcnI CCSGG 2 cut(s) 927, 1843
BcoDI GTCTC 2 cut(s) 1278, 1383
BcuI ACTAGT 2 cut(s) 1363, 1471
BfaI CTAG 4 cut(s) 921, 1364, 1472, 1862
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 2 cut(s) 608, 1619
BfuI GTATCC 1 cut(s) 898
BisI GCNGC 5 cut(s) 610, 993, 1047, 1515, 1545
BlsI GCNGC 5 cut(s) 611, 994, 1048, 1516, 1546
Bme1390I CCNGG 4 cut(s) 39, 927, 1583, 1843
Bme18I GGWCC 1 cut(s) 674
BmeT110I CYCGRG 2 cut(s) 567, 1770
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 225, 674, 1449
BmiI GGNNCC 5 cut(s) 122, 227, 513, 676, 835
BmrFI CCNGG 4 cut(s) 39, 927, 1583, 1843
BmrI ACTGGG 2 cut(s) 128, 545
BmsI GCATC 7 cut(s) 226, 392, 1033, 1044, 1111, 1246, 1662
BmuI ACTGGG 2 cut(s) 128, 545
BpiI GAAGAC 1 cut(s) 1139
BpmI CTGGAG 1 cut(s) 1604
Bpu10I CCTNAGC 3 cut(s) 816, 1548, 1889
Bpu14I TTCGAA 1 cut(s) 860
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 2 cut(s) 927, 1843
BsaHI GRCGYC 1 cut(s) 757
BsaI GGTCTC 2 cut(s) 1278, 1383
BsaJI CCNNGG 4 cut(s) 648, 670, 837, 1530
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 684, 1825, 1920
Bse118I RCCGGY 3 cut(s) 288, 759, 1427
Bse1I ACTGG 6 cut(s) 134, 551, 757, 1010, 1334, 1347
Bse3DI GCAATG 2 cut(s) 767, 810
BseBI CCWGG 2 cut(s) 39, 1583
BseDI CCNNGG 4 cut(s) 648, 670, 837, 1530
BseGI GGATG 4 cut(s) 249, 937, 1126, 1558
BseLI CCNNNNNNNGG 4 cut(s) 44, 684, 1825, 1920
BseMI GCAATG 2 cut(s) 767, 810
BseMII CTCAG 5 cut(s) 807, 1059, 1142, 1539, 1903
BseNI ACTGG 6 cut(s) 134, 551, 757, 1010, 1334, 1347
BseRI GAGGAG 2 cut(s) 504, 697
BseXI GCAGC 5 cut(s) 621, 1004, 1033, 1526, 1556
BseYI CCCAGC 1 cut(s) 1226
BsgI GTGCAG 4 cut(s) 683, 1053, 1590, 1605
Bsh1285I CGRYCG 2 cut(s) 685, 1847
BshFI GGCC 8 cut(s) 226, 292, 1450, 1464, 1529, 1535, 1913, 1924
BshNI GGYRCC 1 cut(s) 833
BsiEI CGRYCG 2 cut(s) 685, 1847
BsiHKAI GWGCWC 1 cut(s) 74
BsiHKCI CYCGRG 2 cut(s) 567, 1770
BsiSI CCGG 6 cut(s) 289, 760, 927, 1428, 1843, 1910
BslFI GGGAC 4 cut(s) 660, 817, 909, 1096
BslI CCNNNNNNNGG 4 cut(s) 44, 684, 1825, 1920
BsmAI GTCTC 2 cut(s) 1278, 1383
BsmFI GGGAC 4 cut(s) 660, 817, 909, 1096
BsmI GAATGC 2 cut(s) 871, 1057
BsnI GGCC 8 cut(s) 226, 292, 1450, 1464, 1529, 1535, 1913, 1924
Bso31I GGTCTC 2 cut(s) 1278, 1383
BsoBI CYCGRG 2 cut(s) 567, 1770
Bsp119I TTCGAA 1 cut(s) 860
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 5 cut(s) 184, 394, 467, 682, 1268
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 2 cut(s) 853, 1636
BspANI GGCC 8 cut(s) 226, 292, 1450, 1464, 1529, 1535, 1913, 1924
BspCNI CTCAG 5 cut(s) 808, 1060, 1143, 1540, 1902
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 5 cut(s) 122, 227, 513, 676, 835
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 2 cut(s) 608, 1619
BspPI GGATC 1 cut(s) 1276
BspT104I TTCGAA 1 cut(s) 860
BspT107I GGYRCC 1 cut(s) 833
BspTNI GGTCTC 2 cut(s) 1278, 1383
BsrDI GCAATG 2 cut(s) 767, 810
BsrFI RCCGGY 3 cut(s) 288, 759, 1427
BsrI ACTGG 6 cut(s) 134, 551, 757, 1010, 1334, 1347
BssAI RCCGGY 3 cut(s) 288, 759, 1427
BssECI CCNNGG 4 cut(s) 648, 670, 837, 1530
BssMI GATC 5 cut(s) 184, 394, 467, 682, 1268
BssNI GRCGYC 1 cut(s) 757
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 3 cut(s) 648, 670, 837
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 39, 1583
Bst4CI ACNGT 4 cut(s) 250, 916, 1134, 1694
Bst6I CTCTTC 1 cut(s) 1296
BstACI GRCGYC 1 cut(s) 757
BstAPI GCANNNNNTGC 1 cut(s) 769
BstBI TTCGAA 1 cut(s) 860
BstC8I GCNNGC 9 cut(s) 51, 290, 630, 645, 761, 765, 774, 997, 1001
BstDEI CTNAG 7 cut(s) 349, 816, 824, 1068, 1151, 1548, 1889
BstDSI CCRYGG 1 cut(s) 648
BstEII GGTNACC 2 cut(s) 1631, 1837
BstF5I GGATG 4 cut(s) 249, 937, 1126, 1558
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 5 cut(s) 187, 397, 470, 685, 1271
BstMAI GTCTC 2 cut(s) 1278, 1383
BstMBI GATC 5 cut(s) 184, 394, 467, 682, 1268
BstMCI CGRYCG 2 cut(s) 685, 1847
BstMWI GCNNNNNNNGC 5 cut(s) 138, 769, 773, 1541, 1655
BstNI CCWGG 2 cut(s) 39, 1583
BstNSI RCATGY 1 cut(s) 53
BstPI GGTNACC 2 cut(s) 1631, 1837
BstSCI CCNGG 4 cut(s) 37, 925, 1581, 1841
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 5 cut(s) 621, 1004, 1033, 1526, 1556
BstV2I GAAGAC 1 cut(s) 1139
BstX2I RGATCY 1 cut(s) 1268
BstYI RGATCY 1 cut(s) 1268
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 8 cut(s) 226, 292, 1450, 1464, 1529, 1535, 1913, 1924
BtgI CCRYGG 1 cut(s) 648
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 4 cut(s) 249, 937, 1126, 1558
BtsI GCAGTG 2 cut(s) 91, 1900
BtsIMutI CAGTG 6 cut(s) 91, 496, 750, 1139, 1782, 1900
BveI ACCTGC 2 cut(s) 608, 1619
Cac8I GCNNGC 9 cut(s) 51, 290, 630, 645, 761, 765, 774, 997, 1001
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 3 cut(s) 288, 759, 1427
Cfr13I GGNCC 3 cut(s) 225, 674, 1449
CseI GACGC 1 cut(s) 765
Csp6I GTAC 4 cut(s) 621, 834, 945, 1810
CviQI GTAC 4 cut(s) 621, 834, 945, 1810
DdeI CTNAG 7 cut(s) 349, 816, 824, 1068, 1151, 1548, 1889
DpnI GATC 5 cut(s) 186, 396, 469, 684, 1270
DpnII GATC 5 cut(s) 184, 394, 467, 682, 1268
EaeI YGGCCR 4 cut(s) 1462, 1527, 1911, 1922
Eam1104I CTCTTC 1 cut(s) 1296
EarI CTCTTC 1 cut(s) 1296
Eco130I CCWWGG 3 cut(s) 648, 670, 837
Eco31I GGTCTC 2 cut(s) 1278, 1383
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 3 cut(s) 472, 558, 1317
Eco88I CYCGRG 2 cut(s) 567, 1770
Eco91I GGTNACC 2 cut(s) 1631, 1837
EcoO65I GGTNACC 2 cut(s) 1631, 1837
EcoRII CCWGG 2 cut(s) 37, 1581
EcoT14I CCWWGG 3 cut(s) 648, 670, 837
EcoT22I ATGCAT 3 cut(s) 241, 1059, 1126
ErhI CCWWGG 3 cut(s) 648, 670, 837
FaqI GGGAC 4 cut(s) 660, 817, 909, 1096
FauNDI CATATG 1 cut(s) 1702
FblI GTMKAC 4 cut(s) 579, 849, 1488, 1830
Fnu4HI GCNGC 5 cut(s) 610, 993, 1047, 1515, 1545
FokI GGATG 4 cut(s) 256, 924, 1133, 1565
Fsp4HI GCNGC 5 cut(s) 610, 993, 1047, 1515, 1545
FspBI CTAG 4 cut(s) 921, 1364, 1472, 1862
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 610, 993, 1047, 1515, 1545
GsaI CCCAGC 1 cut(s) 1230
GsuI CTGGAG 1 cut(s) 1604
HaeIII GGCC 8 cut(s) 226, 292, 1450, 1464, 1529, 1535, 1913, 1924
HapII CCGG 6 cut(s) 289, 760, 927, 1428, 1843, 1910
HgaI GACGC 1 cut(s) 765
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 757
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 9 cut(s) 320, 423, 499, 546, 934, 1114, 1343, 1778, 1867
HpaII CCGG 6 cut(s) 289, 760, 927, 1428, 1843, 1910
HphI GGTGA 8 cut(s) 1187, 1330, 1442, 1568, 1643, 1787, 1849, 1866
Hpy166II GTNNAC 9 cut(s) 280, 580, 781, 850, 1015, 1195, 1489, 1745, 1831
Hpy188I TCNGA 8 cut(s) 171, 184, 399, 682, 895, 1069, 1152, 1609
Hpy188III TCNNGA 5 cut(s) 317, 446, 479, 1118, 1734
Hpy8I GTNNAC 9 cut(s) 280, 580, 781, 850, 1015, 1195, 1489, 1745, 1831
Hpy99I CGWCG 6 cut(s) 723, 741, 984, 1599, 1698, 1884
HpyAV CCTTC 3 cut(s) 712, 743, 1626
HpyCH4III ACNGT 4 cut(s) 250, 916, 1134, 1694
HpyCH4IV ACGT 3 cut(s) 282, 1110, 1725
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 769, 773, 1541, 1655
HpyF3I CTNAG 7 cut(s) 349, 816, 824, 1068, 1151, 1548, 1889
HpySE526I ACGT 3 cut(s) 282, 1110, 1725
Hsp92I GRCGYC 1 cut(s) 757
HspAI GCGC 1 cut(s) 12
KpnI GGTACC 1 cut(s) 837
KroI GCCGGC 2 cut(s) 288, 759
KroNI GCCGGC 2 cut(s) 290, 761
Kzo9I GATC 5 cut(s) 184, 394, 467, 682, 1268
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 5 cut(s) 621, 1004, 1033, 1526, 1556
LweI GCATC 7 cut(s) 226, 392, 1033, 1044, 1111, 1246, 1662
MaeI CTAG 4 cut(s) 921, 1364, 1472, 1862
MaeII ACGT 3 cut(s) 282, 1110, 1725
MaeIII GTNAC 8 cut(s) 586, 1177, 1318, 1359, 1435, 1556, 1631, 1837
MalI GATC 5 cut(s) 186, 396, 469, 684, 1270
MboI GATC 5 cut(s) 184, 394, 467, 682, 1268
MboII GAAGA 6 cut(s) 404, 874, 1139, 1310, 1313, 1718
MfeI CAATTG 2 cut(s) 412, 1208
MflI RGATCY 1 cut(s) 1268
MhlI GDGCHC 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 1464
MluCI AATT 9 cut(s) 126, 207, 220, 261, 412, 562, 856, 1208, 1414
MluNI TGGCCA 1 cut(s) 1464
MlyI GAGTC 1 cut(s) 1352
MmeI TCCRAC 1 cut(s) 1261
Mox20I TGGCCA 1 cut(s) 1464
Mph1103I ATGCAT 3 cut(s) 241, 1059, 1126
MroNI GCCGGC 2 cut(s) 288, 759
MscI TGGCCA 1 cut(s) 1464
MseI TTAA 7 cut(s) 23, 210, 462, 1664, 1739, 1899, 1930
MslI CAYNNNNRTG 3 cut(s) 48, 371, 1750
Msp20I TGGCCA 1 cut(s) 1464
MspA1I CMGCKG 3 cut(s) 458, 1517, 1547
MspI CCGG 6 cut(s) 289, 760, 927, 1428, 1843, 1910
MspR9I CCNGG 4 cut(s) 39, 927, 1583, 1843
MunI CAATTG 2 cut(s) 412, 1208
Mva1269I GAATGC 2 cut(s) 871, 1057
MvaI CCWGG 2 cut(s) 39, 1583
MwoI GCNNNNNNNGC 5 cut(s) 138, 769, 773, 1541, 1655
NaeI GCCGGC 2 cut(s) 290, 761
NciI CCSGG 2 cut(s) 927, 1843
NcoI CCATGG 1 cut(s) 648
NdeI CATATG 1 cut(s) 1702
NdeII GATC 5 cut(s) 184, 394, 467, 682, 1268
NgoMIV GCCGGC 2 cut(s) 288, 759
NlaIV GGNNCC 5 cut(s) 122, 227, 513, 676, 835
NmeAIII GCCGAG 2 cut(s) 1555, 1684
NmuCI GTSAC 7 cut(s) 1177, 1318, 1359, 1435, 1556, 1631, 1837
NsbI TGCGCA 1 cut(s) 13
NsiI ATGCAT 3 cut(s) 241, 1059, 1126
NspI RCATGY 1 cut(s) 53
NspV TTCGAA 1 cut(s) 860
PaeI GCATGC 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 1770
PagI TCATGA 1 cut(s) 478
PaqCI CACCTGC 1 cut(s) 1619
PctI GAATGC 2 cut(s) 871, 1057
PdiI GCCGGC 2 cut(s) 290, 761
PfeI GAWTC 8 cut(s) 320, 423, 499, 546, 934, 1114, 1778, 1867
PflFI GACNNNGTC 1 cut(s) 1843
PfoI TCCNGGA 1 cut(s) 1581
PkrI GCNGC 5 cut(s) 611, 994, 1048, 1516, 1546
Ple19I CGATCG 1 cut(s) 685
PleI GAGTC 1 cut(s) 1351
PpsI GAGTC 1 cut(s) 1351
PsiI TTATAA 1 cut(s) 1236
Psp6I CCWGG 2 cut(s) 37, 1581
PspEI GGTNACC 2 cut(s) 1631, 1837
PspFI CCCAGC 1 cut(s) 1226
PspGI CCWGG 2 cut(s) 37, 1581
PspN4I GGNNCC 5 cut(s) 122, 227, 513, 676, 835
PspPI GGNCC 3 cut(s) 225, 674, 1449
PspXI VCTCGAGB 1 cut(s) 1770
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 1268
PsyI GACNNNGTC 1 cut(s) 1843
PvuI CGATCG 1 cut(s) 685
PvuII CAGCTG 3 cut(s) 458, 1517, 1547
RsaI GTAC 4 cut(s) 622, 835, 946, 1811
RsaNI GTAC 4 cut(s) 621, 834, 945, 1810
RseI CAYNNNNRTG 3 cut(s) 48, 371, 1750
SaqAI TTAA 7 cut(s) 23, 210, 462, 1664, 1739, 1899, 1930
SatI GCNGC 5 cut(s) 610, 993, 1047, 1515, 1545
Sau3AI GATC 5 cut(s) 184, 394, 467, 682, 1268
Sau96I GGNCC 3 cut(s) 225, 674, 1449
SchI GAGTC 1 cut(s) 1352
ScrFI CCNGG 4 cut(s) 39, 927, 1583, 1843
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 7 cut(s) 226, 392, 1033, 1044, 1111, 1246, 1662
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 1770
SfuI TTCGAA 1 cut(s) 860
SinI GGWCC 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 1770
SmiMI CAYNNNNRTG 3 cut(s) 48, 371, 1750
SmlI CTYRAG 2 cut(s) 506, 1770
SmoI CTYRAG 2 cut(s) 506, 1770
SpeI ACTAGT 2 cut(s) 1363, 1471
SphI GCATGC 1 cut(s) 53
Sse9I AATT 9 cut(s) 126, 207, 220, 261, 412, 562, 856, 1208, 1414
SsiI CCGC 2 cut(s) 853, 1636
SspI AATATT 1 cut(s) 1330
SspMI CTAG 4 cut(s) 921, 1364, 1472, 1862
StyD4I CCNGG 4 cut(s) 37, 925, 1581, 1841
StyI CCWWGG 3 cut(s) 648, 670, 837
TaaI ACNGT 4 cut(s) 250, 916, 1134, 1694
TaiI ACGT 3 cut(s) 285, 1113, 1728
TaqI TCGA 5 cut(s) 860, 1185, 1478, 1771, 1879
TasI AATT 9 cut(s) 126, 207, 220, 261, 412, 562, 856, 1208, 1414
TfiI GAWTC 8 cut(s) 320, 423, 499, 546, 934, 1114, 1778, 1867
Tru1I TTAA 7 cut(s) 23, 210, 462, 1664, 1739, 1899, 1930
Tru9I TTAA 7 cut(s) 23, 210, 462, 1664, 1739, 1899, 1930
TscAI CASTG 6 cut(s) 98, 496, 757, 1139, 1789, 1900
TseFI GTSAC 7 cut(s) 1177, 1318, 1359, 1435, 1556, 1631, 1837
TseI GCWGC 5 cut(s) 609, 992, 1046, 1514, 1544
Tsp45I GTSAC 7 cut(s) 1177, 1318, 1359, 1435, 1556, 1631, 1837
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 6 cut(s) 98, 496, 757, 1139, 1789, 1900
Tth111I GACNNNGTC 1 cut(s) 1843
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 3 cut(s) 126, 261, 562
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XhoI CTCGAG 1 cut(s) 1770
XmiI GTMKAC 4 cut(s) 579, 849, 1488, 1830
XspI CTAG 4 cut(s) 921, 1364, 1472, 1862
Zsp2I ATGCAT 3 cut(s) 241, 1059, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.