AT5G60940

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004638
Physical Location & Seq
Forward (+)
24522953 .. 24526113
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60940.2

Sequence Viewer

Length: 1290 bp
ATGGGGAATAGTGGAGATTTGGAGCAGGCTCTGCAAGATGGGAATATCTTTAGACAGCTCAATGCTCTTATTGTAGCTCATCTCCGTCATCACAATCTCTCACAAGTTGCAAGTGCGGTTGCTTCAGCAACAATGACACCATTGAATATTGAGGTTCCTCCAAACCGTCTTTTGGAGCTTGTTGCAAAGGGTCTTGCAGCGGAGAACAATGGGACATTGAGAGGTGTTTCTTCATCAGTCTTGTTACCTTCTTCTTATGGATCAATCACTACTCCTCGAACAGCTTCTATCGACTTTAGTGTTAATCATGCGAAGGGCTCATCAAAGACTATCCCAAAGCATGAATCAAAGACGCTATCAGAGCACAAGAGCGTTGTTAGGTGTGCAAGATTTAGTCCTGATGGAATGTTTTTTGCTACTGGTGGTGCAGACACATCTATTAAGCTCTTTGAGGTGCCAAAAGTTAAACAGATGATTTCAGGAGATACTCAAGCTCGACCATTAATACGGACTTTTTATGATCATGCTGAACCGATAAACGATCTTGATTTCCACCCTCGGAGCACAATCCTAATATCTAGTGCCAAAGACAACTGTATAAAGTTCTTCGACTTCTCCAAAACCACGGCTAAACGAGCATTCAAAGTTTTTCAGGATACCCATAACGTGCGCTCTATATCTTTTCATCCGTCAGGAGAGTTTCTTCTTGCAGGAACCGATCATCCAATTCCACATCTGTACGATGTAAACACATATCAGTGCTTTCTTCCTTCAAACTTCCCTGACAGTGGAGTAAGTGGAGCCATTAATCAGGTGAGATATTCTTCCACGGGATCCATCTACATTACAGCCTCAAAGGATGGAGCTATTCGACTCTTTGACGGGGTTAGCGCAAAGTGTGTTCGCTCCATTGGCAATGCACATGGAAAATCAGAGGTCACAAGCGCAGTGTTCACTAAAGATCAAAGGTTTGTTCTCTCATCCGGTAAGGATTCCACAGTTAAGTTATGGGAAATAGGCTCAGGTCGAATGGTAAAGGAATATCTTGGAGCAAAGCGGGTAAAACTGCGGTCTCAGGCAATTTTTAACGACACTGAAGAGTTTGTAATCTCCATAGATGAAGCAAGCAATGAGGTCGTTACATGGGATGCTAGAACCGCAGATAAAGTGGCAAAGTGGCCTTCTAACCATAACGGTGCACCACGGTGGATCGAGCACTCGCCGGTTGAATCAGTCTTTGTTACTTGTGGAATAGATAGATCAATTCGGTTCTGGAAGGAATCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
WD40

Protein Analysis

429

Amino Acids

47.06

Weight (kDa)

8.94

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 15 - 202 2.4e-11 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 20 - 118 9.2e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 23 - 150 1.4e-15 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 23 - 215 3.4e-17 WDHD1 first WD40 domain
WD40 PF00400 24 - 58 8.5e-08 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 24 - 126 7.3e-07 TEP-1 second beta-propeller
WD40_Gbeta PF25391 24 - 245 1e-12 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 24 - 63 8.5e-06 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 25 - 121 3.3e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 25 - 162 5e-10 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 26 - 224 1.6e-23 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 26 - 334 7e-49 WDR5 beta-propeller domain
NBCH_WD40 PF20426 27 - 248 4e-06 Neurobeachin beta propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 70 - 144 2e-09 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 76 - 112 1.6e-06 WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd PF24782 76 - 246 3.7e-08 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 77 - 162 8.3e-09 THOC3 beta-propeller domain
EIF3I PF24805 79 - 290 1.9e-13 EIF3I
WDR55 PF24796 85 - 162 9e-06 WDR55
Beta-prop_EML_2 PF23414 90 - 267 7.5e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 97 - 334 1.3e-08 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 119 - 272 8.6e-16 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 121 - 254 4.3e-10 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 172 - 334 3.8e-15 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 174 - 245 5.8e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 175 - 259 3.6e-08 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 175 - 257 5.8e-07 WDHD1 first WD40 domain
WDR55 PF24796 185 - 248 2.5e-07 WDR55
WD40 PF00400 207 - 245 4.7e-06 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 221 - 336 9.1e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 226 - 333 9.9e-07 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AciI CCGC 5 cut(s) 116, 200, 1057, 1069, 1158
AclWI GGATC 4 cut(s) 268, 828, 841, 1217
AcuI CTGAAG 2 cut(s) 108, 1116
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 2 cut(s) 172, 788
AgsI TTSAA 4 cut(s) 145, 643, 774, 1229
AleI CACNNNNGTG 1 cut(s) 1204
AloI GAACNNNNNNTCC 2 cut(s) 706, 738
AluBI AGCT 7 cut(s) 58, 77, 178, 284, 445, 494, 866
AluI AGCT 7 cut(s) 58, 77, 178, 284, 445, 494, 866
Alw21I GWGCWC 4 cut(s) 366, 566, 1201, 1218
Alw26I GTCTC 1 cut(s) 1077
Alw44I GTGCAC 1 cut(s) 1197
AlwI GGATC 4 cut(s) 268, 828, 841, 1217
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 1 cut(s) 1178
ApaLI GTGCAC 1 cut(s) 1197
ApeKI GCWGC 1 cut(s) 197
AseI ATTAAT 2 cut(s) 503, 807
Asp700I GAANNNNTTC 1 cut(s) 283
AspLEI GCGC 3 cut(s) 672, 893, 947
AsuHPI GGTGA 1 cut(s) 826
BaeGI GKGCMC 1 cut(s) 1201
BamHI GGATCC 1 cut(s) 833
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 320
Bbv12I GWGCWC 4 cut(s) 366, 566, 1201, 1218
BbvI GCAGC 1 cut(s) 209
BccI CCATC 4 cut(s) 32, 395, 845, 854
BceAI ACGGC 1 cut(s) 642
BcgI CGANNNNNNTGC 2 cut(s) 1117, 1151
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 1077
BfaI CTAG 2 cut(s) 579, 1152
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmiI GGNNCC 5 cut(s) 156, 456, 715, 802, 835
BmsI GCATC 1 cut(s) 1138
Bpu10I CCTNAGC 1 cut(s) 1021
BpuEI CTTGAG 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 1077
BsaJI CCNNGG 4 cut(s) 557, 624, 828, 1202
BsaWI WCCGGW 1 cut(s) 983
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 788
Bse118I RCCGGY 1 cut(s) 1222
Bse1I ACTGG 1 cut(s) 424
Bse3DI GCAATG 2 cut(s) 922, 1135
BseDI CCNNGG 4 cut(s) 557, 624, 828, 1202
BseGI GGATG 5 cut(s) 685, 721, 865, 980, 1153
BseLI CCNNNNNNNGG 2 cut(s) 172, 788
BseMI GCAATG 2 cut(s) 922, 1135
BseMII CTCAG 2 cut(s) 1035, 1088
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 1201
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 1 cut(s) 1180
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 4 cut(s) 366, 566, 1201, 1218
BsiSI CCGG 2 cut(s) 984, 1223
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 172, 788
BsmAI GTCTC 1 cut(s) 1077
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 1 cut(s) 1180
Bso31I GGTCTC 1 cut(s) 1077
Bsp1286I GDGCHC 5 cut(s) 320, 366, 566, 1201, 1218
Bsp143I GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
BspACI CCGC 5 cut(s) 116, 200, 1057, 1069, 1158
BspANI GGCC 1 cut(s) 1180
BspCNI CTCAG 2 cut(s) 1034, 1087
BspLI GGNNCC 5 cut(s) 156, 456, 715, 802, 835
BspPI GGATC 4 cut(s) 268, 828, 841, 1217
BspT107I GGYRCC 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 1077
BsrDI GCAATG 2 cut(s) 922, 1135
BsrFI RCCGGY 1 cut(s) 1222
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 1222
BssECI CCNNGG 4 cut(s) 557, 624, 828, 1202
BssMI GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
Bst4CI ACNGT 6 cut(s) 167, 596, 788, 1000, 1196, 1206
Bst6I CTCTTC 1 cut(s) 1092
BstAPI GCANNNNNTGC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 27, 1126
BstDEI CTNAG 2 cut(s) 1021, 1074
BstDSI CCRYGG 3 cut(s) 624, 828, 1202
BstF5I GGATG 5 cut(s) 685, 721, 865, 980, 1153
BstHHI GCGC 3 cut(s) 672, 893, 947
BstKTI GATC 8 cut(s) 263, 523, 544, 721, 836, 964, 1212, 1262
BstMAI GTCTC 1 cut(s) 1077
BstMBI GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
BstMWI GCNNNNNNNGC 5 cut(s) 31, 361, 635, 912, 1157
BstSLI GKGCMC 1 cut(s) 1201
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 1 cut(s) 1180
BtgI CCRYGG 3 cut(s) 624, 828, 1202
BtsCI GGATG 5 cut(s) 685, 721, 865, 980, 1153
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 4 cut(s) 764, 793, 954, 1092
Cac8I GCNNGC 2 cut(s) 27, 1126
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 3 cut(s) 672, 893, 947
Cfr10I RCCGGY 1 cut(s) 1222
CseI GACGC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 739
CviAII CATG 5 cut(s) 308, 341, 524, 923, 1143
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 2 cut(s) 1021, 1074
DpnI GATC 8 cut(s) 262, 522, 543, 720, 835, 963, 1211, 1261
DpnII GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
Eam1104I CTCTTC 1 cut(s) 1092
EarI CTCTTC 1 cut(s) 1092
Eco24I GRGCYC 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 1077
Eco57I CTGAAG 2 cut(s) 108, 1116
EcoT38I GRGCYC 1 cut(s) 320
FaeI CATG 5 cut(s) 311, 344, 527, 926, 1146
FaqI GGGAC 1 cut(s) 226
FatI CATG 5 cut(s) 307, 340, 523, 922, 1142
FauI CCCGC 1 cut(s) 1050
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 5 cut(s) 672, 708, 872, 967, 1160
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 579, 1152
GlaI GCGC 3 cut(s) 671, 892, 946
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 1180
HapII CCGG 2 cut(s) 984, 1223
HgaI GACGC 1 cut(s) 361
HhaI GCGC 3 cut(s) 672, 893, 947
Hin1II CATG 5 cut(s) 311, 344, 527, 926, 1146
Hin6I GCGC 3 cut(s) 670, 891, 945
HinP1I GCGC 3 cut(s) 670, 891, 945
HinfI GANTC 5 cut(s) 344, 873, 992, 1229, 1280
HpaII CCGG 2 cut(s) 984, 1223
HphI GGTGA 1 cut(s) 826
Hpy166II GTNNAC 3 cut(s) 748, 954, 1199
Hpy188I TCNGA 3 cut(s) 361, 561, 934
Hpy188III TCNNGA 6 cut(s) 398, 480, 545, 653, 693, 1273
Hpy8I GTNNAC 3 cut(s) 748, 954, 1199
HpyAV CCTTC 5 cut(s) 258, 307, 780, 1191, 1270
HpyCH4III ACNGT 6 cut(s) 167, 596, 788, 1000, 1196, 1206
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 9 cut(s) 34, 110, 185, 197, 386, 428, 710, 920, 1199
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 361, 635, 912, 1157
HpyF3I CTNAG 2 cut(s) 1021, 1074
HpySE526I ACGT 1 cut(s) 666
Hsp92II CATG 5 cut(s) 311, 344, 527, 926, 1146
HspAI GCGC 3 cut(s) 670, 891, 945
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
LmnI GCTCC 7 cut(s) 22, 175, 561, 800, 863, 911, 1049
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 1138
MaeI CTAG 2 cut(s) 579, 1152
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 4 cut(s) 243, 937, 1138, 1240
MalI GATC 8 cut(s) 262, 522, 543, 720, 835, 963, 1211, 1261
MboI GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
MboII GAAGA 7 cut(s) 222, 243, 598, 695, 758, 816, 1109
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 5 cut(s) 320, 366, 566, 1201, 1218
MluCI AATT 3 cut(s) 726, 1080, 1263
MlyI GAGTC 1 cut(s) 867
MnlI CCTC 9 cut(s) 145, 168, 215, 285, 445, 567, 862, 928, 1126
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 7 cut(s) 303, 441, 465, 503, 807, 1002, 1086
MslI CAYNNNNRTG 3 cut(s) 757, 1194, 1204
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 984, 1223
Mva1269I GAATGC 1 cut(s) 638
MwoI GCNNNNNNNGC 5 cut(s) 31, 361, 635, 912, 1157
NdeII GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
NlaIII CATG 5 cut(s) 311, 344, 527, 926, 1146
NlaIV GGNNCC 5 cut(s) 156, 456, 715, 802, 835
NmuCI GTSAC 1 cut(s) 937
OliI CACNNNNGTG 1 cut(s) 1204
PctI GAATGC 1 cut(s) 638
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 4 cut(s) 344, 992, 1229, 1280
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 867
PpsI GAGTC 1 cut(s) 867
PshBI ATTAAT 2 cut(s) 503, 807
PspN4I GGNNCC 5 cut(s) 156, 456, 715, 802, 835
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 833
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
RseI CAYNNNNRTG 3 cut(s) 757, 1194, 1204
SaqAI TTAA 7 cut(s) 303, 441, 465, 503, 807, 1002, 1086
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 8 cut(s) 260, 520, 541, 718, 833, 961, 1209, 1259
SchI GAGTC 1 cut(s) 867
SduI GDGCHC 5 cut(s) 320, 366, 566, 1201, 1218
SfaNI GCATC 1 cut(s) 1138
SmiMI CAYNNNNRTG 3 cut(s) 757, 1194, 1204
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 3 cut(s) 726, 1080, 1263
SsiI CCGC 5 cut(s) 116, 200, 1057, 1069, 1158
SspI AATATT 1 cut(s) 148
SspMI CTAG 2 cut(s) 579, 1152
TaaI ACNGT 6 cut(s) 167, 596, 788, 1000, 1196, 1206
TaiI ACGT 1 cut(s) 669
TaqI TCGA 7 cut(s) 277, 291, 496, 609, 871, 1027, 1212
TasI AATT 3 cut(s) 726, 1080, 1263
TfiI GAWTC 4 cut(s) 344, 992, 1229, 1280
Tru1I TTAA 7 cut(s) 303, 441, 465, 503, 807, 1002, 1086
Tru9I TTAA 7 cut(s) 303, 441, 465, 503, 807, 1002, 1086
TscAI CASTG 4 cut(s) 764, 793, 954, 1099
TseFI GTSAC 1 cut(s) 937
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 937
TspDTI ATGAA 4 cut(s) 222, 357, 674, 1134
TspGWI ACGGA 4 cut(s) 74, 523, 678, 1273
TspRI CASTG 4 cut(s) 764, 793, 954, 1099
VneI GTGCAC 1 cut(s) 1197
VspI ATTAAT 2 cut(s) 503, 807
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 2 cut(s) 579, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.