cleavage stimulation factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60940 AT5G60940 |
| fragaria_vesca | FvH4_5g13570 FvH4_5g13570 FvH4_5g13570 FvH4_5g13570 |
| malus_domestica | MD06G1203600.v1.1 |
| prunus_persica | Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 |
| pyrus_communis | pycom06g18170 |
| rosa_chinensis | RchiOBHm_Chr7g0183371 |
| rosa_laevigata | RLG00000005052 |
| rosa_multiflora | Rmu_sc0000951.1_g000013 Rmu_sc0034749.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00270500 |
| rosa_rugosa | Rorug06G0457100 Rorug06G0457200 Rorug06G0457300 Rorug06G0457400 Rorug06G0457500 |
| rosa_samantha | Rh7AG058600 Rh7BG058600 Rh7CG060200 Rh7DG058300 |
| rosa_wichuraiana | Rw7G004820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 1225, 1254 |
| AcoI | YGGCCR | 1 cut(s) | 1199 |
| AcsI | RAATTY | 2 cut(s) | 970, 1121 |
| AcuI | CTGAAG | 2 cut(s) | 102, 1269 |
| AdeI | CACNNNGTG | 1 cut(s) | 688 |
| AfaI | GTAC | 4 cut(s) | 247, 532, 924, 1128 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 193 |
| AflIII | ACRYGT | 1 cut(s) | 444 |
| AgeI | ACCGGT | 1 cut(s) | 851 |
| AgsI | TTSAA | 2 cut(s) | 29, 273 |
| AjiI | CACGTC | 1 cut(s) | 447 |
| AjnI | CCWGG | 3 cut(s) | 96, 315, 672 |
| Alw21I | GWGCWC | 4 cut(s) | 54, 378, 943, 1239 |
| Alw26I | GTCTC | 1 cut(s) | 350 |
| Alw44I | GTGCAC | 1 cut(s) | 939 |
| Ama87I | CYCGRG | 1 cut(s) | 1232 |
| AoxI | GGCC | 2 cut(s) | 184, 1199 |
| ApaLI | GTGCAC | 1 cut(s) | 939 |
| ApeKI | GCWGC | 2 cut(s) | 9, 101 |
| ApoI | RAATTY | 2 cut(s) | 970, 1121 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 317, 349, 974, 1006 |
| AsiGI | ACCGGT | 1 cut(s) | 851 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1012 |
| AspS9I | GGNCC | 2 cut(s) | 184, 509 |
| AsuC2I | CCSGG | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 3 cut(s) | 86, 220, 1233 |
| AvaI | CYCGRG | 1 cut(s) | 1232 |
| AvaII | GGWCC | 1 cut(s) | 509 |
| BaeGI | GKGCMC | 1 cut(s) | 943 |
| BalI | TGGCCA | 1 cut(s) | 1201 |
| BanII | GRGCYC | 2 cut(s) | 54, 587 |
| Bbv12I | GWGCWC | 4 cut(s) | 54, 378, 943, 1239 |
| BbvI | GCAGC | 2 cut(s) | 21, 88 |
| BccI | CCATC | 8 cut(s) | 265, 372, 407, 500, 582, 875, 896, 1210 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1245, 1279 |
| BciT130I | CCWGG | 3 cut(s) | 98, 317, 674 |
| BciVI | GTATCC | 1 cut(s) | 670 |
| BclI | TGATCA | 1 cut(s) | 739 |
| BcnI | CCSGG | 1 cut(s) | 152 |
| BcoDI | GTCTC | 1 cut(s) | 350 |
| BfaI | CTAG | 1 cut(s) | 1067 |
| BfmI | CTRYAG | 1 cut(s) | 43 |
| BfuI | GTATCC | 1 cut(s) | 670 |
| BisI | GCNGC | 3 cut(s) | 10, 102, 1254 |
| BlsI | GCNGC | 3 cut(s) | 11, 103, 1255 |
| Bme1390I | CCNGG | 4 cut(s) | 98, 152, 317, 674 |
| Bme18I | GGWCC | 1 cut(s) | 509 |
| BmeT110I | CYCGRG | 1 cut(s) | 1232 |
| BmgBI | CACGTC | 1 cut(s) | 447 |
| BmgT120I | GGNCC | 2 cut(s) | 184, 509 |
| BmrFI | CCNGG | 4 cut(s) | 98, 152, 317, 674 |
| BmsI | GCATC | 3 cut(s) | 22, 477, 1159 |
| BpmI | CTGGAG | 1 cut(s) | 621 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| BpuMI | CCSGG | 1 cut(s) | 152 |
| BsaAI | YACGTR | 1 cut(s) | 530 |
| BsaBI | GATNNNNATC | 2 cut(s) | 573, 1160 |
| BsaJI | CCNNGG | 3 cut(s) | 294, 978, 1134 |
| BsaWI | WCCGGW | 1 cut(s) | 851 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 193 |
| Bse118I | RCCGGY | 2 cut(s) | 277, 851 |
| Bse1I | ACTGG | 5 cut(s) | 436, 778, 915, 963, 1048 |
| Bse3DI | GCAATG | 1 cut(s) | 1156 |
| Bse8I | GATNNNNATC | 2 cut(s) | 573, 1160 |
| BseBI | CCWGG | 3 cut(s) | 98, 317, 674 |
| BseDI | CCNNGG | 3 cut(s) | 294, 978, 1134 |
| BseGI | GGATG | 7 cut(s) | 574, 706, 742, 907, 1144, 1174, 1202 |
| BseJI | GATNNNNATC | 2 cut(s) | 573, 1160 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BseMI | GCAATG | 1 cut(s) | 1156 |
| BseMII | CTCAG | 1 cut(s) | 593 |
| BseNI | ACTGG | 5 cut(s) | 436, 778, 915, 963, 1048 |
| BseSI | GKGCMC | 1 cut(s) | 943 |
| BseXI | GCAGC | 2 cut(s) | 21, 88 |
| BseYI | CCCAGC | 1 cut(s) | 731 |
| BshFI | GGCC | 2 cut(s) | 186, 1201 |
| BshTI | ACCGGT | 1 cut(s) | 851 |
| BsiHKAI | GWGCWC | 4 cut(s) | 54, 378, 943, 1239 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1232 |
| BsiSI | CCGG | 3 cut(s) | 152, 278, 852 |
| BslFI | GGGAC | 2 cut(s) | 748, 1285 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BsmAI | GTCTC | 1 cut(s) | 350 |
| BsmFI | GGGAC | 2 cut(s) | 748, 1285 |
| BsmI | GAATGC | 1 cut(s) | 659 |
| BsnI | GGCC | 2 cut(s) | 186, 1201 |
| BsoBI | CYCGRG | 1 cut(s) | 1232 |
| Bsp1286I | GDGCHC | 5 cut(s) | 54, 378, 587, 943, 1239 |
| Bsp143I | GATC | 2 cut(s) | 739, 1280 |
| Bsp19I | CCATGG | 1 cut(s) | 1134 |
| BspACI | CCGC | 2 cut(s) | 1225, 1254 |
| BspANI | GGCC | 2 cut(s) | 186, 1201 |
| BspCNI | CTCAG | 1 cut(s) | 592 |
| BspQI | GCTCTTC | 1 cut(s) | 288 |
| BsrDI | GCAATG | 1 cut(s) | 1156 |
| BsrFI | RCCGGY | 2 cut(s) | 277, 851 |
| BsrI | ACTGG | 5 cut(s) | 436, 778, 915, 963, 1048 |
| BssAI | RCCGGY | 2 cut(s) | 277, 851 |
| BssECI | CCNNGG | 3 cut(s) | 294, 978, 1134 |
| BssMI | GATC | 2 cut(s) | 739, 1280 |
| BssT1I | CCWWGG | 2 cut(s) | 978, 1134 |
| Bst2UI | CCWGG | 3 cut(s) | 98, 317, 674 |
| Bst4CI | ACNGT | 3 cut(s) | 1021, 1131, 1290 |
| Bst6I | CTCTTC | 3 cut(s) | 30, 288, 1006 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 487, 965 |
| BstBAI | YACGTR | 1 cut(s) | 530 |
| BstC8I | GCNNGC | 2 cut(s) | 279, 1229 |
| BstDEI | CTNAG | 3 cut(s) | 13, 180, 579 |
| BstDSI | CCRYGG | 1 cut(s) | 1134 |
| BstF5I | GGATG | 7 cut(s) | 574, 706, 742, 907, 1144, 1174, 1202 |
| BstKTI | GATC | 2 cut(s) | 742, 1283 |
| BstMAI | GTCTC | 1 cut(s) | 350 |
| BstMBI | GATC | 2 cut(s) | 739, 1280 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 107, 169, 395, 487, 656, 965, 1178 |
| BstNI | CCWGG | 3 cut(s) | 98, 317, 674 |
| BstNSI | RCATGY | 1 cut(s) | 862 |
| BstSCI | CCNGG | 4 cut(s) | 96, 150, 315, 672 |
| BstSFI | CTRYAG | 1 cut(s) | 43 |
| BstSLI | GKGCMC | 1 cut(s) | 943 |
| BstSNI | TACGTA | 1 cut(s) | 530 |
| BstV1I | GCAGC | 2 cut(s) | 21, 88 |
| BsuI | GTATCC | 1 cut(s) | 670 |
| BsuRI | GGCC | 2 cut(s) | 186, 1201 |
| BtgI | CCRYGG | 1 cut(s) | 1134 |
| BtrI | CACGTC | 1 cut(s) | 447 |
| BtsCI | GGATG | 7 cut(s) | 574, 706, 742, 907, 1144, 1174, 1202 |
| BtsI | GCAGTG | 1 cut(s) | 198 |
| BtsIMutI | CAGTG | 6 cut(s) | 134, 198, 248, 785, 970, 1041 |
| Cac8I | GCNNGC | 2 cut(s) | 279, 1229 |
| Cfr10I | RCCGGY | 2 cut(s) | 277, 851 |
| Cfr13I | GGNCC | 2 cut(s) | 184, 509 |
| Csp6I | GTAC | 4 cut(s) | 246, 531, 923, 1127 |
| CspAI | ACCGGT | 1 cut(s) | 851 |
| CviAII | CATG | 4 cut(s) | 353, 859, 944, 1135 |
| CviQI | GTAC | 4 cut(s) | 246, 531, 923, 1127 |
| DdeI | CTNAG | 3 cut(s) | 13, 180, 579 |
| DpnI | GATC | 2 cut(s) | 741, 1282 |
| DpnII | GATC | 2 cut(s) | 739, 1280 |
| DraIII | CACNNNGTG | 1 cut(s) | 688 |
| EaeI | YGGCCR | 1 cut(s) | 1199 |
| Eam1104I | CTCTTC | 3 cut(s) | 30, 288, 1006 |
| EarI | CTCTTC | 3 cut(s) | 30, 288, 1006 |
| Ecl136II | GAGCTC | 1 cut(s) | 52 |
| Eco105I | TACGTA | 1 cut(s) | 530 |
| Eco130I | CCWWGG | 2 cut(s) | 978, 1134 |
| Eco24I | GRGCYC | 2 cut(s) | 54, 587 |
| Eco32I | GATATC | 1 cut(s) | 766 |
| Eco47I | GGWCC | 1 cut(s) | 509 |
| Eco53kI | GAGCTC | 1 cut(s) | 52 |
| Eco57I | CTGAAG | 2 cut(s) | 102, 1269 |
| Eco88I | CYCGRG | 1 cut(s) | 1232 |
| EcoICRI | GAGCTC | 1 cut(s) | 52 |
| EcoO109I | RGGNCCY | 1 cut(s) | 184 |
| EcoRII | CCWGG | 3 cut(s) | 96, 315, 672 |
| EcoRV | GATATC | 1 cut(s) | 766 |
| EcoT14I | CCWWGG | 2 cut(s) | 978, 1134 |
| EcoT38I | GRGCYC | 2 cut(s) | 54, 587 |
| ErhI | CCWWGG | 2 cut(s) | 978, 1134 |
| FaeI | CATG | 4 cut(s) | 356, 862, 947, 1138 |
| FaqI | GGGAC | 2 cut(s) | 748, 1285 |
| FatI | CATG | 4 cut(s) | 352, 858, 943, 1134 |
| FbaI | TGATCA | 1 cut(s) | 739 |
| Fnu4HI | GCNGC | 3 cut(s) | 10, 102, 1254 |
| FokI | GGATG | 7 cut(s) | 561, 693, 729, 914, 1151, 1181, 1189 |
| FriOI | GRGCYC | 2 cut(s) | 54, 587 |
| Fsp4HI | GCNGC | 3 cut(s) | 10, 102, 1254 |
| FspBI | CTAG | 1 cut(s) | 1067 |
| GluI | GCNGC | 3 cut(s) | 10, 102, 1254 |
| GsaI | CCCAGC | 1 cut(s) | 735 |
| GsuI | CTGGAG | 1 cut(s) | 621 |
| HaeIII | GGCC | 2 cut(s) | 186, 1201 |
| HapII | CCGG | 3 cut(s) | 152, 278, 852 |
| Hin1II | CATG | 4 cut(s) | 356, 862, 947, 1138 |
| HindIII | AAGCTT | 2 cut(s) | 161, 1025 |
| HinfI | GANTC | 2 cut(s) | 22, 1013 |
| HpaII | CCGG | 3 cut(s) | 152, 278, 852 |
| HphI | GGTGA | 3 cut(s) | 86, 220, 1233 |
| Hpy166II | GTNNAC | 3 cut(s) | 248, 923, 941 |
| Hpy188I | TCNGA | 5 cut(s) | 373, 442, 582, 665, 1176 |
| Hpy188III | TCNNGA | 7 cut(s) | 29, 261, 410, 494, 600, 1005, 1294 |
| Hpy8I | GTNNAC | 3 cut(s) | 248, 923, 941 |
| HpyAV | CCTTC | 4 cut(s) | 720, 784, 1291, 1295 |
| HpyCH4III | ACNGT | 3 cut(s) | 1021, 1131, 1290 |
| HpyCH4IV | ACGT | 3 cut(s) | 446, 529, 925 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 191, 398, 650, 794, 941, 968 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 107, 169, 395, 487, 656, 965, 1178 |
| HpyF3I | CTNAG | 3 cut(s) | 13, 180, 579 |
| HpySE526I | ACGT | 3 cut(s) | 446, 529, 925 |
| Hsp92II | CATG | 4 cut(s) | 356, 862, 947, 1138 |
| KroI | GCCGGC | 1 cut(s) | 277 |
| KroNI | GCCGGC | 1 cut(s) | 279 |
| Ksp22I | TGATCA | 1 cut(s) | 739 |
| Kzo9I | GATC | 2 cut(s) | 739, 1280 |
| LguI | GCTCTTC | 1 cut(s) | 288 |
| LmnI | GCTCC | 3 cut(s) | 602, 821, 1070 |
| Lsp1109I | GCAGC | 2 cut(s) | 21, 88 |
| LweI | GCATC | 3 cut(s) | 22, 477, 1159 |
| MaeI | CTAG | 1 cut(s) | 1067 |
| MaeII | ACGT | 3 cut(s) | 446, 529, 925 |
| MaeIII | GTNAC | 4 cut(s) | 80, 782, 865, 907 |
| MalI | GATC | 2 cut(s) | 741, 1282 |
| MboI | GATC | 2 cut(s) | 739, 1280 |
| MboII | GAAGA | 5 cut(s) | 17, 83, 216, 275, 993 |
| MhlI | GDGCHC | 5 cut(s) | 54, 378, 587, 943, 1239 |
| MlsI | TGGCCA | 1 cut(s) | 1201 |
| MluCI | AATT | 7 cut(s) | 55, 747, 807, 970, 1049, 1085, 1121 |
| MluNI | TGGCCA | 1 cut(s) | 1201 |
| MlyI | GAGTC | 1 cut(s) | 16 |
| MnlI | CCTC | 7 cut(s) | 199, 304, 457, 490, 588, 949, 1111 |
| Mox20I | TGGCCA | 1 cut(s) | 1201 |
| MroNI | GCCGGC | 1 cut(s) | 277 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1012 |
| MscI | TGGCCA | 1 cut(s) | 1201 |
| MseI | TTAA | 5 cut(s) | 477, 816, 1056, 1088, 1107 |
| MslI | CAYNNNNRTG | 2 cut(s) | 759, 1215 |
| Msp20I | TGGCCA | 1 cut(s) | 1201 |
| MspA1I | CMGCKG | 2 cut(s) | 172, 1227 |
| MspI | CCGG | 3 cut(s) | 152, 278, 852 |
| MspR9I | CCNGG | 4 cut(s) | 98, 152, 317, 674 |
| Mva1269I | GAATGC | 1 cut(s) | 659 |
| MvaI | CCWGG | 3 cut(s) | 98, 317, 674 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 107, 169, 395, 487, 656, 965, 1178 |
| NaeI | GCCGGC | 1 cut(s) | 279 |
| NciI | CCSGG | 1 cut(s) | 152 |
| NcoI | CCATGG | 1 cut(s) | 1134 |
| NdeII | GATC | 2 cut(s) | 739, 1280 |
| NgoMIV | GCCGGC | 1 cut(s) | 277 |
| NlaIII | CATG | 4 cut(s) | 356, 862, 947, 1138 |
| NmuCI | GTSAC | 1 cut(s) | 80 |
| NspI | RCATGY | 1 cut(s) | 862 |
| PaeR7I | CTCGAG | 1 cut(s) | 1232 |
| PciSI | GCTCTTC | 1 cut(s) | 288 |
| PctI | GAATGC | 1 cut(s) | 659 |
| PdiI | GCCGGC | 1 cut(s) | 279 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1012 |
| PfeI | GAWTC | 1 cut(s) | 1013 |
| PfoI | TCCNGGA | 2 cut(s) | 315, 672 |
| PinAI | ACCGGT | 1 cut(s) | 851 |
| PkrI | GCNGC | 3 cut(s) | 11, 103, 1255 |
| PleI | GAGTC | 1 cut(s) | 16 |
| PpsI | GAGTC | 1 cut(s) | 16 |
| Ppu21I | YACGTR | 1 cut(s) | 530 |
| Psp124BI | GAGCTC | 1 cut(s) | 54 |
| Psp6I | CCWGG | 3 cut(s) | 96, 315, 672 |
| PspFI | CCCAGC | 1 cut(s) | 731 |
| PspGI | CCWGG | 3 cut(s) | 96, 315, 672 |
| PspPI | GGNCC | 2 cut(s) | 184, 509 |
| PspXI | VCTCGAGB | 1 cut(s) | 1232 |
| PvuII | CAGCTG | 1 cut(s) | 172 |
| RsaI | GTAC | 4 cut(s) | 247, 532, 924, 1128 |
| RsaNI | GTAC | 4 cut(s) | 246, 531, 923, 1127 |
| RseI | CAYNNNNRTG | 2 cut(s) | 759, 1215 |
| SacI | GAGCTC | 1 cut(s) | 54 |
| SapI | GCTCTTC | 1 cut(s) | 288 |
| SaqAI | TTAA | 5 cut(s) | 477, 816, 1056, 1088, 1107 |
| SatI | GCNGC | 3 cut(s) | 10, 102, 1254 |
| Sau3AI | GATC | 2 cut(s) | 739, 1280 |
| Sau96I | GGNCC | 2 cut(s) | 184, 509 |
| SchI | GAGTC | 1 cut(s) | 16 |
| ScrFI | CCNGG | 4 cut(s) | 98, 152, 317, 674 |
| SduI | GDGCHC | 5 cut(s) | 54, 378, 587, 943, 1239 |
| SfaNI | GCATC | 3 cut(s) | 22, 477, 1159 |
| SfcI | CTRYAG | 1 cut(s) | 43 |
| Sfr274I | CTCGAG | 1 cut(s) | 1232 |
| SinI | GGWCC | 1 cut(s) | 509 |
| SlaI | CTCGAG | 1 cut(s) | 1232 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 759, 1215 |
| SmlI | CTYRAG | 1 cut(s) | 1232 |
| SmoI | CTYRAG | 1 cut(s) | 1232 |
| SnaBI | TACGTA | 1 cut(s) | 530 |
| Sse9I | AATT | 7 cut(s) | 55, 747, 807, 970, 1049, 1085, 1121 |
| SsiI | CCGC | 2 cut(s) | 1225, 1254 |
| SspI | AATATT | 1 cut(s) | 385 |
| SspMI | CTAG | 1 cut(s) | 1067 |
| SstI | GAGCTC | 1 cut(s) | 54 |
| StyD4I | CCNGG | 4 cut(s) | 96, 150, 315, 672 |
| StyI | CCWWGG | 2 cut(s) | 978, 1134 |
| TaaI | ACNGT | 3 cut(s) | 1021, 1131, 1290 |
| TaiI | ACGT | 3 cut(s) | 449, 532, 928 |
| TaqI | TCGA | 2 cut(s) | 144, 1233 |
| TasI | AATT | 7 cut(s) | 55, 747, 807, 970, 1049, 1085, 1121 |
| TatI | WGTACW | 1 cut(s) | 1126 |
| TauI | GCSGC | 1 cut(s) | 1256 |
| TfiI | GAWTC | 1 cut(s) | 1013 |
| Tru1I | TTAA | 5 cut(s) | 477, 816, 1056, 1088, 1107 |
| Tru9I | TTAA | 5 cut(s) | 477, 816, 1056, 1088, 1107 |
| TscAI | CASTG | 6 cut(s) | 141, 198, 255, 785, 970, 1048 |
| TseFI | GTSAC | 1 cut(s) | 80 |
| TseI | GCWGC | 2 cut(s) | 9, 101 |
| Tsp45I | GTSAC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 3 cut(s) | 275, 695, 1155 |
| TspGWI | ACGGA | 2 cut(s) | 68, 1130 |
| TspRI | CASTG | 6 cut(s) | 141, 198, 255, 785, 970, 1048 |
| VneI | GTGCAC | 1 cut(s) | 939 |
| VpaK11BI | GGWCC | 1 cut(s) | 509 |
| XapI | RAATTY | 2 cut(s) | 970, 1121 |
| XceI | RCATGY | 1 cut(s) | 862 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 562 |
| XhoI | CTCGAG | 1 cut(s) | 1232 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1012 |
| XspI | CTAG | 1 cut(s) | 1067 |