Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004638

Physical Location & Seq

Genomic Coordinates Reverse (-)

22009478 .. 22013756

Gene Structure 4279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGAGAAGAGCAGCTTGGAGCAAATTCTGCAAGATGCCAAGCTCCACAGGCAGCTCAATTCCCTCATCGTCGCTCATCTTCGTGACAGCAATCTTTATCAGGCAGCAAGTGCCGTTGCTTCCGCAACAATGACATCATTGAATGTCGAAGCCCCGCGTAATAGGCTTCTTGACCTGGTTGCCAAGGGACTTGCAGTGGAGCAAGATGAGATGTCGAGAGGGATTTCTTCATCTGCATATGATTTGGGCACATCAGTAGCTTCTGGATATGGTGGAATCCCAGCATCTCGCGCTGTTGCTGTTGATTTTGGTGCTGTGCAGGAAACAAAAGGCTTGTCGAAGAGTTTTCCAAAGCATGAGACACGCCATCTTTCAGAGCACAAGAATATTGCCAGATGTGCAAGGTTTAGTCCTGACGGGAAGTTTGTCGCTACTGGAAGTTCTGACACGTCAATAAAGCTTTTTGAGGTTTCAAAAATTAAGCAAATGATGCTTCCAGAGGCTCGAGATGGTCCTGTGAGACCTGTCATACGCACATTCTATGATCACTTACAACCTATAAATGACTTGGATTTCCATCCTCAGAACACTGTTCTTATATCTGGGTCAAAAGATCAGACCATAAAGTTCTTTGATTTTTCCAAGATGACCGCAAAGAGAGCATTCCGAGTTATCCAGGATACACACAACGTGCGTTCAGTGTCTTTTCATCCTTCTGGAGATTTTGTTTTAGCTGGGACTGATCATCCAATTCCACACTTGTATGATATCAATACCTTCCAGTGTTACCTATCAGCAAATGCCCCAGAAATCAATGATAATGGAGCAATAAATCAGGTCAGGTATACAGCTACAGGTGGCATGTATGTTACAGCTTCTAAAGACGGTGTTCTTCGTTTATGGGATGGTGTAACTGCCAAGTGTGTACGCTCCATACCAGCACATGTCACGGCAGAGGCAACCAGTGCAAACTTTACTAAGGATCAAAGGTTTGTTCTCTCTTCTGGAAAGGATTCTACCGTGAAACTTTGGGACATTGGCACTGGGAAACTGGTTAAGCAATATCTAGGAGCTACACATACTAAATTGCGGTGTCAGGCTGTTTTTAATGATACTGAAGAATTTGTACTGTCCATCGATGAACCGACCAATGAGATTGTTATCTGGGATGCTATGACGGCGGACAAAGTAGCGAAGTGGCCTTCCAATCATATTGGTGCTTTCCGTTGGCTTGCACACTCACCAACGGAGGCCGCATTTGTTACCTGTGGGACTGACAGATCAATCCGGTTCTGGAAGGAAAGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Mito_carr WD40

Protein Analysis

437

Amino Acids

48.1

Weight (kDa)

8.17

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60940 AT5G60940
fragaria_vesca	FvH4_5g13570 FvH4_5g13570 FvH4_5g13570 FvH4_5g13570
malus_domestica	MD06G1203600.v1.1
prunus_persica	Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1
pyrus_communis	pycom06g18170
rosa_chinensis	RchiOBHm_Chr7g0183371
rosa_laevigata	RLG00000005052
rosa_multiflora	Rmu_sc0000951.1_g000013 Rmu_sc0034749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270500
rosa_rugosa	Rorug06G0457100 Rorug06G0457200 Rorug06G0457300 Rorug06G0457400 Rorug06G0457500
rosa_samantha	Rh7AG058600 Rh7BG058600 Rh7CG060200 Rh7DG058300
rosa_wichuraiana	Rw7G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	845
AccII	CGCG	2 cut(s)	157, 291
AciI	CCGC	6 cut(s)	123, 155, 651, 1090, 1181, 1254
AclWI	GGATC	1 cut(s)	990
AcsI	RAATTY	2 cut(s)	24, 1121
AcuI	CTGAAG	1 cut(s)	1137
AdeI	CACNNNGTG	1 cut(s)	691
AfaI	GTAC	2 cut(s)	927, 1128
AflIII	ACRYGT	2 cut(s)	447, 943
AgsI	TTSAA	2 cut(s)	142, 474
AjiI	CACGTC	1 cut(s)	450
AjnI	CCWGG	2 cut(s)	174, 675
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	9 cut(s)	15, 43, 55, 260, 460, 734, 851, 875, 1073
AluI	AGCT	9 cut(s)	15, 43, 55, 260, 460, 734, 851, 875, 1073
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	353, 514
AlwI	GGATC	1 cut(s)	990
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	2 cut(s)	1199, 1251
ApeKI	GCWGC	3 cut(s)	12, 52, 104
ApoI	RAATTY	2 cut(s)	24, 1121
ArsI	GACNNNNNNTTYG	4 cut(s)	320, 352, 407, 439
Asp700I	GAANNNNTTC	1 cut(s)	1012
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	1233
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	251
BarI	GAAGNNNNNNTAC	2 cut(s)	1110, 1142
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	24, 64, 116
BccI	CCATC	5 cut(s)	375, 503, 585, 899, 1142
BceAI	ACGGC	3 cut(s)	98, 966, 1194
BciT130I	CCWGG	2 cut(s)	176, 677
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	2 cut(s)	544, 742
BcoDI	GTCTC	2 cut(s)	353, 514
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	1 cut(s)	852
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	4 cut(s)	13, 53, 105, 1254
BlsI	GCNGC	4 cut(s)	14, 54, 106, 1255
Bme1390I	CCNGG	2 cut(s)	176, 677
Bme18I	GGWCC	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	504
BmgBI	CACGTC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	176, 677
BmrI	ACTGGG	1 cut(s)	1053
BmsI	GCATC	4 cut(s)	25, 293, 480, 1159
BmuI	ACTGGG	1 cut(s)	1053
BpmI	CTGGAG	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	1137
BsaBI	GATNNNNATC	2 cut(s)	576, 1160
BsaI	GGTCTC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	1287
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bse1I	ACTGG	5 cut(s)	439, 781, 963, 1048, 1056
Bse8I	GATNNNNATC	2 cut(s)	576, 1160
BseBI	CCWGG	2 cut(s)	176, 677
BseCI	ATCGAT	1 cut(s)	1137
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	5 cut(s)	577, 709, 745, 910, 1174
BseJI	GATNNNNATC	2 cut(s)	576, 1160
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	5 cut(s)	439, 781, 963, 1048, 1056
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	24, 64, 116
BseYI	CCCAGC	2 cut(s)	280, 734
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	2 cut(s)	157, 291
BshFI	GGCC	2 cut(s)	1201, 1253
BshVI	ATCGAT	1 cut(s)	1137
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	1288
BslFI	GGGAC	4 cut(s)	201, 751, 1046, 1285
BsmAI	GTCTC	2 cut(s)	353, 514
BsmFI	GGGAC	4 cut(s)	201, 751, 1046, 1285
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	1201, 1253
Bso31I	GGTCTC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	251, 381
Bsp143I	GATC	5 cut(s)	544, 613, 742, 982, 1280
BspACI	CCGC	6 cut(s)	123, 155, 651, 1090, 1181, 1254
BspANI	GGCC	2 cut(s)	1201, 1253
BspCNI	CTCAG	1 cut(s)	595
BspDI	ATCGAT	1 cut(s)	1137
BspFNI	CGCG	2 cut(s)	157, 291
BspPI	GGATC	1 cut(s)	990
BspQI	GCTCTTC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	514
BsrI	ACTGG	5 cut(s)	439, 781, 963, 1048, 1056
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	5 cut(s)	544, 613, 742, 982, 1280
BssNAI	GTATAC	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	846
Bst2UI	CCWGG	2 cut(s)	176, 677
Bst4CI	ACNGT	4 cut(s)	592, 887, 1021, 1131
Bst6I	CTCTTC	3 cut(s)	2, 335, 1006
BstAPI	GCANNNNNTGC	4 cut(s)	28, 110, 490, 965
BstC8I	GCNNGC	1 cut(s)	1233
BstDEI	CTNAG	2 cut(s)	582, 978
BstF5I	GGATG	5 cut(s)	577, 709, 745, 910, 1174
BstFNI	CGCG	2 cut(s)	157, 291
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	5 cut(s)	547, 616, 745, 985, 1283
BstMAI	GTCTC	2 cut(s)	353, 514
BstMBI	GATC	5 cut(s)	544, 613, 742, 982, 1280
BstNI	CCWGG	2 cut(s)	176, 677
BstNSI	RCATGY	2 cut(s)	865, 947
BstSCI	CCNGG	2 cut(s)	174, 675
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	1 cut(s)	251
BstUI	CGCG	2 cut(s)	157, 291
BstV1I	GCAGC	3 cut(s)	24, 64, 116
BstZ17I	GTATAC	1 cut(s)	846
Bsu15I	ATCGAT	1 cut(s)	1137
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	1201, 1253
BsuTUI	ATCGAT	1 cut(s)	1137
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	5 cut(s)	577, 709, 745, 910, 1174
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	6 cut(s)	201, 588, 705, 788, 970, 1041
Cac8I	GCNNGC	1 cut(s)	1233
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	512
ClaI	ATCGAT	1 cut(s)	1137
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	926, 1127
CviAII	CATG	3 cut(s)	356, 862, 944
CviQI	GTAC	2 cut(s)	926, 1127
DdeI	CTNAG	2 cut(s)	582, 978
DpnI	GATC	5 cut(s)	546, 615, 744, 984, 1282
DpnII	GATC	5 cut(s)	544, 613, 742, 982, 1280
DraIII	CACNNNGTG	1 cut(s)	691
Eam1104I	CTCTTC	3 cut(s)	2, 335, 1006
EarI	CTCTTC	3 cut(s)	2, 335, 1006
EciI	GGCGGA	1 cut(s)	1196
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	504
EcoRII	CCWGG	2 cut(s)	174, 675
EcoRV	GATATC	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	359, 865, 947
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	4 cut(s)	201, 751, 1046, 1285
FatI	CATG	3 cut(s)	355, 861, 943
FauI	CCCGC	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	2 cut(s)	544, 742
FblI	GTMKAC	1 cut(s)	845
Fnu4HI	GCNGC	4 cut(s)	13, 53, 105, 1254
FokI	GGATG	5 cut(s)	564, 696, 732, 917, 1181
Fsp4HI	GCNGC	4 cut(s)	13, 53, 105, 1254
FspBI	CTAG	1 cut(s)	1067
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	4 cut(s)	13, 53, 105, 1254
GsaI	CCCAGC	2 cut(s)	284, 738
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	1201, 1253
HapII	CCGG	1 cut(s)	1288
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	3 cut(s)	359, 865, 947
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	276, 1013
HpaII	CCGG	1 cut(s)	1288
HphI	GGTGA	1 cut(s)	1233
Hpy166II	GTNNAC	2 cut(s)	846, 926
Hpy188I	TCNGA	5 cut(s)	376, 445, 585, 618, 668
Hpy8I	GTNNAC	2 cut(s)	846, 926
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	723, 787, 1212, 1291
HpyCH4III	ACNGT	4 cut(s)	592, 887, 1021, 1131
HpyCH4IV	ACGT	2 cut(s)	449, 690
HpyCH4V	TGCA	7 cut(s)	31, 194, 236, 319, 401, 968, 1235
HpyF3I	CTNAG	2 cut(s)	582, 978
HpySE526I	ACGT	2 cut(s)	449, 690
Hsp92II	CATG	3 cut(s)	359, 865, 947
HspAI	GCGC	1 cut(s)	291
Ksp22I	TGATCA	2 cut(s)	544, 742
Kzo9I	GATC	5 cut(s)	544, 613, 742, 982, 1280
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	6 cut(s)	19, 48, 199, 824, 935, 1070
Lsp1109I	GCAGC	3 cut(s)	24, 64, 116
LweI	GCATC	4 cut(s)	25, 293, 480, 1159
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	2 cut(s)	449, 690
MaeIII	GTNAC	6 cut(s)	83, 785, 868, 910, 946, 1261
MalI	GATC	5 cut(s)	546, 615, 744, 984, 1282
MboI	GATC	5 cut(s)	544, 613, 742, 982, 1280
MboII	GAAGA	7 cut(s)	19, 71, 219, 352, 884, 993, 1130
MhlI	GDGCHC	2 cut(s)	251, 381
MluCI	AATT	6 cut(s)	24, 58, 477, 750, 1085, 1121
MnlI	CCTC	7 cut(s)	74, 212, 460, 493, 591, 949, 1243
MroXI	GAANNNNTTC	1 cut(s)	1012
MseI	TTAA	3 cut(s)	480, 1056, 1107
MslI	CAYNNNNRTG	3 cut(s)	81, 762, 1215
MspI	CCGG	1 cut(s)	1288
MspR9I	CCNGG	2 cut(s)	176, 677
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	2 cut(s)	176, 677
MvnI	CGCG	2 cut(s)	157, 291
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	5 cut(s)	544, 613, 742, 982, 1280
NlaIII	CATG	3 cut(s)	359, 865, 947
NmuCI	GTSAC	2 cut(s)	83, 946
NspI	RCATGY	2 cut(s)	865, 947
PaeR7I	CTCGAG	1 cut(s)	504
PciI	ACATGT	1 cut(s)	943
PciSI	GCTCTTC	1 cut(s)	2
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	1012
PfeI	GAWTC	2 cut(s)	276, 1013
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	4 cut(s)	14, 54, 106, 1255
PscI	ACATGT	1 cut(s)	943
Psp6I	CCWGG	2 cut(s)	174, 675
PspFI	CCCAGC	2 cut(s)	280, 734
PspGI	CCWGG	2 cut(s)	174, 675
PspPI	GGNCC	1 cut(s)	512
RsaI	GTAC	2 cut(s)	927, 1128
RsaNI	GTAC	2 cut(s)	926, 1127
RseI	CAYNNNNRTG	3 cut(s)	81, 762, 1215
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	3 cut(s)	480, 1056, 1107
SatI	GCNGC	4 cut(s)	13, 53, 105, 1254
Sau3AI	GATC	5 cut(s)	544, 613, 742, 982, 1280
Sau96I	GGNCC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	176, 677
SduI	GDGCHC	2 cut(s)	251, 381
SexAI	ACCWGGT	1 cut(s)	174
SfaNI	GCATC	4 cut(s)	25, 293, 480, 1159
SfcI	CTRYAG	1 cut(s)	852
Sfr274I	CTCGAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	512
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	3 cut(s)	81, 762, 1215
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	6 cut(s)	24, 58, 477, 750, 1085, 1121
SsiI	CCGC	6 cut(s)	123, 155, 651, 1090, 1181, 1254
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	1067
StyD4I	CCNGG	2 cut(s)	174, 675
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	4 cut(s)	592, 887, 1021, 1131
TaiI	ACGT	2 cut(s)	452, 693
TaqI	TCGA	5 cut(s)	147, 215, 338, 505, 1137
TasI	AATT	6 cut(s)	24, 58, 477, 750, 1085, 1121
TatI	WGTACW	1 cut(s)	1126
TauI	GCSGC	1 cut(s)	1256
TfiI	GAWTC	2 cut(s)	276, 1013
Tru1I	TTAA	3 cut(s)	480, 1056, 1107
Tru9I	TTAA	3 cut(s)	480, 1056, 1107
TscAI	CASTG	6 cut(s)	201, 595, 705, 788, 970, 1048
TseFI	GTSAC	2 cut(s)	83, 946
TseI	GCWGC	3 cut(s)	12, 52, 104
Tsp45I	GTSAC	2 cut(s)	83, 946
TspDTI	ATGAA	3 cut(s)	219, 698, 1155
TspGWI	ACGGA	2 cut(s)	1214, 1262
TspRI	CASTG	6 cut(s)	201, 595, 705, 788, 970, 1048
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	2 cut(s)	24, 1121
XceI	RCATGY	2 cut(s)	865, 947
XhoI	CTCGAG	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	845
XmnI	GAANNNNTTC	1 cut(s)	1012
XspI	CTAG	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.