Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034749.1

Orthogroup ID

OG0004638

Physical Location & Seq

Genomic Coordinates Reverse (-)

125 .. 3177

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034749.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgacatcactgaatgtcgaaatcccggctaataagcttgttcagctggttgctaagggccttgcagtggagaaagatgaggtgataaggggggtttcttctcttgctaatgatttgggtacactgataccatcgggatatggttcaatgccggctcttcatactgcctcggttgattttggtgctgtccaggaaacaaaaggctcgtcaaagagtttcccaaagcatgagacacgccatctttcagagcacaagaatattgccagatgtgcaaggtttagtcctgatgggaagtttgttgcgactggaagttcagacacgtcaataaagctatttgaggtggcaaaagttaagcaaatgatgcttccagaggcaagagatggtcctgtgcgacctgtcatacgtacattctatgaccacttacaacccataaatgatttggatttccatcctcagagccctattcttatatctggagcaaaagataacacaataaagttctttgattattccaaaatgactgcaaagagagcattcagagttatccaggatacacacaatgtgcgttcagtagcatttcatccttctggggagtttcttttagctgggactgatcatccaattccacacttatatgatatcaataccttccagtgttacctatctgcaaatgccccagaaattgatgttaatggagcaataaatcaggtcaggtattcagctaccggtggcatgtatgttacagcttctaaagatggtgctattcgcttatgggatggtgttactgccagttgtgtacgttccatagttggtgcacatggcacagcagaggcaaccagtgcaaattttaccaaggacgaaaggtttgttctctcttctggaaaggattctactgtgaagctttgggaagttggcactggaaaattggttaaacaatatctaggagctacacatacacaattaagatgtcaggctgtttttaataatacggaggaatttgtactgtccatggatgaaccaagcaatgagattgttatctgggatgctctgacagcagaagtagtagcaaggtggccatccaatcatattggtgctttccgctggctcgagcactcaccaactgaagccgcatttgtttcgtgtgggactgacagatcaatacggttctggaaggaaggcgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Mito_carr WD40

Protein Analysis

394

Amino Acids

43.24

Weight (kDa)

6.71

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60940 AT5G60940
fragaria_vesca	FvH4_5g13570 FvH4_5g13570 FvH4_5g13570 FvH4_5g13570
malus_domestica	MD06G1203600.v1.1
prunus_persica	Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1
pyrus_communis	pycom06g18170
rosa_chinensis	RchiOBHm_Chr7g0183371
rosa_laevigata	RLG00000005052
rosa_multiflora	Rmu_sc0000951.1_g000013 Rmu_sc0034749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270500
rosa_rugosa	Rorug06G0457100 Rorug06G0457200 Rorug06G0457300 Rorug06G0457400 Rorug06G0457500
rosa_samantha	Rh7AG058600 Rh7BG058600 Rh7CG060200 Rh7DG058300
rosa_wichuraiana	Rw7G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1099, 1128
AcoI	YGGCCR	1 cut(s)	1073
AcsI	RAATTY	2 cut(s)	844, 995
AcuI	CTGAAG	1 cut(s)	1143
AdeI	CACNNNGTG	1 cut(s)	562
AfaI	GTAC	4 cut(s)	121, 406, 798, 1002
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	318
AgeI	ACCGGT	1 cut(s)	725
AgsI	TTSAA	1 cut(s)	147
AjiI	CACGTC	1 cut(s)	321
AjnI	CCWGG	2 cut(s)	189, 546
AluBI	AGCT	8 cut(s)	37, 46, 331, 605, 722, 746, 901, 947
AluI	AGCT	8 cut(s)	37, 46, 331, 605, 722, 746, 901, 947
Alw21I	GWGCWC	3 cut(s)	252, 817, 1113
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	813
Ama87I	CYCGRG	1 cut(s)	1106
AoxI	GGCC	2 cut(s)	58, 1073
ApaLI	GTGCAC	1 cut(s)	813
ApoI	RAATTY	2 cut(s)	844, 995
ArsI	GACNNNNNNTTYG	4 cut(s)	191, 223, 848, 880
AsiGI	ACCGGT	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	886
AspS9I	GGNCC	2 cut(s)	58, 383
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	94, 1107
AvaI	CYCGRG	1 cut(s)	1106
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	817
BalI	TGGCCA	1 cut(s)	1075
BanII	GRGCYC	1 cut(s)	461
Bbv12I	GWGCWC	3 cut(s)	252, 817, 1113
BccI	CCATC	8 cut(s)	139, 246, 281, 374, 456, 749, 770, 1084
BcgI	CGANNNNNNTGC	2 cut(s)	1119, 1153
BciT130I	CCWGG	2 cut(s)	191, 548
BciVI	GTATCC	1 cut(s)	544
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	941
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	1 cut(s)	1128
BlsI	GCNGC	1 cut(s)	1129
Bme1390I	CCNGG	3 cut(s)	26, 191, 548
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	1106
BmgBI	CACGTC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	58, 383
BmrFI	CCNGG	3 cut(s)	26, 191, 548
BmsI	GCATC	2 cut(s)	351, 1033
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	404
BsaBI	GATNNNNATC	2 cut(s)	447, 1034
BsaJI	CCNNGG	3 cut(s)	168, 852, 1008
BsaWI	WCCGGW	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	2 cut(s)	151, 725
Bse1I	ACTGG	5 cut(s)	310, 652, 789, 837, 922
Bse3DI	GCAATG	1 cut(s)	1030
Bse8I	GATNNNNATC	2 cut(s)	447, 1034
BseBI	CCWGG	2 cut(s)	191, 548
BseDI	CCNNGG	3 cut(s)	168, 852, 1008
BseGI	GGATG	7 cut(s)	448, 580, 616, 781, 1018, 1048, 1076
BseJI	GATNNNNATC	2 cut(s)	447, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	1030
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	5 cut(s)	310, 652, 789, 837, 922
BseSI	GKGCMC	1 cut(s)	817
BseYI	CCCAGC	1 cut(s)	605
BshFI	GGCC	2 cut(s)	60, 1075
BshTI	ACCGGT	1 cut(s)	725
BsiHKAI	GWGCWC	3 cut(s)	252, 817, 1113
BsiHKCI	CYCGRG	1 cut(s)	1106
BsiSI	CCGG	3 cut(s)	26, 152, 726
BslFI	GGGAC	2 cut(s)	622, 1159
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	622, 1159
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	60, 1075
BsoBI	CYCGRG	1 cut(s)	1106
Bsp1286I	GDGCHC	4 cut(s)	252, 461, 817, 1113
Bsp143I	GATC	2 cut(s)	613, 1154
Bsp19I	CCATGG	1 cut(s)	1008
BspACI	CCGC	2 cut(s)	1099, 1128
BspANI	GGCC	2 cut(s)	60, 1075
BspCNI	CTCAG	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	1030
BsrFI	RCCGGY	2 cut(s)	151, 725
BsrI	ACTGG	5 cut(s)	310, 652, 789, 837, 922
BssAI	RCCGGY	2 cut(s)	151, 725
BssECI	CCNNGG	3 cut(s)	168, 852, 1008
BssMI	GATC	2 cut(s)	613, 1154
BssT1I	CCWWGG	2 cut(s)	852, 1008
Bst2UI	CCWGG	2 cut(s)	191, 548
Bst4CI	ACNGT	3 cut(s)	895, 1005, 1164
Bst6I	CTCTTC	2 cut(s)	162, 880
BstAPI	GCANNNNNTGC	2 cut(s)	361, 839
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	153, 1103
BstDEI	CTNAG	2 cut(s)	54, 453
BstDSI	CCRYGG	1 cut(s)	1008
BstF5I	GGATG	7 cut(s)	448, 580, 616, 781, 1018, 1048, 1076
BstKTI	GATC	2 cut(s)	616, 1157
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	613, 1154
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 269, 361, 530, 839, 1052
BstNI	CCWGG	2 cut(s)	191, 548
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	3 cut(s)	24, 189, 546
BstSLI	GKGCMC	1 cut(s)	817
BstSNI	TACGTA	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	60, 1075
BtgI	CCRYGG	1 cut(s)	1008
BtrI	CACGTC	1 cut(s)	321
BtsCI	GGATG	7 cut(s)	448, 580, 616, 781, 1018, 1048, 1076
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	6 cut(s)	8, 72, 122, 659, 844, 915
Cac8I	GCNNGC	2 cut(s)	153, 1103
Cfr10I	RCCGGY	2 cut(s)	151, 725
Cfr13I	GGNCC	2 cut(s)	58, 383
Csp6I	GTAC	4 cut(s)	120, 405, 797, 1001
CspAI	ACCGGT	1 cut(s)	725
CviAII	CATG	4 cut(s)	227, 733, 818, 1009
CviQI	GTAC	4 cut(s)	120, 405, 797, 1001
DdeI	CTNAG	2 cut(s)	54, 453
DpnI	GATC	2 cut(s)	615, 1156
DpnII	GATC	2 cut(s)	613, 1154
DraIII	CACNNNGTG	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	1073
Eam1104I	CTCTTC	2 cut(s)	162, 880
EarI	CTCTTC	2 cut(s)	162, 880
Eco105I	TACGTA	1 cut(s)	404
Eco130I	CCWWGG	2 cut(s)	852, 1008
Eco24I	GRGCYC	1 cut(s)	461
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	1143
Eco88I	CYCGRG	1 cut(s)	1106
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	189, 546
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	852, 1008
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	2 cut(s)	852, 1008
FaeI	CATG	4 cut(s)	230, 736, 821, 1012
FaqI	GGGAC	2 cut(s)	622, 1159
FatI	CATG	4 cut(s)	226, 732, 817, 1008
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	1128
FokI	GGATG	7 cut(s)	435, 567, 603, 788, 1025, 1055, 1063
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	1128
FspBI	CTAG	1 cut(s)	941
GluI	GCNGC	1 cut(s)	1128
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	60, 1075
HapII	CCGG	3 cut(s)	26, 152, 726
Hin1II	CATG	4 cut(s)	230, 736, 821, 1012
HindIII	AAGCTT	2 cut(s)	35, 899
HinfI	GANTC	1 cut(s)	887
HpaII	CCGG	3 cut(s)	26, 152, 726
HphI	GGTGA	2 cut(s)	94, 1107
Hpy166II	GTNNAC	3 cut(s)	122, 797, 815
Hpy188I	TCNGA	5 cut(s)	247, 316, 456, 539, 1050
Hpy188III	TCNNGA	6 cut(s)	135, 284, 368, 474, 879, 1168
Hpy8I	GTNNAC	3 cut(s)	122, 797, 815
HpyAV	CCTTC	4 cut(s)	594, 658, 1165, 1169
HpyCH4III	ACNGT	3 cut(s)	895, 1005, 1164
HpyCH4IV	ACGT	3 cut(s)	320, 403, 799
HpyCH4V	TGCA	6 cut(s)	65, 272, 524, 668, 815, 842
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 269, 361, 530, 839, 1052
HpyF3I	CTNAG	2 cut(s)	54, 453
HpySE526I	ACGT	3 cut(s)	320, 403, 799
Hsp92II	CATG	4 cut(s)	230, 736, 821, 1012
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	613, 1154
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	3 cut(s)	476, 695, 944
LweI	GCATC	2 cut(s)	351, 1033
MaeI	CTAG	1 cut(s)	941
MaeII	ACGT	3 cut(s)	320, 403, 799
MaeIII	GTNAC	3 cut(s)	656, 739, 781
MalI	GATC	2 cut(s)	615, 1156
MboI	GATC	2 cut(s)	613, 1154
MboII	GAAGA	3 cut(s)	90, 149, 867
MhlI	GDGCHC	4 cut(s)	252, 461, 817, 1113
MlsI	TGGCCA	1 cut(s)	1075
MluCI	AATT	6 cut(s)	621, 681, 844, 923, 959, 995
MluNI	TGGCCA	1 cut(s)	1075
MnlI	CCTC	7 cut(s)	73, 178, 331, 364, 462, 823, 985
Mox20I	TGGCCA	1 cut(s)	1075
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	886
MscI	TGGCCA	1 cut(s)	1075
MseI	TTAA	5 cut(s)	351, 690, 930, 962, 981
MslI	CAYNNNNRTG	2 cut(s)	633, 1089
Msp20I	TGGCCA	1 cut(s)	1075
MspA1I	CMGCKG	2 cut(s)	46, 1101
MspI	CCGG	3 cut(s)	26, 152, 726
MspR9I	CCNGG	3 cut(s)	26, 191, 548
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	2 cut(s)	191, 548
MwoI	GCNNNNNNNGC	6 cut(s)	43, 269, 361, 530, 839, 1052
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	1008
NdeII	GATC	2 cut(s)	613, 1154
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	4 cut(s)	230, 736, 821, 1012
NspI	RCATGY	1 cut(s)	736
PaeR7I	CTCGAG	1 cut(s)	1106
PciSI	GCTCTTC	1 cut(s)	162
PctI	GAATGC	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	886
PfeI	GAWTC	1 cut(s)	887
PfoI	TCCNGGA	2 cut(s)	189, 546
PinAI	ACCGGT	1 cut(s)	725
PkrI	GCNGC	1 cut(s)	1129
Ppu21I	YACGTR	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	189, 546
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	189, 546
PspPI	GGNCC	2 cut(s)	58, 383
PspXI	VCTCGAGB	1 cut(s)	1106
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	4 cut(s)	121, 406, 798, 1002
RsaNI	GTAC	4 cut(s)	120, 405, 797, 1001
RseI	CAYNNNNRTG	2 cut(s)	633, 1089
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	5 cut(s)	351, 690, 930, 962, 981
SatI	GCNGC	1 cut(s)	1128
Sau3AI	GATC	2 cut(s)	613, 1154
Sau96I	GGNCC	2 cut(s)	58, 383
ScrFI	CCNGG	3 cut(s)	26, 191, 548
SduI	GDGCHC	4 cut(s)	252, 461, 817, 1113
SfaNI	GCATC	2 cut(s)	351, 1033
Sfr274I	CTCGAG	1 cut(s)	1106
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	1106
SmiMI	CAYNNNNRTG	2 cut(s)	633, 1089
SmlI	CTYRAG	1 cut(s)	1106
SmoI	CTYRAG	1 cut(s)	1106
SnaBI	TACGTA	1 cut(s)	404
Sse9I	AATT	6 cut(s)	621, 681, 844, 923, 959, 995
SsiI	CCGC	2 cut(s)	1099, 1128
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	941
StyD4I	CCNGG	3 cut(s)	24, 189, 546
StyI	CCWWGG	2 cut(s)	852, 1008
TaaI	ACNGT	3 cut(s)	895, 1005, 1164
TaiI	ACGT	3 cut(s)	323, 406, 802
TaqI	TCGA	2 cut(s)	18, 1107
TasI	AATT	6 cut(s)	621, 681, 844, 923, 959, 995
TatI	WGTACW	1 cut(s)	1000
TauI	GCSGC	1 cut(s)	1130
TfiI	GAWTC	1 cut(s)	887
Tru1I	TTAA	5 cut(s)	351, 690, 930, 962, 981
Tru9I	TTAA	5 cut(s)	351, 690, 930, 962, 981
TscAI	CASTG	6 cut(s)	15, 72, 129, 659, 844, 922
TspDTI	ATGAA	3 cut(s)	149, 569, 1029
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	6 cut(s)	15, 72, 129, 659, 844, 922
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	2 cut(s)	844, 995
XceI	RCATGY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	1106
XmnI	GAANNNNTTC	1 cut(s)	886
XspI	CTAG	1 cut(s)	941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.