Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004638

Physical Location & Seq

Genomic Coordinates Reverse (-)

16561811 .. 16567271

Gene Structure 5461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G207700.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGAGAACAGCAGCTTGGAGCAGGTTCTGCAAGATGCCAAGCTCCACAGACAAATCAATTCGCTCATCGTCGCTCATCTTCGCGACAACAATCTCTATCAGGCTGCTAGTGTCGTTGCTTCCGCAACAATGACATCATTGAATGATGAAGCCCCGCCTAATAAGCTCCTTGAACTGGTTGCCAAGGGCCTTGCAGTGGAGAAAGATGAGATGTTGAGAGGGGTTCCGTCATCTGCATTTGATTTGGGTACATCAATACCTTCTGGATATGGTTCAATCCCAGCTCCTCGCACTGCTGCTGTTGATTTTGGTGCAGTGCAGGAAACAAAAGGCTCATCAAAGAGCTTCCCAAAGCATGAGACACGCCATCTTTCAGAGCACAAGAATATTGCCAGATGTGCAAGGTTTAGTCCTGATGGGAAGTTTGTTGCTACTGGAAGTTCTGACACATCAATAAAGCTTTTTGAGGTTGCAAAAATTAAGCAAATGATGCTTCCAGATGCAAGAGATGCAAGAGATGGTCCTGTTAGACCTGTCATTCGCACATTCTATGACCACTTACAACCTATAAATGACTTGGATTTCCATCCTCAGAACACTGTTCTTATATCGGGGTCAAAAGATAACACCATAAACAAAACATGTCTTCATGCCCCTCTTATTCTGCCCTTTTTAGTTCTTTGCTGTTTTTTTTCCTCCTCACCTTCGAACATTACCAGCATTAGTTGTAAAACAAAACAGGAGTTCACTTCAAACTCTTATGTAAGTCATGTTACTACTTTCAGGTTCTTTGATTTTTCCAAGATGACTGCAAAGAGAGCATTCAGAGTCATCCAGGATACACACAATGTGCGTTCAGTATCTTTTCATCCTTCTGGAGATTTTCTTCTAGCTGGGACTGATCATCCAATTCCACACTTGTATGATATCAATACCTTCCAGTGCTACCTGTCTGCAAATGCCCCAGAAATCAATGATAACGGAGCCATAAATCAGGTCAGGTATTCTGCTACAGGTGGCATGTATGTTACAGCTTCTAAAGATGGTACCATTCGTTTATGGGATGGTGTAACTGCCAATTGCGTACGCTCAATAGCTGGTGCACATGGCACGGCGGAGGCAACCAGTGCAAACTTTACTAAGGATCAAAGGTTTGTTCTCTCTTCTGGAAAGGATTCTACTGTAAAGCTTTGGGAAGTCGGCACTGGAAAATTGGTTAAACAATATCTAGGAGCTACACATACTCAATTGCGGTGTCAGGCTGTTTTTAACGATACCGAAGAATTTGTACTCTCCATCGATGAACCGACCAATGAGATTGTTATATGGGATGCTCTGACAGCAGAGAAAGTAGCAAAATGGCCTTCCAATCATATTGGTGCTTTCCGTTGGCTTGAGCACTCACCAACAGAGGCAGCATATGTTACCTGTGGGACTGACAGATCAATCCGGTTCTGGAAGGAAAGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Mito_carr WD40

Protein Analysis

491

Amino Acids

54.01

Weight (kDa)

6.99

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60940 AT5G60940
fragaria_vesca	FvH4_5g13570 FvH4_5g13570 FvH4_5g13570 FvH4_5g13570
malus_domestica	MD06G1203600.v1.1
prunus_persica	Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1 Prupe.5G207700_v2.0.a1
pyrus_communis	pycom06g18170
rosa_chinensis	RchiOBHm_Chr7g0183371
rosa_laevigata	RLG00000005052
rosa_multiflora	Rmu_sc0000951.1_g000013 Rmu_sc0034749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270500
rosa_rugosa	Rorug06G0457100 Rorug06G0457200 Rorug06G0457300 Rorug06G0457400 Rorug06G0457500
rosa_samantha	Rh7AG058600 Rh7BG058600 Rh7CG060200 Rh7DG058300
rosa_wichuraiana	Rw7G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
Acc65I	GGTACC	1 cut(s)	1046
AccB1I	GGYRCC	1 cut(s)	1046
AccII	CGCG	1 cut(s)	84
AciI	CCGC	4 cut(s)	123, 155, 1115, 1252
AclWI	GGATC	1 cut(s)	1152
AcsI	RAATTY	1 cut(s)	1283
AdeI	CACNNNGTG	1 cut(s)	850
AfaI	GTAC	4 cut(s)	250, 1048, 1086, 1290
AfiI	CCNNNNNNNGG	2 cut(s)	175, 196
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	4 cut(s)	142, 173, 276, 753
AjnI	CCWGG	1 cut(s)	834
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
Alw21I	GWGCWC	3 cut(s)	381, 1105, 1401
Alw26I	GTCTC	1 cut(s)	353
Alw44I	GTGCAC	1 cut(s)	1101
AlwI	GGATC	1 cut(s)	1152
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	187, 1361
ApaLI	GTGCAC	1 cut(s)	1101
ApeKI	GCWGC	4 cut(s)	12, 104, 296, 1415
ApoI	RAATTY	1 cut(s)	1283
ArsI	GACNNNNNNTTYG	2 cut(s)	522, 554
Asp700I	GAANNNNTTC	1 cut(s)	1174
Asp718I	GGTACC	1 cut(s)	1046
AspS9I	GGNCC	2 cut(s)	187, 521
AsuHPI	GGTGA	2 cut(s)	693, 1395
AsuII	TTCGAA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	1105
BanI	GGYRCC	1 cut(s)	1046
BarI	GAAGNNNNNNTAC	2 cut(s)	1272, 1304
BbsI	GAAGAC	1 cut(s)	638
Bbv12I	GWGCWC	3 cut(s)	381, 1105, 1401
BbvI	GCAGC	4 cut(s)	24, 91, 283, 1427
BccI	CCATC	7 cut(s)	375, 410, 512, 594, 1037, 1058, 1304
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	1 cut(s)	836
BciVI	GTATCC	1 cut(s)	832
BclI	TGATCA	1 cut(s)	901
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	3 cut(s)	108, 890, 1229
BfmI	CTRYAG	1 cut(s)	1011
BfuAI	ACCTGC	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	4 cut(s)	13, 105, 297, 1416
BlsI	GCNGC	4 cut(s)	14, 106, 298, 1417
Bme1390I	CCNGG	1 cut(s)	836
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	187, 521
BmiI	GGNNCC	3 cut(s)	225, 985, 1048
BmrFI	CCNGG	1 cut(s)	836
BmsI	GCATC	5 cut(s)	25, 480, 490, 499, 1321
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	897
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	1415
Bsa29I	ATCGAT	1 cut(s)	1299
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	1449
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 196
Bse1I	ACTGG	5 cut(s)	180, 439, 940, 1125, 1210
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	836
BseCI	ATCGAT	1 cut(s)	1299
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	6 cut(s)	586, 831, 868, 904, 1069, 1336
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	175, 196
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	5 cut(s)	180, 439, 940, 1125, 1210
BseRI	GAGGAG	2 cut(s)	276, 688
BseSI	GKGCMC	1 cut(s)	1105
BseXI	GCAGC	4 cut(s)	24, 91, 283, 1427
BseYI	CCCAGC	2 cut(s)	280, 893
BsgI	GTGCAG	2 cut(s)	333, 338
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	189, 1363
BshNI	GGYRCC	1 cut(s)	1046
BshVI	ATCGAT	1 cut(s)	1299
BsiHKAI	GWGCWC	3 cut(s)	381, 1105, 1401
BsiSI	CCGG	1 cut(s)	1450
BsiWI	CGTACG	1 cut(s)	1084
BslFI	GGGAC	2 cut(s)	910, 1447
BslI	CCNNNNNNNGG	2 cut(s)	175, 196
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	910, 1447
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	2 cut(s)	189, 1363
Bsp119I	TTCGAA	1 cut(s)	707
Bsp1286I	GDGCHC	3 cut(s)	381, 1105, 1401
Bsp143I	GATC	3 cut(s)	901, 1144, 1442
Bsp68I	TCGCGA	1 cut(s)	84
BspACI	CCGC	4 cut(s)	123, 155, 1115, 1252
BspANI	GGCC	2 cut(s)	189, 1363
BspCNI	CTCAG	1 cut(s)	604
BspDI	ATCGAT	1 cut(s)	1299
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	3 cut(s)	225, 985, 1048
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	1152
BspT104I	TTCGAA	1 cut(s)	707
BspT107I	GGYRCC	1 cut(s)	1046
BsrI	ACTGG	5 cut(s)	180, 439, 940, 1125, 1210
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	901, 1144, 1442
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	2 cut(s)	601, 1183
Bst6I	CTCTTC	1 cut(s)	1168
BstAPI	GCANNNNNTGC	4 cut(s)	28, 490, 509, 1127
BstBI	TTCGAA	1 cut(s)	707
BstDEI	CTNAG	2 cut(s)	591, 1140
BstF5I	GGATG	6 cut(s)	586, 831, 868, 904, 1069, 1336
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	904, 1147, 1445
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	901, 1144, 1442
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 163, 398, 490, 509, 818, 1127, 1340
BstNI	CCWGG	1 cut(s)	836
BstNSI	RCATGY	2 cut(s)	645, 1024
BstSCI	CCNGG	1 cut(s)	834
BstSFI	CTRYAG	1 cut(s)	1011
BstSLI	GKGCMC	1 cut(s)	1105
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	24, 91, 283, 1427
BstV2I	GAAGAC	1 cut(s)	638
Bsu15I	ATCGAT	1 cut(s)	1299
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	2 cut(s)	189, 1363
BsuTUI	ATCGAT	1 cut(s)	1299
BtsCI	GGATG	6 cut(s)	586, 831, 868, 904, 1069, 1336
BtsI	GCAGTG	3 cut(s)	201, 291, 321
BtsIMutI	CAGTG	7 cut(s)	201, 291, 321, 597, 947, 1132, 1203
BtuMI	TCGCGA	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	187, 521
ClaI	ATCGAT	1 cut(s)	1299
Csp6I	GTAC	4 cut(s)	249, 1047, 1085, 1289
CviAII	CATG	6 cut(s)	356, 642, 650, 770, 1021, 1106
CviQI	GTAC	4 cut(s)	249, 1047, 1085, 1289
DdeI	CTNAG	2 cut(s)	591, 1140
DpnI	GATC	3 cut(s)	903, 1146, 1444
DpnII	GATC	3 cut(s)	901, 1144, 1442
DraIII	CACNNNGTG	1 cut(s)	850
Eam1104I	CTCTTC	1 cut(s)	1168
EarI	CTCTTC	1 cut(s)	1168
EciI	GGCGGA	1 cut(s)	1130
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	928
Eco47I	GGWCC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	834
EcoRV	GATATC	1 cut(s)	928
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	6 cut(s)	359, 645, 653, 773, 1024, 1109
FaqI	GGGAC	2 cut(s)	910, 1447
FatI	CATG	6 cut(s)	355, 641, 649, 769, 1020, 1105
FauI	CCCGC	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	1420
FbaI	TGATCA	1 cut(s)	901
Fnu4HI	GCNGC	4 cut(s)	13, 105, 297, 1416
FokI	GGATG	6 cut(s)	573, 818, 855, 891, 1076, 1343
Fsp4HI	GCNGC	4 cut(s)	13, 105, 297, 1416
FspBI	CTAG	3 cut(s)	108, 890, 1229
GluI	GCNGC	4 cut(s)	13, 105, 297, 1416
GsaI	CCCAGC	2 cut(s)	284, 897
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	2 cut(s)	189, 1363
HapII	CCGG	1 cut(s)	1450
Hin1II	CATG	6 cut(s)	359, 645, 653, 773, 1024, 1109
HindIII	AAGCTT	2 cut(s)	458, 1187
HinfI	GANTC	2 cut(s)	828, 1175
HpaII	CCGG	1 cut(s)	1450
HphI	GGTGA	2 cut(s)	693, 1395
Hpy166II	GTNNAC	2 cut(s)	747, 1103
Hpy188I	TCNGA	5 cut(s)	376, 445, 594, 827, 1338
Hpy188III	TCNNGA	7 cut(s)	83, 264, 413, 497, 876, 1167, 1456
Hpy8I	GTNNAC	2 cut(s)	747, 1103
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	6 cut(s)	270, 714, 882, 946, 1374, 1453
HpyCH4III	ACNGT	2 cut(s)	601, 1183
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 163, 398, 490, 509, 818, 1127, 1340
HpyF3I	CTNAG	2 cut(s)	591, 1140
Hsp92II	CATG	6 cut(s)	359, 645, 653, 773, 1024, 1109
KpnI	GGTACC	1 cut(s)	1050
Ksp22I	TGATCA	1 cut(s)	901
Kzo9I	GATC	3 cut(s)	901, 1144, 1442
LmnI	GCTCC	6 cut(s)	19, 48, 171, 289, 983, 1232
Lsp1109I	GCAGC	4 cut(s)	24, 91, 283, 1427
LweI	GCATC	5 cut(s)	25, 480, 490, 499, 1321
MaeI	CTAG	3 cut(s)	108, 890, 1229
MaeIII	GTNAC	4 cut(s)	772, 1027, 1069, 1423
MalI	GATC	3 cut(s)	903, 1146, 1444
MboI	GATC	3 cut(s)	901, 1144, 1442
MboII	GAAGA	5 cut(s)	71, 638, 878, 1155, 1292
MfeI	CAATTG	2 cut(s)	1078, 1247
MhlI	GDGCHC	3 cut(s)	381, 1105, 1401
MluCI	AATT	7 cut(s)	58, 477, 909, 1078, 1211, 1247, 1283
MlyI	GAGTC	1 cut(s)	837
MnlI	CCTC	9 cut(s)	212, 297, 460, 600, 666, 706, 709, 1111, 1405
MroXI	GAANNNNTTC	1 cut(s)	1174
MseI	TTAA	3 cut(s)	480, 1218, 1269
MslI	CAYNNNNRTG	2 cut(s)	921, 1377
MspI	CCGG	1 cut(s)	1450
MspR9I	CCNGG	1 cut(s)	836
MunI	CAATTG	2 cut(s)	1078, 1247
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	1 cut(s)	836
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	8 cut(s)	28, 163, 398, 490, 509, 818, 1127, 1340
NdeI	CATATG	1 cut(s)	1420
NdeII	GATC	3 cut(s)	901, 1144, 1442
NlaIII	CATG	6 cut(s)	359, 645, 653, 773, 1024, 1109
NlaIV	GGNNCC	3 cut(s)	225, 985, 1048
NruI	TCGCGA	1 cut(s)	84
NspI	RCATGY	2 cut(s)	645, 1024
NspV	TTCGAA	1 cut(s)	707
PciI	ACATGT	1 cut(s)	641
PctI	GAATGC	1 cut(s)	821
PdmI	GAANNNNTTC	1 cut(s)	1174
PfeI	GAWTC	1 cut(s)	1175
Pfl23II	CGTACG	1 cut(s)	1084
PfoI	TCCNGGA	1 cut(s)	834
PkrI	GCNGC	4 cut(s)	14, 106, 298, 1417
PleI	GAGTC	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	836
PscI	ACATGT	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	834
PspFI	CCCAGC	2 cut(s)	280, 893
PspGI	CCWGG	1 cut(s)	834
PspLI	CGTACG	1 cut(s)	1084
PspN4I	GGNNCC	3 cut(s)	225, 985, 1048
PspPI	GGNCC	2 cut(s)	187, 521
PstNI	CAGNNNCTG	1 cut(s)	28
RruI	TCGCGA	1 cut(s)	84
RsaI	GTAC	4 cut(s)	250, 1048, 1086, 1290
RsaNI	GTAC	4 cut(s)	249, 1047, 1085, 1289
RseI	CAYNNNNRTG	2 cut(s)	921, 1377
SaqAI	TTAA	3 cut(s)	480, 1218, 1269
SatI	GCNGC	4 cut(s)	13, 105, 297, 1416
Sau3AI	GATC	3 cut(s)	901, 1144, 1442
Sau96I	GGNCC	2 cut(s)	187, 521
SchI	GAGTC	1 cut(s)	837
ScrFI	CCNGG	1 cut(s)	836
SduI	GDGCHC	3 cut(s)	381, 1105, 1401
SfaNI	GCATC	5 cut(s)	25, 480, 490, 499, 1321
SfcI	CTRYAG	1 cut(s)	1011
SfuI	TTCGAA	1 cut(s)	707
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	921, 1377
SmlI	CTYRAG	1 cut(s)	1394
SmoI	CTYRAG	1 cut(s)	1394
Sse9I	AATT	7 cut(s)	58, 477, 909, 1078, 1211, 1247, 1283
SsiI	CCGC	4 cut(s)	123, 155, 1115, 1252
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	3 cut(s)	108, 890, 1229
StyD4I	CCNGG	1 cut(s)	834
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	601, 1183
TaqI	TCGA	2 cut(s)	707, 1299
TasI	AATT	7 cut(s)	58, 477, 909, 1078, 1211, 1247, 1283
TatI	WGTACW	1 cut(s)	1288
TfiI	GAWTC	1 cut(s)	1175
Tru1I	TTAA	3 cut(s)	480, 1218, 1269
Tru9I	TTAA	3 cut(s)	480, 1218, 1269
TscAI	CASTG	7 cut(s)	201, 298, 321, 604, 947, 1132, 1210
TseI	GCWGC	4 cut(s)	12, 104, 296, 1415
TspDTI	ATGAA	4 cut(s)	162, 638, 857, 1317
TspGWI	ACGGA	3 cut(s)	216, 996, 1376
TspRI	CASTG	7 cut(s)	201, 298, 321, 604, 947, 1132, 1210
VneI	GTGCAC	1 cut(s)	1101
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	1283
XceI	RCATGY	2 cut(s)	645, 1024
XmnI	GAANNNNTTC	1 cut(s)	1174
XspI	CTAG	3 cut(s)	108, 890, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.