AT5G61240

Leucine Rich repeats (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011334
Physical Location & Seq
Forward (+)
24629256 .. 24632211
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61240.2

Sequence Viewer

Length: 981 bp
ATGGCTTCTCGCTGTGAGCTACTTCTGATCTGCGTCTTCTCTCTCTTAATTGCTTTTGCTCACTCCAAGACATTGAAGCGAGATGTGAAAGCTTTGAATGAAATCAAAGCCTCTTTGGGATGGAGAGTGGTGTATTCATGGGTTGGTGACGATCCTTGTGGAGATGGAGACCTTCCACCTTGGTCTGGTGTCACGTGTTCTACACAAGGAGACTATAGAGTTGTCACAGAATTAGAAGTTTATGCGGTTTCGATTGTTGGACCTTTCCCCATTGCAGTAACAAACCTTCTGGATTTGACTAGACTGGATCTACATAACAACAAGTTGACTGGTCCAATCCCTCCACAAATTGGACGACTGAAACGGCTGAAAGTACTAAACCTGAGGTGGAATAAACTACAAGATGTGATCCCTCCCGAGATTGGGGAGCTGAAGAGACTAACCCATTTGTACTTGAGCTTCAATAGCTTCAAGGGAGAAATTCCCAAGGAACTAGCTGCTCTTCCCGAGCTTCGGTATCTATACCTTCAAGAAAACCGTCTCATTGGTAGAATTCCTGCCGAACTGGGGACTCTGCAAAACCTTCGCCACCTAGATGTTGGTAACAACCATTTGGTGGGAACTATACGGGAGCTCATCCGTTTTGATGGAAGTTTCCCAGCTCTTCGCAACTTGTACTTGAATAATAACTATTTGAGTGGAGGGATTCCTGCTCAGCTGTCAAATCTTACAAACTTAGAGATTGTTTACCTGTCTTACAACAAATTTATTGGAAACATTCCTTTTGCCATTGCTCATATTCCTAAACTGACATACCTGTACCTTGATCACAACCAATTTACCGGGAGAATCCCAGACGCATTCTACAAGCATCCATTCCTCAAAGAAATGTACATTGAAGGCAACATGTTCAAGTCAGGCGTGAACCCAATTGGTACCCACAAAGTTTTAGAAGTTTCTGATGCCGATTTTGCCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

326

Amino Acids

36.8

Weight (kDa)

8.54

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 141 - 194 1.6e-06 Leucine rich repeat
LRR_14 PF23598 143 - 215 4.9e-06 Leucine-rich repeat region
LRR_4 PF12799 182 - 225 2.9e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 233 - 274 2.1e-07 Leucine Rich repeats (2 copies)
LRR_8 PF13855 233 - 293 7.5e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61240 AT5G61240
fragaria_vesca FvH4_4g30420
malus_domestica MD13G1065200.v1.1 MD16G1063500.v1.1
prunus_persica Prupe.1G283000_v2.0.a1 Prupe.1G283000_v2.0.a1
pyrus_communis pycom13g05760 pycom16g05560
rosa_chinensis RchiOBHm_Chr4g0438711
rosa_laevigata RLG00000006335
rosa_multiflora Rmu_sc0002505.1_g000005
rosa_roxburghii Rroxscaffold_5G00379750
rosa_rugosa Rorug04G0312700
rosa_samantha Rh4AG363300 Rh4BG374700 Rh4CG388900 Rh4DG369200
rosa_wichuraiana Rw0G007180 Rw0G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 935
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 2 cut(s) 350, 616
AciI CCGC 1 cut(s) 245
AclWI GGATC 3 cut(s) 146, 315, 403
AcsI RAATTY 3 cut(s) 480, 552, 764
AcuI CTGAAG 1 cut(s) 452
AcvI CACGTG 1 cut(s) 195
AfaI GTAC 6 cut(s) 375, 452, 677, 821, 893, 937
AfiI CCNNNNNNNGG 7 cut(s) 185, 350, 422, 423, 513, 567, 616
AflIII ACRYGT 2 cut(s) 194, 906
AgsI TTSAA 8 cut(s) 76, 97, 463, 472, 530, 682, 899, 913
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 4 cut(s) 162, 204, 430, 545
AlwI GGATC 3 cut(s) 146, 315, 403
Ama87I CYCGRG 2 cut(s) 416, 506
ApeKI GCWGC 1 cut(s) 497
ApoI RAATTY 3 cut(s) 480, 552, 764
Asp718I GGTACC 1 cut(s) 935
AspS9I GGNCC 2 cut(s) 260, 332
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 1 cut(s) 158
AvaI CYCGRG 2 cut(s) 416, 506
AvaII GGWCC 2 cut(s) 260, 332
AxyI CCTNAGG 1 cut(s) 383
BanI GGYRCC 1 cut(s) 935
BanII GRGCYC 1 cut(s) 636
BarI GAAGNNNNNNTAC 4 cut(s) 270, 302, 443, 475
BbrPI CACGTG 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 484
BccI CCATC 3 cut(s) 114, 158, 641
BceAI ACGGC 2 cut(s) 380, 959
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 1 cut(s) 844
BcoDI GTCTC 4 cut(s) 162, 204, 430, 545
BfaI CTAG 3 cut(s) 300, 494, 593
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 1 cut(s) 499
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 844
Bme18I GGWCC 2 cut(s) 260, 332
BmeT110I CYCGRG 2 cut(s) 416, 506
BmgT120I GGNCC 2 cut(s) 260, 332
BmiI GGNNCC 1 cut(s) 937
BmrFI CCNGG 1 cut(s) 844
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 880, 952
BmuI ACTGGG 1 cut(s) 575
BpiI GAAGAC 1 cut(s) 28
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 844
BsaAI YACGTR 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 179, 486
Bsc4I CCNNNNNNNGG 7 cut(s) 185, 350, 422, 423, 513, 567, 616
Bse1I ACTGG 3 cut(s) 309, 334, 570
Bse21I CCTNAGG 1 cut(s) 383
Bse3DI GCAATG 2 cut(s) 270, 789
BseDI CCNNGG 2 cut(s) 179, 486
BseGI GGATG 3 cut(s) 125, 636, 871
BseLI CCNNNNNNNGG 7 cut(s) 185, 350, 422, 423, 513, 567, 616
BseMI GCAATG 2 cut(s) 270, 789
BseMII CTCAG 2 cut(s) 374, 728
BseNI ACTGG 3 cut(s) 309, 334, 570
BseXI GCAGC 1 cut(s) 484
BseYI CCCAGC 1 cut(s) 658
BshNI GGYRCC 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 2 cut(s) 416, 506
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 7 cut(s) 185, 350, 422, 423, 513, 567, 616
BsmAI GTCTC 4 cut(s) 162, 204, 430, 545
BsmBI CGTCTC 1 cut(s) 545
BsmFI GGGAC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 860
Bso31I GGTCTC 1 cut(s) 162
BsoBI CYCGRG 2 cut(s) 416, 506
Bsp1286I GDGCHC 1 cut(s) 636
Bsp1407I TGTACA 1 cut(s) 891
Bsp143I GATC 5 cut(s) 27, 151, 307, 408, 826
Bsp1720I GCTNAGC 1 cut(s) 714
BspACI CCGC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 375, 727
BspLI GGNNCC 1 cut(s) 937
BspPI GGATC 3 cut(s) 146, 315, 403
BspQI GCTCTTC 2 cut(s) 507, 669
BspT107I GGYRCC 1 cut(s) 935
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 270, 789
BsrGI TGTACA 1 cut(s) 891
BsrI ACTGG 3 cut(s) 309, 334, 570
BssECI CCNNGG 2 cut(s) 179, 486
BssMI GATC 5 cut(s) 27, 151, 307, 408, 826
BssT1I CCWWGG 2 cut(s) 179, 486
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 3 cut(s) 428, 507, 669
BstAUI TGTACA 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 383, 714, 736
BstF5I GGATG 3 cut(s) 125, 636, 871
BstKTI GATC 5 cut(s) 30, 154, 310, 411, 829
BstMAI GTCTC 4 cut(s) 162, 204, 430, 545
BstMBI GATC 5 cut(s) 27, 151, 307, 408, 826
BstMWI GCNNNNNNNGC 2 cut(s) 465, 971
BstNSI RCATGY 1 cut(s) 910
BstSCI CCNGG 1 cut(s) 842
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 383
BtsCI GGATG 3 cut(s) 125, 636, 871
Cfr13I GGNCC 2 cut(s) 260, 332
CseI GACGC 2 cut(s) 22, 866
Csp6I GTAC 6 cut(s) 374, 451, 676, 820, 892, 936
CviAII CATG 2 cut(s) 138, 907
CviQI GTAC 6 cut(s) 374, 451, 676, 820, 892, 936
DdeI CTNAG 3 cut(s) 383, 714, 736
DpnI GATC 5 cut(s) 29, 153, 309, 410, 828
DpnII GATC 5 cut(s) 27, 151, 307, 408, 826
Eam1104I CTCTTC 3 cut(s) 428, 507, 669
EarI CTCTTC 3 cut(s) 428, 507, 669
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 179, 486
Eco24I GRGCYC 1 cut(s) 636
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 260, 332
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 452
Eco72I CACGTG 1 cut(s) 195
Eco81I CCTNAGG 1 cut(s) 383
Eco88I CYCGRG 2 cut(s) 416, 506
EcoICRI GAGCTC 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 552
EcoT14I CCWWGG 2 cut(s) 179, 486
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 179, 486
Esp3I CGTCTC 1 cut(s) 545
FaeI CATG 2 cut(s) 141, 910
FaiI YATR 9 cut(s) 139, 216, 243, 315, 523, 626, 798, 814, 908
FaqI GGGAC 1 cut(s) 583
FatI CATG 2 cut(s) 137, 906
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 3 cut(s) 132, 623, 858
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 3 cut(s) 300, 494, 593
GluI GCNGC 1 cut(s) 498
GsaI CCCAGC 1 cut(s) 662
HapII CCGG 1 cut(s) 843
HgaI GACGC 2 cut(s) 22, 866
Hin1II CATG 2 cut(s) 141, 910
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 3 cut(s) 571, 706, 849
HpaII CCGG 1 cut(s) 843
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 327, 748, 925
Hpy188I TCNGA 2 cut(s) 27, 961
Hpy188III TCNNGA 4 cut(s) 290, 416, 506, 530
Hpy8I GTNNAC 3 cut(s) 327, 748, 925
HpyAV CCTTC 5 cut(s) 182, 296, 536, 593, 893
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 275, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 971
HpyF3I CTNAG 3 cut(s) 383, 714, 736
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 2 cut(s) 141, 910
KpnI GGTACC 1 cut(s) 939
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 27, 151, 307, 408, 826
LguI GCTCTTC 2 cut(s) 507, 669
LmnI GCTCC 2 cut(s) 427, 631
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 2 cut(s) 880, 952
MaeI CTAG 3 cut(s) 300, 494, 593
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 5 cut(s) 146, 190, 223, 277, 602
MalI GATC 5 cut(s) 29, 153, 309, 410, 828
MboI GATC 5 cut(s) 27, 151, 307, 408, 826
MboII GAAGA 4 cut(s) 28, 445, 494, 656
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 636
MluCI AATT 8 cut(s) 48, 230, 348, 480, 552, 764, 836, 930
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 6 cut(s) 121, 351, 378, 423, 695, 890
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 718
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 1 cut(s) 844
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 1 cut(s) 860
MwoI GCNNNNNNNGC 2 cut(s) 465, 971
NciI CCSGG 1 cut(s) 844
NdeII GATC 5 cut(s) 27, 151, 307, 408, 826
NlaIII CATG 2 cut(s) 141, 910
NlaIV GGNNCC 1 cut(s) 937
NmuCI GTSAC 3 cut(s) 146, 190, 223
NspI RCATGY 1 cut(s) 910
PciI ACATGT 1 cut(s) 906
PciSI GCTCTTC 2 cut(s) 507, 669
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 2 cut(s) 706, 849
PflMI CCANNNNNTGG 2 cut(s) 350, 616
PkrI GCNGC 1 cut(s) 499
PleI GAGTC 1 cut(s) 565
PmaCI CACGTG 1 cut(s) 195
PmlI CACGTG 1 cut(s) 195
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 195
PscI ACATGT 1 cut(s) 906
Psp124BI GAGCTC 1 cut(s) 636
PspCI CACGTG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 658
PspN4I GGNNCC 1 cut(s) 937
PspPI GGNCC 2 cut(s) 260, 332
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 718
RsaI GTAC 6 cut(s) 375, 452, 677, 821, 893, 937
RsaNI GTAC 6 cut(s) 374, 451, 676, 820, 892, 936
RseI CAYNNNNRTG 1 cut(s) 594
SacI GAGCTC 1 cut(s) 636
SapI GCTCTTC 2 cut(s) 507, 669
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 5 cut(s) 27, 151, 307, 408, 826
Sau96I GGNCC 2 cut(s) 260, 332
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 844
SduI GDGCHC 1 cut(s) 636
SfaNI GCATC 2 cut(s) 880, 952
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 2 cut(s) 260, 332
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 8 cut(s) 48, 230, 348, 480, 552, 764, 836, 930
SsiI CCGC 1 cut(s) 245
SspMI CTAG 3 cut(s) 300, 494, 593
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 842
StyI CCWWGG 2 cut(s) 179, 486
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 251
TasI AATT 8 cut(s) 48, 230, 348, 480, 552, 764, 836, 930
TatI WGTACW 4 cut(s) 373, 450, 675, 891
TfiI GAWTC 2 cut(s) 706, 849
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 3 cut(s) 146, 190, 223
TseI GCWGC 1 cut(s) 497
Tsp45I GTSAC 3 cut(s) 146, 190, 223
TspDTI ATGAA 2 cut(s) 114, 126
TspGWI ACGGA 1 cut(s) 629
Van91I CCANNNNNTGG 2 cut(s) 350, 616
VpaK11BI GGWCC 2 cut(s) 260, 332
XapI RAATTY 3 cut(s) 480, 552, 764
XceI RCATGY 1 cut(s) 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XspI CTAG 3 cut(s) 300, 494, 593
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.