MD16G1063500.v1.1

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011334
Physical Location & Seq
Forward (+)
4514146 .. 4516992
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1063500.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGCGCTTCGTCTTCCGTTTGCCGCGTTTTCTCTGGTCCTCCTCATCGTCTTCCCTCCGCTGCTTCTCGACGCCAAAACCCTCAAACGCGACATGAAAGCACTGAACGAGATCAAGGCTTCGCTGGGGTGGAGAGTGGTGTACGCCTGGGTAGGAGACGATCCGTGCGGAGACGGCGACCTTCCGCCGTGGTCCGGTGTCACTTGCTCCACTCAAGGCGATTACCGAGTCGTCACCGAGTTGGAGGTTTATGCAGTGTCAATTGTTGGGCCTTTTCCTACGGCTGTCACCAATCTCTTGGATCTCACTAGGCTGGATCTCCATAACAACAAGTTAACCGGCCCTATTCCTCCGCAAATCGGACGTTTGAAGCGTCTCAAAATGCTTAACTTGAGATGGAATAAGCTACAAGATGTCATTCCTCCTGAAATTGGTGAACTGAAGAGTTTAACCCATTTGCATCTTAGCTTTAATAGTTTTAAAGGAGAAATCCCGAAGGAGCTTGCTAATCTTCCTGAGCTTCGCTATCTGTATCTGCAAGAAAATCGCCTTGTTGGGCGGATTCCTCCAGAACTAGGAACTCTGCAAAATCTTCGGCACTTGGACGTTGGTAACAATCATTTGGTGGGTACTATTAGGGAACTCATACGTATTGAGGGCTGCTTTCCCGCTTTGCGTAACCTTTACCTAAACAACAACTATCTTACCGGAGGAATTCCAGCACAGCTTGCAAGCTTGTCCAAACTGGAAATACTGTACCTATCTTACAACAAGATGTCTGGGATAGTTCCATTAGGACTTTCCCATATTCCGAGACTGACGTACTTGTACTTGGATCACAACCAGTTTTCAGGAAGAATTCCTGATGCCTTCTACAAACACCCGTTCTTGAAAGACATGTATATTGAAGGGAATGCATTCCGACCAGGTGTAAAACCGATAGGCATACATAAAGTTCTCGAGCTCACAGACACAGAATTCCTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

330

Amino Acids

37.1

Weight (kDa)

8.81

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 88 - 136 7.5e-06 Leucine rich repeat
LRR_8 PF13855 144 - 184 1.4e-06 Leucine rich repeat
LRR_4 PF12799 172 - 215 1.2e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 223 - 283 2.2e-13 Leucine rich repeat
LRR_4 PF12799 223 - 257 5.4e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 248 - 282 1e-05 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61240 AT5G61240
fragaria_vesca FvH4_4g30420
malus_domestica MD13G1065200.v1.1 MD16G1063500.v1.1
prunus_persica Prupe.1G283000_v2.0.a1 Prupe.1G283000_v2.0.a1
pyrus_communis pycom13g05760 pycom16g05560
rosa_chinensis RchiOBHm_Chr4g0438711
rosa_laevigata RLG00000006335
rosa_multiflora Rmu_sc0002505.1_g000005
rosa_roxburghii Rroxscaffold_5G00379750
rosa_rugosa Rorug04G0312700
rosa_samantha Rh4AG363300 Rh4BG374700 Rh4CG388900 Rh4DG369200
rosa_wichuraiana Rw0G007180 Rw0G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 90
AciI CCGC 7 cut(s) 24, 59, 168, 185, 353, 559, 669
AclWI GGATC 4 cut(s) 155, 309, 324, 843
AcsI RAATTY 3 cut(s) 714, 858, 977
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 5 cut(s) 143, 631, 758, 824, 830
AfiI CCNNNNNNNGG 4 cut(s) 194, 359, 431, 575
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 3 cut(s) 370, 892, 908
AjnI CCWGG 2 cut(s) 146, 925
AluBI AGCT 7 cut(s) 406, 468, 502, 520, 727, 735, 964
AluI AGCT 7 cut(s) 406, 468, 502, 520, 727, 735, 964
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 4 cut(s) 150, 165, 380, 808
AlwI GGATC 4 cut(s) 155, 309, 324, 843
Ama87I CYCGRG 1 cut(s) 959
AoxI GGCC 2 cut(s) 269, 340
ApeKI GCWGC 2 cut(s) 61, 660
ApoI RAATTY 3 cut(s) 714, 858, 977
Asp700I GAANNNNTTC 1 cut(s) 917
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 37, 192, 269, 341
AsuHPI GGTGA 3 cut(s) 226, 280, 446
AvaI CYCGRG 1 cut(s) 959
AvaII GGWCC 2 cut(s) 37, 192
BanII GRGCYC 1 cut(s) 966
BbsI GAAGAC 2 cut(s) 5, 43
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 2 cut(s) 48, 647
BccI CCATC 1 cut(s) 390
BceAI ACGGC 3 cut(s) 172, 190, 297
BcgI CGANNNNNNTGC 4 cut(s) 527, 561, 575, 609
BciT130I CCWGG 2 cut(s) 148, 927
BcoDI GTCTC 4 cut(s) 150, 165, 380, 808
BfaI CTAG 3 cut(s) 309, 575, 988
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 24, 62, 661
BlsI GCNGC 3 cut(s) 25, 63, 662
Bme1390I CCNGG 2 cut(s) 148, 927
Bme18I GGWCC 2 cut(s) 37, 192
BmeT110I CYCGRG 1 cut(s) 959
BmgT120I GGNCC 4 cut(s) 37, 192, 269, 341
BmrFI CCNGG 2 cut(s) 148, 927
BmsI GCATC 2 cut(s) 469, 856
BpiI GAAGAC 2 cut(s) 5, 43
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 198, 412
BsaAI YACGTR 1 cut(s) 650
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 147, 188
BsaWI WCCGGW 2 cut(s) 194, 707
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 359, 431, 575
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 750, 844
BseBI CCWGG 2 cut(s) 148, 927
BseDI CCNNGG 2 cut(s) 147, 188
BseLI CCNNNNNNNGG 4 cut(s) 194, 359, 431, 575
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 750, 844
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 48, 647
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 2 cut(s) 26, 90
BshFI GGCC 2 cut(s) 271, 342
BsiHKAI GWGCWC 1 cut(s) 966
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 3 cut(s) 195, 339, 708
BslI CCNNNNNNNGG 4 cut(s) 194, 359, 431, 575
BsmAI GTCTC 4 cut(s) 150, 165, 380, 808
BsmBI CGTCTC 3 cut(s) 150, 165, 380
BsmI GAATGC 2 cut(s) 917, 919
BsnI GGCC 2 cut(s) 271, 342
BsoBI CYCGRG 1 cut(s) 959
Bsp1286I GDGCHC 1 cut(s) 966
Bsp143I GATC 5 cut(s) 111, 160, 301, 316, 835
BspACI CCGC 7 cut(s) 24, 59, 168, 185, 353, 559, 669
BspANI GGCC 2 cut(s) 271, 342
BspCNI CTCAG 1 cut(s) 508
BspFNI CGCG 2 cut(s) 26, 90
BspPI GGATC 4 cut(s) 155, 309, 324, 843
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 2 cut(s) 750, 844
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 147, 188
BssMI GATC 5 cut(s) 111, 160, 301, 316, 835
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 148, 927
Bst4CI ACNGT 1 cut(s) 756
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 728
BstBAI YACGTR 1 cut(s) 650
BstC8I GCNNGC 3 cut(s) 504, 729, 733
BstDEI CTNAG 2 cut(s) 464, 516
BstDSI CCRYGG 1 cut(s) 188
BstFNI CGCG 2 cut(s) 26, 90
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 114, 163, 304, 319, 838
BstMAI GTCTC 4 cut(s) 150, 165, 380, 808
BstMBI GATC 5 cut(s) 111, 160, 301, 316, 835
BstMWI GCNNNNNNNGC 2 cut(s) 174, 728
BstNI CCWGG 2 cut(s) 148, 927
BstNSI RCATGY 1 cut(s) 901
BstSCI CCNGG 2 cut(s) 146, 925
BstSNI TACGTA 1 cut(s) 650
BstUI CGCG 2 cut(s) 26, 90
BstV1I GCAGC 2 cut(s) 48, 647
BstV2I GAAGAC 2 cut(s) 5, 43
BstX2I RGATCY 2 cut(s) 301, 316
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 301, 316
BsuRI GGCC 2 cut(s) 271, 342
BtgI CCRYGG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 101, 261
Cac8I GCNNGC 3 cut(s) 504, 729, 733
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 4 cut(s) 37, 192, 269, 341
CseI GACGC 2 cut(s) 80, 362
CsiI ACCWGGT 1 cut(s) 925
Csp6I GTAC 5 cut(s) 142, 630, 757, 823, 829
CviAII CATG 2 cut(s) 94, 898
CviQI GTAC 5 cut(s) 142, 630, 757, 823, 829
DdeI CTNAG 2 cut(s) 464, 516
DpnI GATC 5 cut(s) 113, 162, 303, 318, 837
DpnII GATC 5 cut(s) 111, 160, 301, 316, 835
DraI TTTAAA 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
EciI GGCGGA 2 cut(s) 174, 574
Ecl136II GAGCTC 1 cut(s) 964
Eco105I TACGTA 1 cut(s) 650
Eco24I GRGCYC 1 cut(s) 966
Eco47I GGWCC 2 cut(s) 37, 192
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 959
EcoICRI GAGCTC 1 cut(s) 964
EcoRI GAATTC 3 cut(s) 714, 858, 977
EcoRII CCWGG 2 cut(s) 146, 925
EcoT22I ATGCAT 1 cut(s) 919
EcoT38I GRGCYC 1 cut(s) 966
Esp3I CGTCTC 3 cut(s) 150, 165, 380
FaeI CATG 2 cut(s) 97, 901
FaiI YATR 9 cut(s) 95, 252, 324, 647, 807, 899, 903, 947, 951
FatI CATG 2 cut(s) 93, 897
FauI CCCGC 1 cut(s) 676
Fnu4HI GCNGC 3 cut(s) 24, 62, 661
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 3 cut(s) 24, 62, 661
FspBI CTAG 3 cut(s) 309, 575, 988
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 24, 62, 661
GsaI CCCAGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 552
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 271, 342
HapII CCGG 3 cut(s) 195, 339, 708
HgaI GACGC 2 cut(s) 80, 362
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 97, 901
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 2 cut(s) 228, 562
HpaI GTTAAC 1 cut(s) 336
HpaII CCGG 3 cut(s) 195, 339, 708
HphI GGTGA 3 cut(s) 226, 280, 446
Hpy166II GTNNAC 3 cut(s) 142, 336, 437
Hpy188I TCNGA 3 cut(s) 362, 813, 923
Hpy188III TCNNGA 9 cut(s) 68, 425, 493, 515, 569, 852, 863, 889, 959
Hpy8I GTNNAC 3 cut(s) 142, 336, 437
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 191, 490, 880, 902
HpyCH4III ACNGT 1 cut(s) 756
HpyCH4IV ACGT 4 cut(s) 364, 606, 649, 821
HpyCH4V TGCA 6 cut(s) 254, 460, 538, 586, 731, 917
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 728
HpyF3I CTNAG 2 cut(s) 464, 516
HpySE526I ACGT 4 cut(s) 364, 606, 649, 821
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 97, 901
HspAI GCGC 1 cut(s) 5
KspAI GTTAAC 1 cut(s) 336
Kzo9I GATC 5 cut(s) 111, 160, 301, 316, 835
LmnI GCTCC 2 cut(s) 212, 499
Lsp1109I GCAGC 2 cut(s) 48, 647
LweI GCATC 2 cut(s) 469, 856
MabI ACCWGGT 1 cut(s) 925
MaeI CTAG 3 cut(s) 309, 575, 988
MaeII ACGT 4 cut(s) 364, 606, 649, 821
MaeIII GTNAC 5 cut(s) 199, 232, 286, 611, 677
MalI GATC 5 cut(s) 113, 162, 303, 318, 837
MboI GATC 5 cut(s) 111, 160, 301, 316, 835
MboII GAAGA 6 cut(s) 5, 43, 454, 503, 584, 867
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 2 cut(s) 301, 316
MhlI GDGCHC 1 cut(s) 966
MluCI AATT 5 cut(s) 261, 429, 714, 858, 977
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 2 cut(s) 222, 946
Mph1103I ATGCAT 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 917
MseI TTAA 5 cut(s) 335, 387, 449, 471, 480
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 3 cut(s) 195, 339, 708
MspR9I CCNGG 2 cut(s) 148, 927
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 2 cut(s) 917, 919
MvaI CCWGG 2 cut(s) 148, 927
MvnI CGCG 2 cut(s) 26, 90
MwoI GCNNNNNNNGC 2 cut(s) 174, 728
NdeII GATC 5 cut(s) 111, 160, 301, 316, 835
NlaIII CATG 2 cut(s) 97, 901
NmuCI GTSAC 3 cut(s) 199, 232, 286
NsiI ATGCAT 1 cut(s) 919
NspI RCATGY 1 cut(s) 901
PaeR7I CTCGAG 1 cut(s) 959
PciI ACATGT 1 cut(s) 897
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PctI GAATGC 2 cut(s) 917, 919
PdmI GAANNNNTTC 1 cut(s) 917
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 3 cut(s) 25, 63, 662
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Ppu21I YACGTR 1 cut(s) 650
PscI ACATGT 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 966
Psp6I CCWGG 2 cut(s) 146, 925
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 146, 925
PspPI GGNCC 4 cut(s) 37, 192, 269, 341
PsuI RGATCY 2 cut(s) 301, 316
RsaI GTAC 5 cut(s) 143, 631, 758, 824, 830
RsaNI GTAC 5 cut(s) 142, 630, 757, 823, 829
SacI GAGCTC 1 cut(s) 966
SaqAI TTAA 5 cut(s) 335, 387, 449, 471, 480
SatI GCNGC 3 cut(s) 24, 62, 661
Sau3AI GATC 5 cut(s) 111, 160, 301, 316, 835
Sau96I GGNCC 4 cut(s) 37, 192, 269, 341
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 148, 927
SduI GDGCHC 1 cut(s) 966
SexAI ACCWGGT 1 cut(s) 925
SfaNI GCATC 2 cut(s) 469, 856
Sfr274I CTCGAG 1 cut(s) 959
SinI GGWCC 2 cut(s) 37, 192
SlaI CTCGAG 1 cut(s) 959
SmlI CTYRAG 3 cut(s) 213, 391, 959
SmoI CTYRAG 3 cut(s) 213, 391, 959
SnaBI TACGTA 1 cut(s) 650
Sse9I AATT 5 cut(s) 261, 429, 714, 858, 977
SsiI CCGC 7 cut(s) 24, 59, 168, 185, 353, 559, 669
SspMI CTAG 3 cut(s) 309, 575, 988
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 146, 925
TaaI ACNGT 1 cut(s) 756
TaiI ACGT 4 cut(s) 367, 609, 652, 824
TaqI TCGA 2 cut(s) 69, 960
TasI AATT 5 cut(s) 261, 429, 714, 858, 977
TatI WGTACW 1 cut(s) 828
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 5 cut(s) 335, 387, 449, 471, 480
Tru9I TTAA 5 cut(s) 335, 387, 449, 471, 480
TscAI CASTG 2 cut(s) 108, 261
TseFI GTSAC 3 cut(s) 199, 232, 286
TseI GCWGC 2 cut(s) 61, 660
Tsp45I GTSAC 3 cut(s) 199, 232, 286
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 2 cut(s) 6, 153
TspRI CASTG 2 cut(s) 108, 261
VpaK11BI GGWCC 2 cut(s) 37, 192
XapI RAATTY 3 cut(s) 714, 858, 977
XceI RCATGY 1 cut(s) 901
XhoI CTCGAG 1 cut(s) 959
XmnI GAANNNNTTC 1 cut(s) 917
XspI CTAG 3 cut(s) 309, 575, 988
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.