MD13G1065200.v1.1

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011334
Physical Location & Seq
Forward (+)
4535966 .. 4540256
4291 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1065200.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGACAATGGCGCTTCGTCTTCCAATTGCCGCGTTTTCTCTGGTGCTCCTCCTCCTCCTCGTCTTCCCTCCGCTGCTTCTCGACGCTAAAACCCTCAAACGCGACATGAAAGCACTGAACGAGATCAAGGCGTCGCTGGGTTGGAGAGTGGTGTACGCCTGGGTCGGAGACGATCCGTGCGGAGACGGCGACCTTCCGCCGTGGTCCGGCGTCACTTGCTCCACTCAAGGGGATTACCGAGTCGTCACCGAATTGGAGGTTTATGCAGTCTCAATTGTTGGGCCTTTTCCTACTGCCGTCACCAATCTCTTGGATCTCACTAGGCTGGATCTCCATAACAACAAGCTGACCGGCCCAATTCCTCCGCAAATCGGACGTTTGAAGCGTCTCAAAATGCTTAATTTGAGATGGAATAAGCTACAAGATGTCATTCCTCCTGAAATTGGTGAACTCAAGAGTTTGACCCATTTGCATCTAAGCTTTAATAGTTTTAAGGGGGAAATCCCGAAGGAGCTTGCTAATCTTCCTGAGCTTCGTTATCTCTATCTGCAAGAAAATCGCCTTGTTGGGAGGATTCCTCCAGAACTAGGAACTCTGCAAAATCTTCGGCATTTGGATGTTGGTAACAATCATTTGGTGGGTACTATTAGGGAACTCATACGTATTGAGGGCTGCTTTCCAGCTTTGCGTAACCTTTACCTAAACAACAACTACCTTACGGGTGGGATTCCAACACAGCTCGCCAACTTGACCAAATTGGAAATCTTGTACCTATCTTACAACAAGATGTCTGGGATTGTTCCATTAGGACTTTCCCATATTCCGAGATTGACTTACTTGTACTTGGATCACAATCAATTTTCTGGGAGAATTCCCGATGCCTTCTACAAACACCCATTTTTGAAAGACATGTATATTGAGGGGAATGCATTCCGACCAGGCGTAAAACCAATAGGCATACACAAAGTTCTCGAGCTCACCGACACGGAATTTCTCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

334

Amino Acids

37.6

Weight (kDa)

8.81

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 92 - 140 7.5e-06 Leucine rich repeat
LRR_14 PF23598 100 - 207 1.5e-10 Leucine-rich repeat region
LRR_8 PF13855 148 - 188 1.4e-06 Leucine rich repeat
LRR_14 PF23598 170 - 285 5.4e-07 Leucine-rich repeat region
LRR_4 PF12799 176 - 219 1.2e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 227 - 287 2.2e-13 Leucine rich repeat
LRR_4 PF12799 227 - 262 2.3e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 251 - 286 6.4e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61240 AT5G61240
fragaria_vesca FvH4_4g30420
malus_domestica MD13G1065200.v1.1 MD16G1063500.v1.1
prunus_persica Prupe.1G283000_v2.0.a1 Prupe.1G283000_v2.0.a1
pyrus_communis pycom13g05760 pycom16g05560
rosa_chinensis RchiOBHm_Chr4g0438711
rosa_laevigata RLG00000006335
rosa_multiflora Rmu_sc0002505.1_g000005
rosa_roxburghii Rroxscaffold_5G00379750
rosa_rugosa Rorug04G0312700
rosa_samantha Rh4AG363300 Rh4BG374700 Rh4CG388900 Rh4DG369200
rosa_wichuraiana Rw0G007180 Rw0G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 102
AciI CCGC 5 cut(s) 30, 71, 180, 197, 365
AclWI GGATC 4 cut(s) 167, 321, 336, 855
AcsI RAATTY 2 cut(s) 870, 989
AcyI GRCGYC 2 cut(s) 131, 210
AfaI GTAC 4 cut(s) 155, 643, 770, 842
AfiI CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 2 cut(s) 382, 904
AjnI CCWGG 2 cut(s) 158, 937
AluBI AGCT 8 cut(s) 346, 418, 480, 514, 532, 683, 739, 976
AluI AGCT 8 cut(s) 346, 418, 480, 514, 532, 683, 739, 976
Alw21I GWGCWC 2 cut(s) 48, 978
Alw26I GTCTC 4 cut(s) 162, 177, 274, 392
AlwI GGATC 4 cut(s) 167, 321, 336, 855
Ama87I CYCGRG 1 cut(s) 971
AoxI GGCC 2 cut(s) 281, 352
ApeKI GCWGC 2 cut(s) 73, 672
ApoI RAATTY 2 cut(s) 870, 989
Asp700I GAANNNNTTC 1 cut(s) 929
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 3 cut(s) 204, 281, 353
AsuHPI GGTGA 4 cut(s) 238, 292, 458, 970
AvaI CYCGRG 1 cut(s) 971
AvaII GGWCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 978
BbsI GAAGAC 2 cut(s) 11, 55
Bbv12I GWGCWC 2 cut(s) 48, 978
BbvI GCAGC 2 cut(s) 60, 659
BccI CCATC 1 cut(s) 402
BceAI ACGGC 3 cut(s) 184, 202, 281
BcgI CGANNNNNNTGC 4 cut(s) 539, 573, 587, 621
BciT130I CCWGG 2 cut(s) 160, 939
BcoDI GTCTC 4 cut(s) 162, 177, 274, 392
BfaI CTAG 2 cut(s) 321, 587
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 3 cut(s) 30, 74, 673
BlsI GCNGC 3 cut(s) 31, 75, 674
Bme1390I CCNGG 2 cut(s) 160, 939
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 971
BmgT120I GGNCC 3 cut(s) 204, 281, 353
BmrFI CCNGG 2 cut(s) 160, 939
BmsI GCATC 2 cut(s) 481, 868
BpiI GAAGAC 2 cut(s) 11, 55
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 210, 437
BsaAI YACGTR 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 2 cut(s) 131, 210
BsaJI CCNNGG 2 cut(s) 159, 200
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
Bse118I RCCGGY 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 2 cut(s) 160, 939
BseDI CCNNGG 2 cut(s) 159, 200
BseGI GGATG 1 cut(s) 622
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
BseMII CTCAG 1 cut(s) 519
BseRI GAGGAG 4 cut(s) 38, 41, 44, 47
BseXI GCAGC 2 cut(s) 60, 659
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 32, 102
BshFI GGCC 2 cut(s) 283, 354
BsiHKAI GWGCWC 2 cut(s) 48, 978
BsiHKCI CYCGRG 1 cut(s) 971
BsiSI CCGG 2 cut(s) 207, 351
BslI CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
BsmAI GTCTC 4 cut(s) 162, 177, 274, 392
BsmBI CGTCTC 3 cut(s) 162, 177, 392
BsmI GAATGC 2 cut(s) 929, 931
BsnI GGCC 2 cut(s) 283, 354
BsoBI CYCGRG 1 cut(s) 971
Bsp1286I GDGCHC 2 cut(s) 48, 978
Bsp143I GATC 5 cut(s) 123, 172, 313, 328, 847
BspACI CCGC 5 cut(s) 30, 71, 180, 197, 365
BspANI GGCC 2 cut(s) 283, 354
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 2 cut(s) 32, 102
BspPI GGATC 4 cut(s) 167, 321, 336, 855
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 159, 200
BssMI GATC 5 cut(s) 123, 172, 313, 328, 847
BssNI GRCGYC 2 cut(s) 131, 210
Bst2UI CCWGG 2 cut(s) 160, 939
BstACI GRCGYC 2 cut(s) 131, 210
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 516, 741
BstDEI CTNAG 2 cut(s) 476, 528
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 2 cut(s) 32, 102
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 5 cut(s) 126, 175, 316, 331, 850
BstMAI GTCTC 4 cut(s) 162, 177, 274, 392
BstMBI GATC 5 cut(s) 123, 172, 313, 328, 847
BstMWI GCNNNNNNNGC 2 cut(s) 186, 216
BstNI CCWGG 2 cut(s) 160, 939
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 2 cut(s) 158, 937
BstSNI TACGTA 1 cut(s) 662
BstUI CGCG 2 cut(s) 32, 102
BstV1I GCAGC 2 cut(s) 60, 659
BstV2I GAAGAC 2 cut(s) 11, 55
BstX2I RGATCY 2 cut(s) 313, 328
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 2 cut(s) 313, 328
BsuRI GGCC 2 cut(s) 283, 354
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 516, 741
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 3 cut(s) 204, 281, 353
CseI GACGC 4 cut(s) 92, 120, 199, 374
Csp6I GTAC 4 cut(s) 154, 642, 769, 841
CviAII CATG 2 cut(s) 106, 910
CviQI GTAC 4 cut(s) 154, 642, 769, 841
DdeI CTNAG 2 cut(s) 476, 528
DpnI GATC 5 cut(s) 125, 174, 315, 330, 849
DpnII GATC 5 cut(s) 123, 172, 313, 328, 847
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 976
Eco105I TACGTA 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 978
Eco47I GGWCC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 976
Eco88I CYCGRG 1 cut(s) 971
EcoICRI GAGCTC 1 cut(s) 976
EcoRI GAATTC 1 cut(s) 870
EcoRII CCWGG 2 cut(s) 158, 937
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 978
Esp3I CGTCTC 3 cut(s) 162, 177, 392
FaeI CATG 2 cut(s) 109, 913
FaiI YATR 8 cut(s) 107, 264, 336, 659, 819, 911, 915, 959
FatI CATG 2 cut(s) 105, 909
Fnu4HI GCNGC 3 cut(s) 30, 74, 673
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 1 cut(s) 978
Fsp4HI GCNGC 3 cut(s) 30, 74, 673
FspBI CTAG 2 cut(s) 321, 587
GlaI GCGC 1 cut(s) 12
GluI GCNGC 3 cut(s) 30, 74, 673
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 2 cut(s) 283, 354
HapII CCGG 2 cut(s) 207, 351
HgaI GACGC 4 cut(s) 92, 120, 199, 374
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 131, 210
Hin1II CATG 2 cut(s) 109, 913
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 3 cut(s) 240, 574, 727
HpaII CCGG 2 cut(s) 207, 351
HphI GGTGA 4 cut(s) 238, 292, 458, 970
Hpy166II GTNNAC 2 cut(s) 154, 449
Hpy188I TCNGA 4 cut(s) 167, 374, 825, 935
Hpy188III TCNNGA 8 cut(s) 80, 437, 454, 505, 527, 581, 875, 971
Hpy8I GTNNAC 2 cut(s) 154, 449
Hpy99I CGWCG 2 cut(s) 86, 136
HpyAV CCTTC 3 cut(s) 203, 502, 892
HpyCH4IV ACGT 2 cut(s) 376, 661
HpyCH4V TGCA 5 cut(s) 266, 472, 550, 598, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 216
HpyF3I CTNAG 2 cut(s) 476, 528
HpySE526I ACGT 2 cut(s) 376, 661
Hsp92I GRCGYC 2 cut(s) 131, 210
Hsp92II CATG 2 cut(s) 109, 913
HspAI GCGC 1 cut(s) 11
Kzo9I GATC 5 cut(s) 123, 172, 313, 328, 847
LmnI GCTCC 3 cut(s) 51, 224, 511
Lsp1109I GCAGC 2 cut(s) 60, 659
LweI GCATC 2 cut(s) 481, 868
MaeI CTAG 2 cut(s) 321, 587
MaeII ACGT 2 cut(s) 376, 661
MaeIII GTNAC 5 cut(s) 211, 244, 298, 623, 689
MalI GATC 5 cut(s) 125, 174, 315, 330, 849
MboI GATC 5 cut(s) 123, 172, 313, 328, 847
MboII GAAGA 4 cut(s) 11, 55, 515, 596
MfeI CAATTG 2 cut(s) 24, 273
MflI RGATCY 2 cut(s) 313, 328
MhlI GDGCHC 2 cut(s) 48, 978
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 4 cut(s) 122, 145, 755, 958
Mph1103I ATGCAT 1 cut(s) 931
MroXI GAANNNNTTC 1 cut(s) 929
MseI TTAA 3 cut(s) 399, 483, 492
MslI CAYNNNNRTG 1 cut(s) 615
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 2 cut(s) 207, 351
MspR9I CCNGG 2 cut(s) 160, 939
MunI CAATTG 2 cut(s) 24, 273
Mva1269I GAATGC 2 cut(s) 929, 931
MvaI CCWGG 2 cut(s) 160, 939
MvnI CGCG 2 cut(s) 32, 102
MwoI GCNNNNNNNGC 2 cut(s) 186, 216
NdeII GATC 5 cut(s) 123, 172, 313, 328, 847
NlaIII CATG 2 cut(s) 109, 913
NmuCI GTSAC 3 cut(s) 211, 244, 298
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 1 cut(s) 913
PaeR7I CTCGAG 1 cut(s) 971
PciI ACATGT 1 cut(s) 909
PcsI WCGNNNNNNNCGW 2 cut(s) 382, 978
PctI GAATGC 2 cut(s) 929, 931
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 2 cut(s) 574, 727
PkrI GCNGC 3 cut(s) 31, 75, 674
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 662
PscI ACATGT 1 cut(s) 909
Psp124BI GAGCTC 1 cut(s) 978
Psp6I CCWGG 2 cut(s) 158, 937
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 158, 937
PspPI GGNCC 3 cut(s) 204, 281, 353
PsuI RGATCY 2 cut(s) 313, 328
RsaI GTAC 4 cut(s) 155, 643, 770, 842
RsaNI GTAC 4 cut(s) 154, 642, 769, 841
RseI CAYNNNNRTG 1 cut(s) 615
SacI GAGCTC 1 cut(s) 978
SaqAI TTAA 3 cut(s) 399, 483, 492
SatI GCNGC 3 cut(s) 30, 74, 673
Sau3AI GATC 5 cut(s) 123, 172, 313, 328, 847
Sau96I GGNCC 3 cut(s) 204, 281, 353
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 160, 939
SduI GDGCHC 2 cut(s) 48, 978
SfaNI GCATC 2 cut(s) 481, 868
Sfr274I CTCGAG 1 cut(s) 971
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 971
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 3 cut(s) 225, 452, 971
SmoI CTYRAG 3 cut(s) 225, 452, 971
SnaBI TACGTA 1 cut(s) 662
SsiI CCGC 5 cut(s) 30, 71, 180, 197, 365
SspMI CTAG 2 cut(s) 321, 587
SstI GAGCTC 1 cut(s) 978
StyD4I CCNGG 2 cut(s) 158, 937
TaiI ACGT 2 cut(s) 379, 664
TaqI TCGA 2 cut(s) 81, 972
TatI WGTACW 1 cut(s) 840
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 574, 727
Tru1I TTAA 3 cut(s) 399, 483, 492
Tru9I TTAA 3 cut(s) 399, 483, 492
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 3 cut(s) 211, 244, 298
TseI GCWGC 2 cut(s) 73, 672
Tsp45I GTSAC 3 cut(s) 211, 244, 298
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 2 cut(s) 165, 1001
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 2 cut(s) 870, 989
XceI RCATGY 1 cut(s) 913
XhoI CTCGAG 1 cut(s) 971
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 2 cut(s) 321, 587
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.