pycom13g05760

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011334
Physical Location & Seq
Forward (+)
3795368 .. 3797731
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05760.9

Sequence Viewer

Length: 1002 bp
ATGACAATGGCGCTTCGTCTTCCAATTGCCGCGTTTTCTCTGGTCCTCCTCCTCCTCCTCGTCTTCCCTCCGCTGCTTCTCGACGCCAAAACCCTCAAACGCGACATGAAAGCACTGAACGAGATCAAGGCGTCGCTGGGTTGGAGAGTGGTGTACGCCTGGGTCGGAGACGATCCGTGCGGAGACGGCGACCTTCCGCCGTGGTCCGGCGTCACTTGCTCCACTCAAGGGGATTATCGAGTCGTCACCGAATTGGAGGTTTATGCAGTCTCAATTGTTGGGCCTTTTCCTACTGCCGTCACCAATCTCTTGGATCTCACTAGGCTGGATCTCCATAACAACAAGTTGACCGGCCCAATTCCTCCGCAAATCGGACGTTTGAAGCGTCTCAAAATGCTTAACTTGAGATGGAATAAGCTACAAGATGTCATTCCTCCGGAAATTGGTGAACTCAAGAGTTTGACCCATTTACATCTAAGCTTTAATAGTTTTAAGGGGGAAATCCCGAAGGAGCTTGCTAATCTTCCTGAGCTTCGTTATCTCTATCTGCAAGAAAATCGCCTTGTTGGGAGGATTCCTCCAGAACTAGGAACTCTGCAAAATCTTCGGCATTTGGACGTTGGTAACAATCATTTGGTGGGTACTATTAGGGAACTCATACGTATTGAGGGCTGCTTTCCAGCTTTGCGTAACCTTTACCTAAACAACAACTACCTTACGGGAGGGATTCCAGCACAGCTCGCCAACTTGACCAAATTGGAAATCTTGTACCTATCGAACAACAAGATGTCTGGGATTGTTCCATTAGGACTTTCCCATATTCCGAGATTGACTTACTTGTACTTGGATCACAATCAATTTTCTGGGAGAATTCCCGATGCCTTCTACAAACATCCATTTTTGAAAGACATGTATATTGAAGGGAATGCATTCCGACCAGGCGTAAAACCAATAGGCATACACAAAGTTCTCGAGCTCACTGACACGGAATTTCTCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

334

Amino Acids

37.52

Weight (kDa)

8.82

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61240 AT5G61240
fragaria_vesca FvH4_4g30420
malus_domestica MD13G1065200.v1.1 MD16G1063500.v1.1
prunus_persica Prupe.1G283000_v2.0.a1 Prupe.1G283000_v2.0.a1
pyrus_communis pycom13g05760 pycom16g05560
rosa_chinensis RchiOBHm_Chr4g0438711
rosa_laevigata RLG00000006335
rosa_multiflora Rmu_sc0002505.1_g000005
rosa_roxburghii Rroxscaffold_5G00379750
rosa_rugosa Rorug04G0312700
rosa_samantha Rh4AG363300 Rh4BG374700 Rh4CG388900 Rh4DG369200
rosa_wichuraiana Rw0G007180 Rw0G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 102
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 5 cut(s) 30, 71, 180, 197, 365
AclWI GGATC 4 cut(s) 167, 321, 336, 855
AcsI RAATTY 2 cut(s) 870, 989
AcyI GRCGYC 3 cut(s) 84, 131, 210
AfaI GTAC 4 cut(s) 155, 643, 770, 842
AfiI CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 3 cut(s) 382, 904, 920
AjnI CCWGG 2 cut(s) 158, 937
AluBI AGCT 7 cut(s) 418, 480, 514, 532, 683, 739, 976
AluI AGCT 7 cut(s) 418, 480, 514, 532, 683, 739, 976
Alw21I GWGCWC 1 cut(s) 978
Alw26I GTCTC 4 cut(s) 162, 177, 274, 392
AlwI GGATC 4 cut(s) 167, 321, 336, 855
Ama87I CYCGRG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 2 cut(s) 281, 352
ApeKI GCWGC 2 cut(s) 73, 672
ApoI RAATTY 2 cut(s) 870, 989
Asp700I GAANNNNTTC 1 cut(s) 929
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 4 cut(s) 43, 204, 281, 353
AsuHPI GGTGA 3 cut(s) 238, 292, 458
AvaI CYCGRG 1 cut(s) 971
AvaII GGWCC 2 cut(s) 43, 204
BanII GRGCYC 1 cut(s) 978
BbsI GAAGAC 2 cut(s) 11, 55
Bbv12I GWGCWC 1 cut(s) 978
BbvI GCAGC 2 cut(s) 60, 659
BccI CCATC 1 cut(s) 402
BceAI ACGGC 3 cut(s) 184, 202, 281
BcgI CGANNNNNNTGC 4 cut(s) 539, 573, 587, 621
BciT130I CCWGG 2 cut(s) 160, 939
BcoDI GTCTC 4 cut(s) 162, 177, 274, 392
BfaI CTAG 2 cut(s) 321, 587
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 3 cut(s) 30, 74, 673
BlsI GCNGC 3 cut(s) 31, 75, 674
Bme1390I CCNGG 2 cut(s) 160, 939
Bme18I GGWCC 2 cut(s) 43, 204
BmeT110I CYCGRG 1 cut(s) 971
BmgT120I GGNCC 4 cut(s) 43, 204, 281, 353
BmrFI CCNGG 2 cut(s) 160, 939
BmsI GCATC 1 cut(s) 868
BpiI GAAGAC 2 cut(s) 11, 55
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 528
BpuEI CTTGAG 3 cut(s) 210, 424, 437
BsaAI YACGTR 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 3 cut(s) 84, 131, 210
BsaJI CCNNGG 2 cut(s) 159, 200
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
Bse118I RCCGGY 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 2 cut(s) 160, 939
BseDI CCNNGG 2 cut(s) 159, 200
BseGI GGATG 1 cut(s) 892
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
BseMII CTCAG 1 cut(s) 519
BseRI GAGGAG 4 cut(s) 38, 41, 44, 47
BseXI GCAGC 2 cut(s) 60, 659
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 32, 102
BshFI GGCC 2 cut(s) 283, 354
BsiHKAI GWGCWC 1 cut(s) 978
BsiHKCI CYCGRG 1 cut(s) 971
BsiSI CCGG 3 cut(s) 207, 351, 437
BslI CCNNNNNNNGG 5 cut(s) 206, 228, 371, 443, 587
BsmAI GTCTC 4 cut(s) 162, 177, 274, 392
BsmBI CGTCTC 3 cut(s) 162, 177, 392
BsmI GAATGC 2 cut(s) 929, 931
BsnI GGCC 2 cut(s) 283, 354
BsoBI CYCGRG 1 cut(s) 971
Bsp1286I GDGCHC 1 cut(s) 978
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 5 cut(s) 123, 172, 313, 328, 847
BspACI CCGC 5 cut(s) 30, 71, 180, 197, 365
BspANI GGCC 2 cut(s) 283, 354
BspCNI CTCAG 1 cut(s) 520
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 2 cut(s) 32, 102
BspPI GGATC 4 cut(s) 167, 321, 336, 855
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 159, 200
BssMI GATC 5 cut(s) 123, 172, 313, 328, 847
BssNI GRCGYC 3 cut(s) 84, 131, 210
Bst2UI CCWGG 2 cut(s) 160, 939
BstACI GRCGYC 3 cut(s) 84, 131, 210
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 516, 741
BstDEI CTNAG 2 cut(s) 476, 528
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 892
BstFNI CGCG 2 cut(s) 32, 102
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 5 cut(s) 126, 175, 316, 331, 850
BstMAI GTCTC 4 cut(s) 162, 177, 274, 392
BstMBI GATC 5 cut(s) 123, 172, 313, 328, 847
BstMWI GCNNNNNNNGC 3 cut(s) 186, 216, 740
BstNI CCWGG 2 cut(s) 160, 939
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 2 cut(s) 158, 937
BstSNI TACGTA 1 cut(s) 662
BstUI CGCG 2 cut(s) 32, 102
BstV1I GCAGC 2 cut(s) 60, 659
BstV2I GAAGAC 2 cut(s) 11, 55
BstX2I RGATCY 2 cut(s) 313, 328
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 2 cut(s) 313, 328
BsuRI GGCC 2 cut(s) 283, 354
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 892
BtsIMutI CAGTG 2 cut(s) 113, 978
Cac8I GCNNGC 2 cut(s) 516, 741
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 4 cut(s) 43, 204, 281, 353
CseI GACGC 4 cut(s) 92, 120, 199, 374
Csp6I GTAC 4 cut(s) 154, 642, 769, 841
CviAII CATG 2 cut(s) 106, 910
CviQI GTAC 4 cut(s) 154, 642, 769, 841
DdeI CTNAG 2 cut(s) 476, 528
DpnI GATC 5 cut(s) 125, 174, 315, 330, 849
DpnII GATC 5 cut(s) 123, 172, 313, 328, 847
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 976
Eco105I TACGTA 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 978
Eco47I GGWCC 2 cut(s) 43, 204
Eco53kI GAGCTC 1 cut(s) 976
Eco88I CYCGRG 1 cut(s) 971
EcoICRI GAGCTC 1 cut(s) 976
EcoRI GAATTC 1 cut(s) 870
EcoRII CCWGG 2 cut(s) 158, 937
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 978
Esp3I CGTCTC 3 cut(s) 162, 177, 392
FaeI CATG 2 cut(s) 109, 913
FaiI YATR 8 cut(s) 107, 264, 336, 659, 819, 911, 915, 959
FatI CATG 2 cut(s) 105, 909
Fnu4HI GCNGC 3 cut(s) 30, 74, 673
FokI GGATG 1 cut(s) 879
FriOI GRGCYC 1 cut(s) 978
Fsp4HI GCNGC 3 cut(s) 30, 74, 673
FspBI CTAG 2 cut(s) 321, 587
GlaI GCGC 1 cut(s) 12
GluI GCNGC 3 cut(s) 30, 74, 673
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 2 cut(s) 283, 354
HapII CCGG 3 cut(s) 207, 351, 437
HgaI GACGC 4 cut(s) 92, 120, 199, 374
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 3 cut(s) 84, 131, 210
Hin1II CATG 2 cut(s) 109, 913
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 3 cut(s) 240, 574, 727
HpaII CCGG 3 cut(s) 207, 351, 437
HphI GGTGA 3 cut(s) 238, 292, 458
Hpy166II GTNNAC 3 cut(s) 154, 348, 449
Hpy188I TCNGA 4 cut(s) 167, 374, 825, 935
Hpy188III TCNNGA 8 cut(s) 80, 437, 454, 505, 527, 581, 875, 971
Hpy8I GTNNAC 3 cut(s) 154, 348, 449
Hpy99I CGWCG 2 cut(s) 86, 136
HpyAV CCTTC 4 cut(s) 203, 502, 892, 914
HpyCH4IV ACGT 3 cut(s) 376, 618, 661
HpyCH4V TGCA 4 cut(s) 266, 550, 598, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 216, 740
HpyF3I CTNAG 2 cut(s) 476, 528
HpySE526I ACGT 3 cut(s) 376, 618, 661
Hsp92I GRCGYC 3 cut(s) 84, 131, 210
Hsp92II CATG 2 cut(s) 109, 913
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 436
Kzo9I GATC 5 cut(s) 123, 172, 313, 328, 847
LmnI GCTCC 2 cut(s) 224, 511
Lsp1109I GCAGC 2 cut(s) 60, 659
LweI GCATC 1 cut(s) 868
MaeI CTAG 2 cut(s) 321, 587
MaeII ACGT 3 cut(s) 376, 618, 661
MaeIII GTNAC 5 cut(s) 211, 244, 298, 623, 689
MalI GATC 5 cut(s) 125, 174, 315, 330, 849
MboI GATC 5 cut(s) 123, 172, 313, 328, 847
MboII GAAGA 4 cut(s) 11, 55, 515, 596
MfeI CAATTG 2 cut(s) 24, 273
MflI RGATCY 2 cut(s) 313, 328
MhlI GDGCHC 1 cut(s) 978
MluCI AATT 9 cut(s) 24, 251, 273, 357, 441, 755, 857, 870, 989
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 3 cut(s) 122, 145, 958
Mph1103I ATGCAT 1 cut(s) 931
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 929
MseI TTAA 3 cut(s) 399, 483, 492
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 3 cut(s) 207, 351, 437
MspR9I CCNGG 2 cut(s) 160, 939
MunI CAATTG 2 cut(s) 24, 273
Mva1269I GAATGC 2 cut(s) 929, 931
MvaI CCWGG 2 cut(s) 160, 939
MvnI CGCG 2 cut(s) 32, 102
MwoI GCNNNNNNNGC 3 cut(s) 186, 216, 740
NdeII GATC 5 cut(s) 123, 172, 313, 328, 847
NlaIII CATG 2 cut(s) 109, 913
NmuCI GTSAC 3 cut(s) 211, 244, 298
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 1 cut(s) 913
PaeR7I CTCGAG 1 cut(s) 971
PciI ACATGT 1 cut(s) 909
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PctI GAATGC 2 cut(s) 929, 931
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 2 cut(s) 574, 727
PkrI GCNGC 3 cut(s) 31, 75, 674
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 662
PscI ACATGT 1 cut(s) 909
Psp124BI GAGCTC 1 cut(s) 978
Psp6I CCWGG 2 cut(s) 158, 937
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 158, 937
PspPI GGNCC 4 cut(s) 43, 204, 281, 353
PsuI RGATCY 2 cut(s) 313, 328
RsaI GTAC 4 cut(s) 155, 643, 770, 842
RsaNI GTAC 4 cut(s) 154, 642, 769, 841
SacI GAGCTC 1 cut(s) 978
SaqAI TTAA 3 cut(s) 399, 483, 492
SatI GCNGC 3 cut(s) 30, 74, 673
Sau3AI GATC 5 cut(s) 123, 172, 313, 328, 847
Sau96I GGNCC 4 cut(s) 43, 204, 281, 353
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 160, 939
SduI GDGCHC 1 cut(s) 978
SfaNI GCATC 1 cut(s) 868
Sfr274I CTCGAG 1 cut(s) 971
SinI GGWCC 2 cut(s) 43, 204
SlaI CTCGAG 1 cut(s) 971
SmlI CTYRAG 4 cut(s) 225, 403, 452, 971
SmoI CTYRAG 4 cut(s) 225, 403, 452, 971
SnaBI TACGTA 1 cut(s) 662
Sse9I AATT 9 cut(s) 24, 251, 273, 357, 441, 755, 857, 870, 989
SsiI CCGC 5 cut(s) 30, 71, 180, 197, 365
SspMI CTAG 2 cut(s) 321, 587
SstI GAGCTC 1 cut(s) 978
StyD4I CCNGG 2 cut(s) 158, 937
TaiI ACGT 3 cut(s) 379, 621, 664
TaqI TCGA 4 cut(s) 81, 238, 776, 972
TasI AATT 9 cut(s) 24, 251, 273, 357, 441, 755, 857, 870, 989
TatI WGTACW 1 cut(s) 840
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 574, 727
Tru1I TTAA 3 cut(s) 399, 483, 492
Tru9I TTAA 3 cut(s) 399, 483, 492
TscAI CASTG 2 cut(s) 120, 985
TseFI GTSAC 3 cut(s) 211, 244, 298
TseI GCWGC 2 cut(s) 73, 672
Tsp45I GTSAC 3 cut(s) 211, 244, 298
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 2 cut(s) 165, 1001
TspRI CASTG 2 cut(s) 120, 985
VpaK11BI GGWCC 2 cut(s) 43, 204
XapI RAATTY 2 cut(s) 870, 989
XceI RCATGY 1 cut(s) 913
XhoI CTCGAG 1 cut(s) 971
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 2 cut(s) 321, 587
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.