Rh4CG388900

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011334
Physical Location & Seq
Forward (+)
64001598 .. 64006636
5039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG388900.1

Sequence Viewer

Length: 897 bp
ATGGCGCTTCGTTTTCACTTCACCGCATTCTCTCTGATCCTCCTCCTTTTCCCTCTGCTCCTCCACGCCAAAACCCTAAAACGTGACATGAAAGCATTGAACGAGATCAAGGCTTCGCTCGGCTGGAGAGTAGTCTACGCCTGGGTCGGAGACGATCCCTGCGGCGACGGCGATCTTCCGCCCTGGTCCGGCGTCACTTGCTCCACTCAAGGCGATTACCGAGTCGTCACTGAGTTGGAGGTTTATGCAGTCTCAATTGTTGGGCCTTTTCCTACTGCCGTCACCAATCTCTTGGATCTCACTAGGCTGGATCTTCATAACAACAAGTTAACGGGGCCTATCCCTCCTCAGATTGGACGATTGAAGCGCCTGAGAATACTTAACTTGAGATGGAATAAGCTACAAGATGTCATTCCTCCTGAGATTGGTGAACTGAAGAGTTTAACCCATTTGTATCTAAGCTTCAACAGTTTCAAAGGGGAAATTCCTAAGGAGCTTGCTAATCTACCAGCTCTTCGCTATCTCTATCTGCAAGAAAATCGTCTTATTGGGCGAATTCCACCAGAACTAGGAACTCTGCAAAATCTTCGGCACTTGGATGTCGGCAACAATCATTTGGTGGGTACTATTCGGGAACTCATACGCATTGAGGGCTGCTTTCCGGCTTTGCGTAACCTTTACCTAAACAACAATTATCTTACGGGAGGAATTCCAGCTCAGCTTGCCAACTTGACCAACTTGGAAATCTTGTACCTGTCTTACAACAAGATGTCTGGGATTGTTCCATTAGCAATATCCCATATTCCTCGATTGACTTACTTGTACTTGGATCACAATCAGTTTTCGGGGAGAATTCCTGATGCCTTCTATAAACACTCATTCTTGAAAGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

298

Amino Acids

33.83

Weight (kDa)

9.15

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 94 - 201 2.9e-10 Leucine-rich repeat region
LRR_8 PF13855 142 - 182 4.7e-07 Leucine rich repeat
LRR_4 PF12799 146 - 186 4.6e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 170 - 213 9e-07 Leucine Rich repeats (2 copies)
LRR_4 PF12799 221 - 257 2.5e-07 Leucine Rich repeats (2 copies)
LRR_8 PF13855 221 - 281 3.6e-14 Leucine rich repeat
LRR_4 PF12799 245 - 280 1.4e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61240 AT5G61240
fragaria_vesca FvH4_4g30420
malus_domestica MD13G1065200.v1.1 MD16G1063500.v1.1
prunus_persica Prupe.1G283000_v2.0.a1 Prupe.1G283000_v2.0.a1
pyrus_communis pycom13g05760 pycom16g05560
rosa_chinensis RchiOBHm_Chr4g0438711
rosa_laevigata RLG00000006335
rosa_multiflora Rmu_sc0002505.1_g000005
rosa_roxburghii Rroxscaffold_5G00379750
rosa_rugosa Rorug04G0312700
rosa_samantha Rh4AG363300 Rh4BG374700 Rh4CG388900 Rh4DG369200
rosa_wichuraiana Rw0G007180 Rw0G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AciI CCGC 3 cut(s) 24, 162, 179
AclWI GGATC 5 cut(s) 31, 149, 303, 318, 837
AcsI RAATTY 4 cut(s) 483, 555, 708, 852
AcuI CTGAAG 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 3 cut(s) 625, 752, 824
AfiI CCNNNNNNNGG 4 cut(s) 188, 353, 425, 569
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 5 cut(s) 100, 364, 466, 475, 886
AjnI CCWGG 2 cut(s) 140, 182
AluBI AGCT 6 cut(s) 400, 462, 496, 512, 716, 721
AluI AGCT 6 cut(s) 400, 462, 496, 512, 716, 721
Alw26I GTCTC 2 cut(s) 144, 256
AlwI GGATC 5 cut(s) 31, 149, 303, 318, 837
AoxI GGCC 2 cut(s) 263, 335
ApeKI GCWGC 1 cut(s) 654
ApoI RAATTY 4 cut(s) 483, 555, 708, 852
AspLEI GCGC 2 cut(s) 7, 369
AspS9I GGNCC 3 cut(s) 186, 263, 335
AsuHPI GGTGA 3 cut(s) 13, 274, 440
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 489
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbvI GCAGC 1 cut(s) 641
BccI CCATC 1 cut(s) 384
BceAI ACGGC 2 cut(s) 184, 263
BcgI CGANNNNNNTGC 4 cut(s) 521, 555, 569, 603
BciT130I CCWGG 2 cut(s) 142, 184
BcoDI GTCTC 2 cut(s) 144, 256
BfaI CTAG 2 cut(s) 303, 569
BfoI RGCGCY 2 cut(s) 8, 370
BisI GCNGC 2 cut(s) 163, 655
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 2 cut(s) 164, 656
Bme1390I CCNGG 2 cut(s) 142, 184
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 3 cut(s) 186, 263, 335
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 142, 184
BmsI GCATC 1 cut(s) 850
BpmI CTGGAG 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 717
BpuEI CTTGAG 2 cut(s) 192, 406
BsaBI GATNNNNATC 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 141, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 353, 425, 569
Bse21I CCTNAGG 1 cut(s) 489
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 2 cut(s) 142, 184
BseDI CCNNGG 2 cut(s) 141, 182
BseGI GGATG 1 cut(s) 604
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 4 cut(s) 188, 353, 425, 569
BseMII CTCAG 5 cut(s) 222, 362, 362, 411, 731
BseRI GAGGAG 3 cut(s) 32, 50, 336
BseXI GCAGC 1 cut(s) 641
BshFI GGCC 2 cut(s) 265, 337
BsiSI CCGG 2 cut(s) 189, 662
BslI CCNNNNNNNGG 4 cut(s) 188, 353, 425, 569
BsmAI GTCTC 2 cut(s) 144, 256
BsmBI CGTCTC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 265, 337
Bsp143I GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 3 cut(s) 24, 162, 179
BspANI GGCC 2 cut(s) 265, 337
BspCNI CTCAG 5 cut(s) 223, 361, 363, 412, 730
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 5 cut(s) 31, 149, 303, 318, 837
BspQI GCTCTTC 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 141, 182
BssMI GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 142, 184
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 431, 519
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 498, 723
BstDEI CTNAG 7 cut(s) 231, 348, 371, 420, 458, 489, 717
BstF5I GGATG 1 cut(s) 604
BstH2I RGCGCY 2 cut(s) 8, 370
BstHHI GCGC 2 cut(s) 7, 369
BstKTI GATC 7 cut(s) 39, 108, 157, 175, 298, 313, 832
BstMAI GTCTC 2 cut(s) 144, 256
BstMBI GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
BstMWI GCNNNNNNNGC 4 cut(s) 168, 198, 651, 722
BstNI CCWGG 2 cut(s) 142, 184
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 2 cut(s) 140, 182
BstV1I GCAGC 1 cut(s) 641
BstX2I RGATCY 2 cut(s) 295, 310
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 2 cut(s) 295, 310
Bsu36I CCTNAGG 1 cut(s) 489
BsuRI GGCC 2 cut(s) 265, 337
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 498, 723
CfoI GCGC 2 cut(s) 7, 369
Cfr13I GGNCC 3 cut(s) 186, 263, 335
CseI GACGC 1 cut(s) 181
Csp6I GTAC 3 cut(s) 624, 751, 823
CviAII CATG 2 cut(s) 88, 892
CviQI GTAC 3 cut(s) 624, 751, 823
DdeI CTNAG 7 cut(s) 231, 348, 371, 420, 458, 489, 717
DpnI GATC 7 cut(s) 38, 107, 156, 174, 297, 312, 831
DpnII GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
Eam1104I CTCTTC 2 cut(s) 431, 519
EarI CTCTTC 2 cut(s) 431, 519
EciI GGCGGA 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 455
Eco81I CCTNAGG 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 335
EcoRI GAATTC 3 cut(s) 555, 708, 852
EcoRII CCWGG 2 cut(s) 140, 182
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 91, 895
FaiI YATR 7 cut(s) 89, 246, 318, 641, 801, 870, 893
FatI CATG 2 cut(s) 87, 891
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 163, 655
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 2 cut(s) 163, 655
FspBI CTAG 2 cut(s) 303, 569
GlaI GCGC 2 cut(s) 6, 368
GluI GCNGC 2 cut(s) 163, 655
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 2 cut(s) 8, 370
HaeIII GGCC 2 cut(s) 265, 337
HapII CCGG 2 cut(s) 189, 662
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 7, 369
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 91, 895
Hin6I GCGC 2 cut(s) 5, 367
HinP1I GCGC 2 cut(s) 5, 367
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 1 cut(s) 222
HpaI GTTAAC 1 cut(s) 330
HpaII CCGG 2 cut(s) 189, 662
HphI GGTGA 3 cut(s) 13, 274, 440
Hpy166II GTNNAC 3 cut(s) 136, 330, 431
Hpy188I TCNGA 3 cut(s) 36, 149, 351
Hpy188III TCNNGA 4 cut(s) 419, 632, 857, 883
Hpy8I GTNNAC 3 cut(s) 136, 330, 431
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 874
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 248, 532, 580
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 198, 651, 722
HpyF3I CTNAG 7 cut(s) 231, 348, 371, 420, 458, 489, 717
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 91, 895
HspAI GCGC 2 cut(s) 5, 367
KspAI GTTAAC 1 cut(s) 330
Kzo9I GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 3 cut(s) 63, 206, 493
Lsp1109I GCAGC 1 cut(s) 641
LweI GCATC 1 cut(s) 850
MaeI CTAG 2 cut(s) 303, 569
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 5 cut(s) 83, 193, 226, 280, 671
MalI GATC 7 cut(s) 38, 107, 156, 174, 297, 312, 831
MboI GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
MboII GAAGA 5 cut(s) 167, 305, 448, 506, 578
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 295, 310
MluCI AATT 6 cut(s) 255, 483, 555, 691, 708, 852
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 127, 216
MseI TTAA 3 cut(s) 329, 381, 443
MslI CAYNNNNRTG 1 cut(s) 597
MspI CCGG 2 cut(s) 189, 662
MspR9I CCNGG 2 cut(s) 142, 184
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 2 cut(s) 142, 184
MwoI GCNNNNNNNGC 4 cut(s) 168, 198, 651, 722
NdeII GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
NlaIII CATG 2 cut(s) 91, 895
NlaIV GGNNCC 1 cut(s) 336
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 4 cut(s) 83, 193, 226, 280
NspI RCATGY 1 cut(s) 895
PciI ACATGT 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 164, 656
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PscI ACATGT 1 cut(s) 891
Psp6I CCWGG 2 cut(s) 140, 182
PspGI CCWGG 2 cut(s) 140, 182
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 3 cut(s) 186, 263, 335
PsuI RGATCY 2 cut(s) 295, 310
RsaI GTAC 3 cut(s) 625, 752, 824
RsaNI GTAC 3 cut(s) 624, 751, 823
RseI CAYNNNNRTG 1 cut(s) 597
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 3 cut(s) 329, 381, 443
SatI GCNGC 2 cut(s) 163, 655
Sau3AI GATC 7 cut(s) 36, 105, 154, 172, 295, 310, 829
Sau96I GGNCC 3 cut(s) 186, 263, 335
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 2 cut(s) 142, 184
SfaNI GCATC 1 cut(s) 850
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 207, 385
SmoI CTYRAG 2 cut(s) 207, 385
Sse9I AATT 6 cut(s) 255, 483, 555, 691, 708, 852
SsiI CCGC 3 cut(s) 24, 162, 179
SspMI CTAG 2 cut(s) 303, 569
StyD4I CCNGG 2 cut(s) 140, 182
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 808
TasI AATT 6 cut(s) 255, 483, 555, 691, 708, 852
TatI WGTACW 1 cut(s) 822
TauI GCSGC 1 cut(s) 165
Tru1I TTAA 3 cut(s) 329, 381, 443
Tru9I TTAA 3 cut(s) 329, 381, 443
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 4 cut(s) 83, 193, 226, 280
TseI GCWGC 1 cut(s) 654
Tsp45I GTSAC 4 cut(s) 83, 193, 226, 280
TspDTI ATGAA 2 cut(s) 104, 305
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 4 cut(s) 483, 555, 708, 852
XceI RCATGY 1 cut(s) 895
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 303, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.