Prupe.1G283000_v2.0.a1

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011334
Physical Location & Seq
Reverse (-)
28531297 .. 28534664
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G283000.1

Sequence Viewer

Length: 987 bp
ATGGCGCTTCGTTTTTCGTTAGCAGCATTTTCTCTGATCCTCCTTCTATCCTATCCTCTGCTTCTCAACGCCAAAACCCTCAAACGTGACATGAAAGCATTGAACGAGATCAAGGCTTCGCTCGGATGGAGAGTCGTGTACGCTTGGGTCGGAGACGATCCTTGCGGAGACGGCGACCTTCCGCCGTGGTCCGGCGTCACTTGCTCCACTCAAGGCGATTATCGAGTTGTCACTGAGTTGGAGGTTTATGCAGTCTCAATTGTTGGCCCTTTTCCTACTGCTGTCACCAATCTCTTGGATCTCACTAGGCTGGATCTCCATAACAACAAGCTGACGGGCCCTATTCCCCCCCAAATTGGACGTTTGAAGCGTCTTAAAATGCTTAATTTGAGATGGAATAAGTTACAAGATGTCATTCCTCCTGAAATTGGTGAACTGAAGAGTTTAACCCATTTGCATCTAAGCTTTAATAGTTTCAAAGGGGAAATTCCAAAGGAGCTTGCTAATCTTCCAGAGCTTCGCTATCTCTATCTGCAAGAAAATCGTCTTGTTGGGCGGATTCCTGCAGAACTAGGAACTTTGCAAAATCTTCGGCACTTGGACGTTGGTAATAATCATTTGGTGGGTACCATTAGGGAACTCATACGTATCGAGGGCTGCTTTCCAGCTTTACGTAACCTTTACTTAAACAACAACTATCTTACGGGAGGAATTCCAGCACAGCTTGCAAACTTGACCAAGTTGGAAATCTTGTACCTATCTTACAACAAGATGTCTGGGATAGTTCCATTAGGACTTTCCCATATTCCGAGATTGACTTACTTGTATTTGGATCACAATCAATTTTCAGGGAGAATTCCCGATGCCTTCTATAAACACCCATTCTTGAAAGACATGTATATTGAAGGGAATGCATTCAGACCAGGTGTGAAACCGATAGGCATACACAAAGTTCTTGAGCTCACTGACACGGAATTTCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

329

Amino Acids

37.03

Weight (kDa)

8.96

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61240 AT5G61240
fragaria_vesca FvH4_4g30420
malus_domestica MD13G1065200.v1.1 MD16G1063500.v1.1
prunus_persica Prupe.1G283000_v2.0.a1 Prupe.1G283000_v2.0.a1
pyrus_communis pycom13g05760 pycom16g05560
rosa_chinensis RchiOBHm_Chr4g0438711
rosa_laevigata RLG00000006335
rosa_multiflora Rmu_sc0002505.1_g000005
rosa_roxburghii Rroxscaffold_5G00379750
rosa_rugosa Rorug04G0312700
rosa_samantha Rh4AG363300 Rh4BG374700 Rh4CG388900 Rh4DG369200
rosa_wichuraiana Rw0G007180 Rw0G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 626
AciI CCGC 3 cut(s) 165, 182, 556
AclWI GGATC 5 cut(s) 31, 152, 306, 321, 840
AcsI RAATTY 4 cut(s) 486, 711, 855, 974
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 3 cut(s) 140, 628, 755
AfiI CCNNNNNNNGG 3 cut(s) 191, 356, 428
AflIII ACRYGT 1 cut(s) 894
AgsI TTSAA 5 cut(s) 103, 367, 478, 889, 905
AjnI CCWGG 1 cut(s) 922
AluBI AGCT 7 cut(s) 331, 465, 499, 517, 668, 724, 961
AluI AGCT 7 cut(s) 331, 465, 499, 517, 668, 724, 961
Alw21I GWGCWC 1 cut(s) 963
Alw26I GTCTC 3 cut(s) 147, 162, 259
AlwI GGATC 5 cut(s) 31, 152, 306, 321, 840
AoxI GGCC 2 cut(s) 265, 337
ApaI GGGCCC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 23, 657
ApoI RAATTY 4 cut(s) 486, 711, 855, 974
Asp700I GAANNNNTTC 1 cut(s) 914
Asp718I GGTACC 1 cut(s) 626
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 189, 266, 337, 338
AsuHPI GGTGA 2 cut(s) 277, 443
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 2 cut(s) 341, 963
Bbv12I GWGCWC 1 cut(s) 963
BbvI GCAGC 2 cut(s) 35, 644
BccI CCATC 2 cut(s) 120, 387
BceAI ACGGC 2 cut(s) 169, 187
BcgI CGANNNNNNTGC 4 cut(s) 524, 558, 572, 606
BciT130I CCWGG 1 cut(s) 924
BcoDI GTCTC 3 cut(s) 147, 162, 259
BfaI CTAG 2 cut(s) 306, 572
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 24, 658
BlsI GCNGC 2 cut(s) 25, 659
Bme1390I CCNGG 1 cut(s) 924
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 4 cut(s) 189, 266, 337, 338
BmiI GGNNCC 2 cut(s) 339, 628
BmrFI CCNGG 1 cut(s) 924
BmsI GCATC 2 cut(s) 466, 853
BpuEI CTTGAG 2 cut(s) 195, 977
BsaAI YACGTR 2 cut(s) 647, 674
BsaBI GATNNNNATC 1 cut(s) 837
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 356, 428
Bse8I GATNNNNATC 1 cut(s) 837
BseBI CCWGG 1 cut(s) 924
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 837
BseLI CCNNNNNNNGG 3 cut(s) 191, 356, 428
BseMII CTCAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 2 cut(s) 35, 644
BshFI GGCC 2 cut(s) 267, 339
BshNI GGYRCC 1 cut(s) 626
BsiHKAI GWGCWC 1 cut(s) 963
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 191, 356, 428
BsmAI GTCTC 3 cut(s) 147, 162, 259
BsmBI CGTCTC 2 cut(s) 147, 162
BsmI GAATGC 2 cut(s) 914, 916
BsnI GGCC 2 cut(s) 267, 339
Bsp120I GGGCCC 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 341, 963
Bsp143I GATC 6 cut(s) 36, 108, 157, 298, 313, 832
BspACI CCGC 3 cut(s) 165, 182, 556
BspANI GGCC 2 cut(s) 267, 339
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 339, 628
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 5 cut(s) 31, 152, 306, 321, 840
BspT107I GGYRCC 1 cut(s) 626
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 6 cut(s) 36, 108, 157, 298, 313, 832
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 924
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 725
BstBAI YACGTR 2 cut(s) 647, 674
BstC8I GCNNGC 2 cut(s) 501, 726
BstDEI CTNAG 2 cut(s) 234, 461
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 6 cut(s) 39, 111, 160, 301, 316, 835
BstMAI GTCTC 3 cut(s) 147, 162, 259
BstMBI GATC 6 cut(s) 36, 108, 157, 298, 313, 832
BstMWI GCNNNNNNNGC 3 cut(s) 171, 201, 725
BstNI CCWGG 1 cut(s) 924
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 1 cut(s) 922
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 341
BstSNI TACGTA 2 cut(s) 647, 674
BstV1I GCAGC 2 cut(s) 35, 644
BstX2I RGATCY 2 cut(s) 298, 313
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 2 cut(s) 298, 313
BsuRI GGCC 2 cut(s) 267, 339
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 231, 963
Cac8I GCNNGC 2 cut(s) 501, 726
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 4 cut(s) 189, 266, 337, 338
CseI GACGC 2 cut(s) 184, 359
CsiI ACCWGGT 1 cut(s) 922
Csp6I GTAC 3 cut(s) 139, 627, 754
CviAII CATG 2 cut(s) 91, 895
CviQI GTAC 3 cut(s) 139, 627, 754
DdeI CTNAG 2 cut(s) 234, 461
DpnI GATC 6 cut(s) 38, 110, 159, 300, 315, 834
DpnII GATC 6 cut(s) 36, 108, 157, 298, 313, 832
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 2 cut(s) 171, 571
Ecl136II GAGCTC 1 cut(s) 961
Eco105I TACGTA 2 cut(s) 647, 674
Eco24I GRGCYC 2 cut(s) 341, 963
Eco47I GGWCC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 961
Eco57I CTGAAG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 961
EcoO109I RGGNCCY 1 cut(s) 338
EcoRI GAATTC 2 cut(s) 711, 855
EcoRII CCWGG 1 cut(s) 922
EcoT22I ATGCAT 1 cut(s) 916
EcoT38I GRGCYC 2 cut(s) 341, 963
Esp3I CGTCTC 2 cut(s) 147, 162
FaeI CATG 2 cut(s) 94, 898
FaiI YATR 9 cut(s) 92, 249, 321, 644, 804, 873, 896, 900, 944
FatI CATG 2 cut(s) 90, 894
Fnu4HI GCNGC 2 cut(s) 24, 658
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 2 cut(s) 341, 963
Fsp4HI GCNGC 2 cut(s) 24, 658
FspBI CTAG 2 cut(s) 306, 572
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 24, 658
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 267, 339
HapII CCGG 1 cut(s) 192
HgaI GACGC 2 cut(s) 184, 359
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 94, 898
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 2 cut(s) 132, 559
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 277, 443
Hpy166II GTNNAC 2 cut(s) 139, 434
Hpy188I TCNGA 5 cut(s) 36, 125, 152, 810, 920
Hpy188III TCNNGA 5 cut(s) 422, 512, 860, 886, 956
Hpy8I GTNNAC 2 cut(s) 139, 434
HpyAV CCTTC 4 cut(s) 53, 188, 877, 899
HpyCH4IV ACGT 5 cut(s) 85, 361, 603, 646, 673
HpyCH4V TGCA 7 cut(s) 251, 457, 535, 566, 583, 728, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 201, 725
HpyF3I CTNAG 2 cut(s) 234, 461
HpySE526I ACGT 5 cut(s) 85, 361, 603, 646, 673
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 94, 898
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 630
Kzo9I GATC 6 cut(s) 36, 108, 157, 298, 313, 832
LmnI GCTCC 2 cut(s) 209, 496
Lsp1109I GCAGC 2 cut(s) 35, 644
LweI GCATC 2 cut(s) 466, 853
MabI ACCWGGT 1 cut(s) 922
MaeI CTAG 2 cut(s) 306, 572
MaeII ACGT 5 cut(s) 85, 361, 603, 646, 673
MaeIII GTNAC 6 cut(s) 86, 196, 229, 283, 402, 674
MalI GATC 6 cut(s) 38, 110, 159, 300, 315, 834
MboI GATC 6 cut(s) 36, 108, 157, 298, 313, 832
MboII GAAGA 3 cut(s) 451, 500, 581
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 2 cut(s) 298, 313
MhlI GDGCHC 2 cut(s) 341, 963
MluCI AATT 9 cut(s) 258, 354, 385, 426, 486, 711, 842, 855, 974
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 3 cut(s) 130, 219, 723
MnlI CCTC 7 cut(s) 50, 66, 89, 235, 429, 646, 701
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 1 cut(s) 914
MseI TTAA 5 cut(s) 375, 384, 446, 468, 686
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 924
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 2 cut(s) 914, 916
MvaI CCWGG 1 cut(s) 924
MwoI GCNNNNNNNGC 3 cut(s) 171, 201, 725
NdeII GATC 6 cut(s) 36, 108, 157, 298, 313, 832
NlaIII CATG 2 cut(s) 94, 898
NlaIV GGNNCC 2 cut(s) 339, 628
NmuCI GTSAC 4 cut(s) 86, 196, 229, 283
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 1 cut(s) 898
PciI ACATGT 1 cut(s) 894
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PctI GAATGC 2 cut(s) 914, 916
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 1 cut(s) 559
PkrI GCNGC 2 cut(s) 25, 659
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Ppu21I YACGTR 2 cut(s) 647, 674
PscI ACATGT 1 cut(s) 894
Psp124BI GAGCTC 1 cut(s) 963
Psp6I CCWGG 1 cut(s) 922
PspGI CCWGG 1 cut(s) 922
PspN4I GGNNCC 2 cut(s) 339, 628
PspOMI GGGCCC 1 cut(s) 337
PspPI GGNCC 4 cut(s) 189, 266, 337, 338
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 2 cut(s) 298, 313
RsaI GTAC 3 cut(s) 140, 628, 755
RsaNI GTAC 3 cut(s) 139, 627, 754
SacI GAGCTC 1 cut(s) 963
SaqAI TTAA 5 cut(s) 375, 384, 446, 468, 686
SatI GCNGC 2 cut(s) 24, 658
Sau3AI GATC 6 cut(s) 36, 108, 157, 298, 313, 832
Sau96I GGNCC 4 cut(s) 189, 266, 337, 338
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 924
SduI GDGCHC 2 cut(s) 341, 963
SexAI ACCWGGT 1 cut(s) 922
SfaNI GCATC 2 cut(s) 466, 853
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 210, 956
SmoI CTYRAG 2 cut(s) 210, 956
SnaBI TACGTA 2 cut(s) 647, 674
Sse9I AATT 9 cut(s) 258, 354, 385, 426, 486, 711, 842, 855, 974
SsiI CCGC 3 cut(s) 165, 182, 556
SspMI CTAG 2 cut(s) 306, 572
SstI GAGCTC 1 cut(s) 963
StyD4I CCNGG 1 cut(s) 922
TaiI ACGT 5 cut(s) 88, 364, 606, 649, 676
TaqI TCGA 2 cut(s) 223, 651
TasI AATT 9 cut(s) 258, 354, 385, 426, 486, 711, 842, 855, 974
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 5 cut(s) 375, 384, 446, 468, 686
Tru9I TTAA 5 cut(s) 375, 384, 446, 468, 686
TscAI CASTG 2 cut(s) 238, 970
TseFI GTSAC 4 cut(s) 86, 196, 229, 283
TseI GCWGC 2 cut(s) 23, 657
Tsp45I GTSAC 4 cut(s) 86, 196, 229, 283
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 2 cut(s) 238, 970
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 4 cut(s) 486, 711, 855, 974
XceI RCATGY 1 cut(s) 898
XmnI GAANNNNTTC 1 cut(s) 914
XspI CTAG 2 cut(s) 306, 572
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.