AT5G61340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012489
Physical Location & Seq
Reverse (-)
24661679 .. 24663217
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61340.2

Sequence Viewer

Length: 981 bp
ATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGAAGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCCCTCCCTTTCTCCGCCGGTCTCCTCCTCTCTCAGCCTTTCTTCTCTTCTTCCTCTTCCACCCTTCACATGAGGCTTAACATGCTCTTCCGCGGAGCGGGTTTCTCTTCTTCTCATGACTTCTTCAACATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCTTTCTCCCTCACATTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAATCACTCTGCAGATTCCTCCTCTGTTTTCTACCTCCGGCTTCTCAAAACTTACGTTTGCAACTTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCTTAGCATACAATACCCTTGAAGCCTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCCTATCCTCAGCAATCATCTACTCAATTATCATCGCAAACGCCTTTGTCATCTCTAATCTAGCCTTGGTTTCATCACCTTCTTCTTCCTCGGGAGGATACACAAACATCCTCAAGGCGTGTCTTCTGATTCGCGGAAGAAATTCAACAGCAATGGCTCTTGCTCTGCCTACCAATCTCGGCTTAGCAGGAGTCGAAGCCTTGTTTCAGTACCGAGTCATGAGATCTTATTACAATGGAGACAGAGATATCATATCCATAGCTCTTGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTTGACACCATAGTCAACTTCCTCTTTTACCAGAGCTGCATCAAAAACGAGGAAGATCAAAATATCGGTAGAGAAGACGAGTATTCAATCAAGATCCAAATCAGCGAAACAGAGAACACAAAGATACACATCAAAGGATCAAAGAACTTGCAAGAAATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

36.4

Weight (kDa)

9.23

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61340 AT5G61340
fragaria_vesca FvH4_5g14500
malus_domestica MD06G1197900.v1.1 MD14G1205500.v1.1
prunus_persica Prupe.5G198800_v2.0.a1 Prupe.5G198800_v2.0.a1
pyrus_communis pycom06g17490 pycom14g17000
rosa_chinensis RchiOBHm_Chr7g0182161
rosa_laevigata RLG00000005145
rosa_multiflora Rmu_sc0000003.1_g000019
rosa_roxburghii Rroxscaffold_3G00271460
rosa_rugosa Rorug06G0445800
rosa_samantha Rh7AG048800 Rh7BG048700 Rh7CG050100 Rh7DG048000
rosa_wichuraiana Rw7G003980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 827
AccBSI CCGCTC 1 cut(s) 194
AccII CGCG 2 cut(s) 189, 642
AciI CCGC 7 cut(s) 84, 90, 111, 187, 189, 194, 642
AclWI GGATC 4 cut(s) 14, 27, 904, 961
AcsI RAATTY 1 cut(s) 649
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 229
AgsI TTSAA 6 cut(s) 223, 467, 486, 654, 776, 903
AluBI AGCT 4 cut(s) 311, 770, 791, 852
AluI AGCT 4 cut(s) 311, 770, 791, 852
Alw26I GTCTC 2 cut(s) 122, 741
AlwI GGATC 4 cut(s) 14, 27, 904, 961
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 86, 852
ApoI RAATTY 1 cut(s) 649
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
Asp700I GAANNNNTTC 1 cut(s) 649
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 70, 576
AvaI CYCGRG 1 cut(s) 598
BamHI GGATCC 1 cut(s) 19
BbsI GAAGAC 3 cut(s) 14, 623, 897
BbvCI CCTCAGC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 98, 839
BceAI ACGGC 1 cut(s) 77
BciVI GTATCC 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 122, 741
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 229
BfuI GTATCC 1 cut(s) 599
BglI GCCNNNNNGGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 731
BisI GCNGC 3 cut(s) 87, 90, 853
BlpI GCTNAGC 1 cut(s) 691
BlsI GCNGC 3 cut(s) 88, 91, 854
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 21, 781
BmsI GCATC 1 cut(s) 864
BpiI GAAGAC 3 cut(s) 14, 623, 897
Bpu10I CCTNAGC 1 cut(s) 517
Bpu1102I GCTNAGC 1 cut(s) 691
BpuEI CTTGAG 1 cut(s) 605
BsaBI GATNNNNATC 2 cut(s) 914, 944
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 4 cut(s) 93, 187, 573, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 666
Bse8I GATNNNNATC 2 cut(s) 914, 944
BseDI CCNNGG 4 cut(s) 93, 187, 573, 597
BseGI GGATG 1 cut(s) 615
BseJI GATNNNNATC 2 cut(s) 914, 944
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 143, 531
BseRI GAGGAG 3 cut(s) 110, 113, 346
BseXI GCAGC 2 cut(s) 98, 839
Bsh1236I CGCG 2 cut(s) 189, 642
BshFI GGCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 2 cut(s) 114, 373
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 122, 741
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 598
Bsp143I GATC 6 cut(s) 19, 30, 731, 871, 909, 953
Bsp1720I GCTNAGC 1 cut(s) 691
BspACI CCGC 7 cut(s) 84, 90, 111, 187, 189, 194, 642
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 142, 530
BspFNI CGCG 2 cut(s) 189, 642
BspHI TCATGA 3 cut(s) 33, 211, 726
BspLI GGNNCC 2 cut(s) 21, 781
BspMAI CTGCAG 1 cut(s) 349
BspPI GGATC 4 cut(s) 14, 27, 904, 961
BspQI GCTCTTC 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 93, 187, 573, 597
BssMI GATC 6 cut(s) 19, 30, 731, 871, 909, 953
BssT1I CCWWGG 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 7 cut(s) 148, 157, 188, 208, 279, 487, 812
BstAFI CTTAAG 1 cut(s) 229
BstDEI CTNAG 4 cut(s) 129, 448, 517, 691
BstDSI CCRYGG 2 cut(s) 93, 187
BstF5I GGATG 1 cut(s) 615
BstFNI CGCG 2 cut(s) 189, 642
BstKTI GATC 6 cut(s) 22, 33, 734, 874, 912, 956
BstMAI GTCTC 2 cut(s) 122, 741
BstMBI GATC 6 cut(s) 19, 30, 731, 871, 909, 953
BstMWI GCNNNNNNNGC 2 cut(s) 95, 178
BstNSI RCATGY 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 2 cut(s) 189, 642
BstV1I GCAGC 2 cut(s) 98, 839
BstV2I GAAGAC 3 cut(s) 14, 623, 897
BstX2I RGATCY 3 cut(s) 19, 731, 909
BstYI RGATCY 3 cut(s) 19, 731, 909
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 2 cut(s) 93, 187
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 615
CciI TCATGA 3 cut(s) 33, 211, 726
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 97
Cfr42I CCGCGG 1 cut(s) 190
Csp6I GTAC 1 cut(s) 718
CviAII CATG 5 cut(s) 34, 166, 178, 212, 727
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 4 cut(s) 129, 448, 517, 691
DpnI GATC 6 cut(s) 21, 32, 733, 873, 911, 955
DpnII GATC 6 cut(s) 19, 30, 731, 871, 909, 953
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
Eam1104I CTCTTC 7 cut(s) 148, 157, 188, 208, 279, 487, 812
EarI CTCTTC 7 cut(s) 148, 157, 188, 208, 279, 487, 812
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 573
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 757
Eco88I CYCGRG 1 cut(s) 598
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 5 cut(s) 37, 169, 181, 215, 730
FatI CATG 5 cut(s) 33, 165, 177, 211, 726
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 87, 90, 853
FokI GGATG 1 cut(s) 602
Fsp4HI GCNGC 3 cut(s) 87, 90, 853
FspBI CTAG 1 cut(s) 569
GluI GCNGC 3 cut(s) 87, 90, 853
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 114, 373
Hin1II CATG 5 cut(s) 37, 169, 181, 215, 730
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 5 cut(s) 350, 477, 637, 699, 723
HpaII CCGG 2 cut(s) 114, 373
HphI GGTGA 2 cut(s) 70, 576
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 1 cut(s) 636
Hpy188III TCNNGA 8 cut(s) 34, 212, 486, 600, 727, 773, 818, 907
Hpy8I GTNNAC 1 cut(s) 832
HpyAV CCTTC 6 cut(s) 33, 170, 419, 597, 770, 793
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 2 cut(s) 315, 390
HpyCH4V TGCA 5 cut(s) 347, 396, 419, 855, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 178
HpyF3I CTNAG 4 cut(s) 129, 448, 517, 691
HpySE526I ACGT 2 cut(s) 315, 390
Hsp92II CATG 5 cut(s) 37, 169, 181, 215, 730
KspI CCGCGG 1 cut(s) 190
Kzo9I GATC 6 cut(s) 19, 30, 731, 871, 909, 953
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 4 cut(s) 127, 386, 681, 860
Lsp1109I GCAGC 2 cut(s) 98, 839
LweI GCATC 1 cut(s) 864
MaeI CTAG 1 cut(s) 569
MaeII ACGT 2 cut(s) 315, 390
MaeIII GTNAC 1 cut(s) 76
MalI GATC 6 cut(s) 21, 32, 733, 873, 911, 955
MbiI CCGCTC 1 cut(s) 194
MboI GATC 6 cut(s) 19, 30, 731, 871, 909, 953
MflI RGATCY 3 cut(s) 19, 731, 909
MluCI AATT 3 cut(s) 45, 534, 649
MlyI GAGTC 2 cut(s) 708, 732
MroXI GAANNNNTTC 1 cut(s) 649
MseI TTAA 3 cut(s) 174, 230, 237
MspA1I CMGCKG 1 cut(s) 189
MspCI CTTAAG 1 cut(s) 229
MspI CCGG 2 cut(s) 114, 373
MvnI CGCG 2 cut(s) 189, 642
MwoI GCNNNNNNNGC 2 cut(s) 95, 178
NdeII GATC 6 cut(s) 19, 30, 731, 871, 909, 953
NlaIII CATG 5 cut(s) 37, 169, 181, 215, 730
NlaIV GGNNCC 2 cut(s) 21, 781
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 181
PagI TCATGA 3 cut(s) 33, 211, 726
PciSI GCTCTTC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 649
PfeI GAWTC 3 cut(s) 350, 477, 637
PkrI GCNGC 3 cut(s) 88, 91, 854
PleI GAGTC 2 cut(s) 707, 731
PpsI GAGTC 2 cut(s) 707, 731
PspN4I GGNNCC 2 cut(s) 21, 781
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 3 cut(s) 19, 731, 909
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
SacII CCGCGG 1 cut(s) 190
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 3 cut(s) 174, 230, 237
SatI GCNGC 3 cut(s) 87, 90, 853
Sau3AI GATC 6 cut(s) 19, 30, 731, 871, 909, 953
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 2 cut(s) 708, 732
SfaNI GCATC 1 cut(s) 864
SfcI CTRYAG 1 cut(s) 345
Sfr303I CCGCGG 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 229, 620
SmoI CTYRAG 2 cut(s) 229, 620
Sse9I AATT 3 cut(s) 45, 534, 649
SsiI CCGC 7 cut(s) 84, 90, 111, 187, 189, 194, 642
SspMI CTAG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 2 cut(s) 318, 393
TaqI TCGA 1 cut(s) 702
TasI AATT 3 cut(s) 45, 534, 649
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 3 cut(s) 350, 477, 637
Tru1I TTAA 3 cut(s) 174, 230, 237
Tru9I TTAA 3 cut(s) 174, 230, 237
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 86, 852
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 17, 570, 775
Vha464I CTTAAG 1 cut(s) 229
XapI RAATTY 1 cut(s) 649
XceI RCATGY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 649
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.