pycom06g17490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0012489
Physical Location & Seq
Forward (+)
21442035 .. 21443105
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17490.1

Sequence Viewer

Length: 990 bp
ATGGAAACAGCAGGCAAAATTCTCAGAAGATCAGTCCACATATTTCTTCTAAACTACCAATACTTCACCTCAACTGCTGCACTCATTGCCTTACCCTTCTCAGCCTCAGTTCTCGTCTCTCAAGCACTTCTTCCTTCAAGCTCCGCCCTCTTGGCCGCCGTCTATAACCGCCTCCACAGTCTTTTCGATGCGGCCGGCTTCCCTCCCTCCTTGGAATTCTTCACCATTCTCAACCACAAGCTCTCCCAAACCATCACCTCTTCAGTCTTCACATTCCCATTCTCCCTCACCTTCCTCCTCATAACCAAATCTTTTGTAATCCAAACTCTCAGCCGCCACCAGAAACTGAATTCCTCGTCGCACCCATCATTTCTTTCCACAATTTCTCTCTACACCCCACTCCTCCACACCCATGTTTACAACTCGTTTTTTATCCTCTCTGCCAATGCAACCGTCTTTTCTATCTTGTTCATCGCCTTCAATGTCCTCGAAGGATCCGGGTTCTCTTCTCCTAACATCCTCCTCTTCTTATCGGCATCTGGGGCAGTTTTGTACTCCATTGTTCTTGCCAATGCACTCATAATATGCAATCTTGCATTGGTTCTATCAGGTACACAAAAGAGTGGCGGCTACTTAGCAATTCTCAAGGCTTGTCTTTTGATCAGAGGAAGAACTTCAACTGCTCTCTCTCTTGCTCTGCCTGTCAGCTTAACCCTAGCTGCAGTTGAAGCATTGTTCCAATACCGCCTCGTACGAGCCTACCATTTCACAGGACAGCTCGGATCGATCGTGTTGTTTCCATGGCCATGGAGGGTGTTTTCATTGCTTATTTGTACTCAATTCTTCTGCAAGCCGAGTTCTCGAGGGATCGAATGCAGAGACGACGAAGAAAGTTGTGGAGATTTAAAGGCTGGAACCCTTCGAAGTTCAAACCAATCCAGTTTTAGTTCATTCCTTTTTCTTTTTTTTTTTTTAGAGGAAAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

36.2

Weight (kDa)

9.32

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61340 AT5G61340
fragaria_vesca FvH4_5g14500
malus_domestica MD06G1197900.v1.1 MD14G1205500.v1.1
prunus_persica Prupe.5G198800_v2.0.a1 Prupe.5G198800_v2.0.a1
pyrus_communis pycom06g17490 pycom14g17000
rosa_chinensis RchiOBHm_Chr7g0182161
rosa_laevigata RLG00000005145
rosa_multiflora Rmu_sc0000003.1_g000019
rosa_roxburghii Rroxscaffold_3G00271460
rosa_rugosa Rorug06G0445800
rosa_samantha Rh7AG048800 Rh7BG048700 Rh7CG050100 Rh7DG048000
rosa_wichuraiana Rw7G003980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 144, 156, 169, 191, 334, 627, 745
AclWI GGATC 4 cut(s) 489, 502, 790, 875
AcoI YGGCCR 3 cut(s) 153, 192, 803
AcsI RAATTY 3 cut(s) 18, 215, 349
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 4 cut(s) 554, 613, 753, 835
AgsI TTSAA 5 cut(s) 138, 481, 678, 728, 930
AluBI AGCT 5 cut(s) 141, 241, 708, 719, 778
AluI AGCT 5 cut(s) 141, 241, 708, 719, 778
Alw26I GTCTC 2 cut(s) 121, 873
AlwI GGATC 4 cut(s) 489, 502, 790, 875
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 3 cut(s) 153, 192, 803
ApeKI GCWGC 2 cut(s) 77, 719
ApoI RAATTY 3 cut(s) 18, 215, 349
Asp700I GAANNNNTTC 1 cut(s) 673
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 4 cut(s) 58, 214, 247, 280
AsuII TTCGAA 1 cut(s) 922
AvaI CYCGRG 1 cut(s) 861
BalI TGGCCA 1 cut(s) 805
BamHI GGATCC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 64, 706
BccI CCATC 2 cut(s) 260, 373
BceAI ACGGC 1 cut(s) 143
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 121, 873
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 1 cut(s) 720
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 6 cut(s) 78, 156, 192, 334, 628, 720
BlsI GCNGC 6 cut(s) 79, 157, 193, 335, 629, 721
Bme1390I CCNGG 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 861
BmiI GGNNCC 2 cut(s) 496, 916
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 178, 545
BpiI GAAGAC 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 922
BpuEI CTTGAG 2 cut(s) 105, 629
BpuMI CCSGG 1 cut(s) 499
Bsa29I ATCGAT 1 cut(s) 785
BsaJI CCNNGG 3 cut(s) 210, 800, 806
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 939
Bse3DI GCAATG 2 cut(s) 84, 821
BseCI ATCGAT 1 cut(s) 785
BseDI CCNNGG 3 cut(s) 210, 800, 806
BseGI GGATG 1 cut(s) 516
BseMI GCAATG 2 cut(s) 84, 821
BseMII CTCAG 4 cut(s) 37, 114, 120, 343
BseNI ACTGG 1 cut(s) 939
BseRI GAGGAG 3 cut(s) 287, 392, 512
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 64, 706
BsgI GTGCAG 1 cut(s) 63
Bsh1285I CGRYCG 2 cut(s) 195, 789
BshFI GGCC 3 cut(s) 155, 194, 805
BshVI ATCGAT 1 cut(s) 785
BsiEI CGRYCG 2 cut(s) 195, 789
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 2 cut(s) 195, 498
BsiWI CGTACG 1 cut(s) 751
BsmAI GTCTC 2 cut(s) 121, 873
BsmBI CGTCTC 2 cut(s) 121, 873
BsmI GAATGC 1 cut(s) 878
BsnI GGCC 3 cut(s) 155, 194, 805
BsoBI CYCGRG 1 cut(s) 861
Bsp119I TTCGAA 1 cut(s) 922
Bsp143I GATC 6 cut(s) 29, 494, 660, 782, 786, 867
Bsp19I CCATGG 2 cut(s) 800, 806
BspACI CCGC 7 cut(s) 144, 156, 169, 191, 334, 627, 745
BspANI GGCC 3 cut(s) 155, 194, 805
BspCNI CTCAG 4 cut(s) 36, 113, 119, 342
BspDI ATCGAT 1 cut(s) 785
BspLI GGNNCC 2 cut(s) 496, 916
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 4 cut(s) 489, 502, 790, 875
BspT104I TTCGAA 1 cut(s) 922
BsrDI GCAATG 2 cut(s) 84, 821
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 939
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 210, 800, 806
BssMI GATC 6 cut(s) 29, 494, 660, 782, 786, 867
BssT1I CCWWGG 3 cut(s) 210, 800, 806
Bst4CI ACNGT 2 cut(s) 179, 454
Bst6I CTCTTC 3 cut(s) 265, 511, 530
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 922
BstC8I GCNNGC 3 cut(s) 13, 196, 851
BstDEI CTNAG 5 cut(s) 23, 100, 106, 329, 634
BstDSI CCRYGG 2 cut(s) 800, 806
BstF5I GGATG 1 cut(s) 516
BstKTI GATC 6 cut(s) 32, 497, 663, 785, 789, 870
BstMAI GTCTC 2 cut(s) 121, 873
BstMBI GATC 6 cut(s) 29, 494, 660, 782, 786, 867
BstMCI CGRYCG 2 cut(s) 195, 789
BstMWI GCNNNNNNNGC 4 cut(s) 86, 152, 542, 728
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 64, 706
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 494
BstXI CCANNNNNNTGG 1 cut(s) 807
BstYI RGATCY 1 cut(s) 494
BstZI CGGCCG 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 785
BsuRI GGCC 3 cut(s) 155, 194, 805
BsuTUI ATCGAT 1 cut(s) 785
BtgI CCRYGG 2 cut(s) 800, 806
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 1 cut(s) 516
Cac8I GCNNGC 3 cut(s) 13, 196, 851
CaiI CAGNNNCTG 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 785
Csp6I GTAC 4 cut(s) 553, 612, 752, 834
CviAII CATG 3 cut(s) 413, 801, 807
CviQI GTAC 4 cut(s) 553, 612, 752, 834
DdeI CTNAG 5 cut(s) 23, 100, 106, 329, 634
DpnI GATC 6 cut(s) 31, 496, 662, 784, 788, 869
DpnII GATC 6 cut(s) 29, 494, 660, 782, 786, 867
DraI TTTAAA 1 cut(s) 906
EaeI YGGCCR 3 cut(s) 153, 192, 803
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 3 cut(s) 265, 511, 530
EarI CTCTTC 3 cut(s) 265, 511, 530
EciI GGCGGA 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 3 cut(s) 210, 800, 806
Eco52I CGGCCG 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 861
EcoRI GAATTC 2 cut(s) 215, 349
EcoT14I CCWWGG 3 cut(s) 210, 800, 806
ErhI CCWWGG 3 cut(s) 210, 800, 806
Esp3I CGTCTC 2 cut(s) 121, 873
FaeI CATG 3 cut(s) 416, 804, 810
FaiI YATR 9 cut(s) 41, 165, 302, 414, 581, 586, 802, 808, 988
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 3 cut(s) 412, 800, 806
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 6 cut(s) 78, 156, 192, 334, 628, 720
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 6 cut(s) 78, 156, 192, 334, 628, 720
FspBI CTAG 1 cut(s) 716
GluI GCNGC 6 cut(s) 78, 156, 192, 334, 628, 720
HaeIII GGCC 3 cut(s) 155, 194, 805
HapII CCGG 2 cut(s) 195, 498
Hin1II CATG 3 cut(s) 416, 804, 810
HpaII CCGG 2 cut(s) 195, 498
HphI GGTGA 4 cut(s) 58, 214, 247, 280
Hpy166II GTNNAC 3 cut(s) 37, 418, 614
Hpy188I TCNGA 3 cut(s) 26, 665, 782
Hpy188III TCNNGA 1 cut(s) 861
Hpy8I GTNNAC 3 cut(s) 37, 418, 614
Hpy99I CGWCG 2 cut(s) 361, 887
HpyAV CCTTC 6 cut(s) 106, 144, 301, 485, 487, 929
HpyCH4III ACNGT 2 cut(s) 179, 454
HpyCH4V TGCA 8 cut(s) 80, 449, 575, 588, 596, 722, 849, 876
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 152, 542, 728
HpyF3I CTNAG 5 cut(s) 23, 100, 106, 329, 634
Hsp92II CATG 3 cut(s) 416, 804, 810
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 6 cut(s) 29, 494, 660, 782, 786, 867
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 9 cut(s) 208, 353, 511, 525, 594, 714, 756, 897, 952
Lsp1109I GCAGC 2 cut(s) 64, 706
LweI GCATC 2 cut(s) 178, 545
MaeI CTAG 1 cut(s) 716
MalI GATC 6 cut(s) 31, 496, 662, 784, 788, 869
MboI GATC 6 cut(s) 29, 494, 660, 782, 786, 867
MflI RGATCY 1 cut(s) 494
MlsI TGGCCA 1 cut(s) 805
MluCI AATT 6 cut(s) 18, 215, 349, 381, 639, 839
MluNI TGGCCA 1 cut(s) 805
Mox20I TGGCCA 1 cut(s) 805
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 673
MscI TGGCCA 1 cut(s) 805
MseI TTAA 2 cut(s) 710, 905
MslI CAYNNNNRTG 2 cut(s) 411, 805
Msp20I TGGCCA 1 cut(s) 805
MspI CCGG 2 cut(s) 195, 498
MspR9I CCNGG 1 cut(s) 499
Mva1269I GAATGC 1 cut(s) 878
MwoI GCNNNNNNNGC 4 cut(s) 86, 152, 542, 728
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 499
NcoI CCATGG 2 cut(s) 800, 806
NdeII GATC 6 cut(s) 29, 494, 660, 782, 786, 867
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 3 cut(s) 416, 804, 810
NlaIV GGNNCC 2 cut(s) 496, 916
NmeAIII GCCGAG 1 cut(s) 879
NspV TTCGAA 1 cut(s) 922
PaeR7I CTCGAG 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 786
PctI GAATGC 1 cut(s) 878
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 673
Pfl23II CGTACG 1 cut(s) 751
PkrI GCNGC 6 cut(s) 79, 157, 193, 335, 629, 721
Ple19I CGATCG 1 cut(s) 789
PspLI CGTACG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 496, 916
PstI CTGCAG 1 cut(s) 724
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 494
PvuI CGATCG 1 cut(s) 789
RsaI GTAC 4 cut(s) 554, 613, 753, 835
RsaNI GTAC 4 cut(s) 553, 612, 752, 834
RseI CAYNNNNRTG 2 cut(s) 411, 805
SaqAI TTAA 2 cut(s) 710, 905
SatI GCNGC 6 cut(s) 78, 156, 192, 334, 628, 720
Sau3AI GATC 6 cut(s) 29, 494, 660, 782, 786, 867
ScrFI CCNGG 1 cut(s) 499
SetI ASST 9 cut(s) 71, 143, 243, 260, 293, 613, 710, 721, 780
SfaNI GCATC 2 cut(s) 178, 545
SfcI CTRYAG 1 cut(s) 720
Sfr274I CTCGAG 1 cut(s) 861
SfuI TTCGAA 1 cut(s) 922
SlaI CTCGAG 1 cut(s) 861
SmiMI CAYNNNNRTG 2 cut(s) 411, 805
SmlI CTYRAG 3 cut(s) 120, 644, 861
SmoI CTYRAG 3 cut(s) 120, 644, 861
Sse9I AATT 6 cut(s) 18, 215, 349, 381, 639, 839
SsiI CCGC 7 cut(s) 144, 156, 169, 191, 334, 627, 745
SspMI CTAG 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 3 cut(s) 210, 800, 806
TaaI ACNGT 2 cut(s) 179, 454
TaqI TCGA 6 cut(s) 186, 489, 785, 862, 870, 922
TasI AATT 6 cut(s) 18, 215, 349, 381, 639, 839
TatI WGTACW 2 cut(s) 552, 833
TauI GCSGC 4 cut(s) 158, 194, 336, 630
Tru1I TTAA 2 cut(s) 710, 905
Tru9I TTAA 2 cut(s) 710, 905
TseI GCWGC 2 cut(s) 77, 719
TspDTI ATGAA 3 cut(s) 460, 810, 939
XapI RAATTY 3 cut(s) 18, 215, 349
XhoI CTCGAG 1 cut(s) 861
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.