Rh7AG048800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
3377930 .. 3378304
375 bp
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UTR
Exon/CDS
Intron
Rh7AG048800.1

Sequence Viewer

Length: 375 bp
ATGGCATTGGTCTTATCAGGGACAGAGAAGAGTGGGGGTTACCTAACAATTCTCAAGGCTTGTTTAGTAATCAGAGGAAGAACTTCAACTGCTCTGTTTCTGGCTCTACCTGTCAGCTTGGGATTGGCTGCAATTGAGGCATTGTTCCAATACAGGGTTGTAAGGGCTTACCATTTTGAAGGAAAGCTTGGATCTTCAATGGTTTTGGAGGGAGTTTTCATTGCTTACTTGTACTCAATTCTTGTGGTTCTTGACACAATCGTCAGCTTCAAGTTCTTCAAAAGCTGCAAGACAAGTTCTTGGGTTGAATACACTGATGAAGAAAGTGGTGGATATACCAATTTGAAGACTGCTTTGATGAAGGAAGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.59

Weight (kDa)

8.55

Isoelectric Point (pI)

24.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012489)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AclWI GGATC 1 cut(s) 199
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 7 cut(s) 87, 179, 198, 271, 280, 308, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 4 cut(s) 117, 187, 267, 285
AluI AGCT 4 cut(s) 117, 187, 267, 285
AlwI GGATC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 128, 285
Asp700I GAANNNNTTC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 115, 272
BisI GCNGC 2 cut(s) 129, 286
BlsI GCNGC 2 cut(s) 130, 287
BpiI GAAGAC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 115, 272
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 191
BspHI TCATGA 1 cut(s) 371
BspPI GGATC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 219
BssMI GATC 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 38
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 115, 272
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 312
CciI TCATGA 1 cut(s) 371
Csp6I GTAC 1 cut(s) 232
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 1 cut(s) 372
CviJI RGCY 8 cut(s) 59, 104, 117, 128, 167, 187, 267, 285
CviKI_1 RGCY 8 cut(s) 59, 104, 117, 128, 167, 187, 267, 285
CviQI GTAC 1 cut(s) 232
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 38
FaeI CATG 1 cut(s) 375
FaiI YATR 2 cut(s) 336, 373
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 129, 286
Fsp4HI GCNGC 2 cut(s) 129, 286
GluI GCNGC 2 cut(s) 129, 286
Hin1II CATG 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 2 cut(s) 251, 372
HpyAV CCTTC 2 cut(s) 173, 355
HpyCH4V TGCA 2 cut(s) 131, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 375
Kzo9I GATC 1 cut(s) 191
LpnPI CCDG 4 cut(s) 3, 86, 123, 139
Lsp1109I GCAGC 2 cut(s) 115, 272
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 6 cut(s) 40, 90, 186, 268, 332, 358
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 191
MluCI AATT 4 cut(s) 48, 132, 237, 340
MnlI CCTC 3 cut(s) 68, 130, 202
MroXI GAANNNNTTC 1 cut(s) 82
MunI CAATTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 191
NlaIII CATG 1 cut(s) 375
PagI TCATGA 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 130, 287
PspEI GGTNACC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SatI GCNGC 2 cut(s) 129, 286
Sau3AI GATC 1 cut(s) 191
SetI ASST 6 cut(s) 45, 112, 119, 189, 269, 287
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 4 cut(s) 48, 132, 237, 340
TasI AATT 4 cut(s) 48, 132, 237, 340
TatI WGTACW 1 cut(s) 231
TscAI CASTG 1 cut(s) 319
TseI GCWGC 2 cut(s) 128, 285
TspDTI ATGAA 4 cut(s) 208, 333, 360, 374
TspRI CASTG 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.