Prupe.5G198800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012489
Physical Location & Seq
Forward (+)
16017790 .. 16019803
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G198800.1

Sequence Viewer

Length: 1020 bp
ATGCAAGAAGACCACCCAAGAATTTCAATGGCAAAAGCAGGCAAGATTCTGAGAAAATCAGTTCATACTTTTCTTCAGAACTACCAATTCTTCACCTCAATTGTGGCACTCATTGCTTTACCCTTCTCAGCTTCAGTTCTCATCTCTCAAGCATTGGTTCCTTCAAGCTCTTCTCTTTTGCCCACCATTTACAACCGCCTTCAGAGTCTTTTTGATGCTGCAGGCTTTCCTCCCTCTTCAGAATTCTTCTCAATTCTCAACCACAAGCTTTCCCAAACAATCTCTTCCTCAATCTTCACCATACCATTCACCCTCACCTTCTTGCTCATAACCAAAGCCTCTGTGATTCAATATCTCAATCACCGAAAGCCAACAACTTTCTCATCACACCCTTCTTTTTCTTCTGTCATTTCTCTCTACATCCCACTCCTCCACACCCATATTTTCAACTCATTCTTGATCCTCTCTGCTAATGCAACCGTGTTTTCTCTGCTATTCATTGCCTTCAATTTTCTTGAAGGATTTGGGTTCTCGTCTCCCAACACCCTCCTCTTCTTATCAGCATCTGGGGCTGTTCTTTATTCTATAGTTCTTGCCAATGCTCTCATAATATGCAACTTGTCATTGGTTTTATCAGGGACAGAGAGGAGTGGTGGCTACTTGGCAATTCTCAAGGCTTGTATTTTGATAAGAGGAAGAACTGCAACTGCTTTGTCTCTGGCTCTGCCTGTCAACTTGGCCCTGGCTGCAATCGAAGCATTGTTCCAATACCGGGTTGTAAGAGCTTGTCATTTTGCAGGAAAGCTGGGATCTTCCATGGCTTTAGAGGGGCTTTTGATTGCTTATTTGTACTCAGTTCTTGTTGTTCTTGACACAATTGTGAGCTTTATGTTCTTTAAAAGCTGCAAGCCAAGTTCTTGGGCTGATCAAGAAGGTAAACACTCTTGTGGGATCGAATACAGAGACGAAGAAAGTTGTGGTGGCTATGGAAATTTGAAGACTCTGAAAGAGCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

37.01

Weight (kDa)

9.1

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61340 AT5G61340
fragaria_vesca FvH4_5g14500
malus_domestica MD06G1197900.v1.1 MD14G1205500.v1.1
prunus_persica Prupe.5G198800_v2.0.a1 Prupe.5G198800_v2.0.a1
pyrus_communis pycom06g17490 pycom14g17000
rosa_chinensis RchiOBHm_Chr7g0182161
rosa_laevigata RLG00000005145
rosa_multiflora Rmu_sc0000003.1_g000019
rosa_roxburghii Rroxscaffold_3G00271460
rosa_rugosa Rorug06G0445800
rosa_samantha Rh7AG048800 Rh7BG048700 Rh7CG050100 Rh7DG048000
rosa_wichuraiana Rw7G003980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 196
AclWI GGATC 3 cut(s) 454, 817, 959
AcsI RAATTY 3 cut(s) 21, 242, 991
AcuI CTGAAG 4 cut(s) 59, 117, 185, 222
AfaI GTAC 1 cut(s) 851
AfiI CCNNNNNNNGG 1 cut(s) 772
AgsI TTSAA 7 cut(s) 27, 165, 350, 448, 508, 518, 997
AjnI CCWGG 1 cut(s) 741
AleI CACNNNNGTG 2 cut(s) 878, 945
AluBI AGCT 8 cut(s) 131, 168, 268, 785, 805, 885, 903, 1012
AluI AGCT 8 cut(s) 131, 168, 268, 785, 805, 885, 903, 1012
Alw26I GTCTC 3 cut(s) 540, 720, 957
AlwI GGATC 3 cut(s) 454, 817, 959
AlwNI CAGNNNCTG 1 cut(s) 566
AoxI GGCC 1 cut(s) 738
ApeKI GCWGC 3 cut(s) 218, 746, 903
ApoI RAATTY 3 cut(s) 21, 242, 991
AspS9I GGNCC 1 cut(s) 739
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 5 cut(s) 85, 289, 301, 307, 353
BbsI GAAGAC 2 cut(s) 15, 1004
BbvI GCAGC 3 cut(s) 205, 733, 890
BciT130I CCWGG 1 cut(s) 743
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 3 cut(s) 540, 720, 957
BfmI CTRYAG 2 cut(s) 219, 585
BisI GCNGC 3 cut(s) 219, 747, 904
BlsI GCNGC 3 cut(s) 220, 748, 905
Bme1390I CCNGG 2 cut(s) 743, 773
BmgT120I GGNCC 1 cut(s) 739
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 743, 773
BmsI GCATC 2 cut(s) 205, 572
BpiI GAAGAC 2 cut(s) 15, 1004
BpuEI CTTGAG 2 cut(s) 132, 656
BpuMI CCSGG 1 cut(s) 773
BsaJI CCNNGG 2 cut(s) 741, 816
Bsc4I CCNNNNNNNGG 1 cut(s) 772
Bse3DI GCAATG 2 cut(s) 111, 498
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 2 cut(s) 741, 816
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 772
BseMI GCAATG 2 cut(s) 111, 498
BseMII CTCAG 3 cut(s) 41, 141, 867
BseRI GAGGAG 3 cut(s) 419, 539, 661
BseXI GCAGC 3 cut(s) 205, 733, 890
BseYI CCCAGC 1 cut(s) 805
BshFI GGCC 1 cut(s) 740
BsiSI CCGG 1 cut(s) 772
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 1 cut(s) 772
BsmAI GTCTC 3 cut(s) 540, 720, 957
BsmBI CGTCTC 2 cut(s) 540, 957
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 1 cut(s) 740
Bsp143I GATC 4 cut(s) 459, 809, 925, 951
Bsp19I CCATGG 1 cut(s) 816
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 740
BspCNI CTCAG 3 cut(s) 42, 140, 866
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 3 cut(s) 454, 817, 959
BspQI GCTCTTC 1 cut(s) 175
BsrDI GCAATG 2 cut(s) 111, 498
BssECI CCNNGG 2 cut(s) 741, 816
BssMI GATC 4 cut(s) 459, 809, 925, 951
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 4 cut(s) 175, 241, 289, 557
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 40, 223, 908
BstDEI CTNAG 3 cut(s) 50, 127, 853
BstDSI CCRYGG 1 cut(s) 816
BstF5I GGATG 1 cut(s) 420
BstKTI GATC 4 cut(s) 462, 812, 928, 954
BstMAI GTCTC 3 cut(s) 540, 720, 957
BstMBI GATC 4 cut(s) 459, 809, 925, 951
BstMWI GCNNNNNNNGC 4 cut(s) 113, 569, 746, 755
BstNI CCWGG 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 741, 771
BstSFI CTRYAG 2 cut(s) 219, 585
BstV1I GCAGC 3 cut(s) 205, 733, 890
BstV2I GAAGAC 2 cut(s) 15, 1004
BstX2I RGATCY 1 cut(s) 809
BstXI CCANNNNNNTGG 1 cut(s) 918
BstYI RGATCY 1 cut(s) 809
BsuRI GGCC 1 cut(s) 740
BtgI CCRYGG 1 cut(s) 816
BtsCI GGATG 1 cut(s) 420
Cac8I GCNNGC 3 cut(s) 40, 223, 908
CaiI CAGNNNCTG 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 739
Csp6I GTAC 1 cut(s) 850
CviAII CATG 2 cut(s) 817, 1017
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 3 cut(s) 50, 127, 853
DpnI GATC 4 cut(s) 461, 811, 927, 953
DpnII GATC 4 cut(s) 459, 809, 925, 951
DraI TTTAAA 1 cut(s) 898
Eam1104I CTCTTC 4 cut(s) 175, 241, 289, 557
EarI CTCTTC 4 cut(s) 175, 241, 289, 557
Eco130I CCWWGG 1 cut(s) 816
Eco57I CTGAAG 4 cut(s) 59, 117, 185, 222
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 741
EcoT14I CCWWGG 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 816
Esp3I CGTCTC 2 cut(s) 540, 957
FaeI CATG 2 cut(s) 820, 1020
FaqI GGGAC 1 cut(s) 652
FatI CATG 2 cut(s) 816, 1016
FbaI TGATCA 1 cut(s) 925
Fnu4HI GCNGC 3 cut(s) 219, 747, 904
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 3 cut(s) 219, 747, 904
GluI GCNGC 3 cut(s) 219, 747, 904
GsaI CCCAGC 1 cut(s) 809
HaeIII GGCC 1 cut(s) 740
HapII CCGG 1 cut(s) 772
Hin1II CATG 2 cut(s) 820, 1020
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 4 cut(s) 46, 205, 346, 1000
HpaII CCGG 1 cut(s) 772
HphI GGTGA 5 cut(s) 85, 289, 301, 307, 353
Hpy166II GTNNAC 2 cut(s) 733, 938
Hpy188I TCNGA 5 cut(s) 51, 78, 204, 241, 1005
Hpy188III TCNNGA 4 cut(s) 457, 515, 869, 929
Hpy8I GTNNAC 2 cut(s) 733, 938
HpyAV CCTTC 8 cut(s) 133, 171, 209, 328, 402, 512, 514, 926
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4V TGCA 8 cut(s) 4, 221, 476, 615, 704, 749, 797, 906
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 569, 746, 755
HpyF3I CTNAG 3 cut(s) 50, 127, 853
Hsp92II CATG 2 cut(s) 820, 1020
Ksp22I TGATCA 1 cut(s) 925
Kzo9I GATC 4 cut(s) 459, 809, 925, 951
LguI GCTCTTC 1 cut(s) 175
Lsp1109I GCAGC 3 cut(s) 205, 733, 890
LweI GCATC 2 cut(s) 205, 572
MalI GATC 4 cut(s) 461, 811, 927, 953
MboI GATC 4 cut(s) 459, 809, 925, 951
MfeI CAATTG 2 cut(s) 99, 876
MflI RGATCY 1 cut(s) 809
MluCI AATT 9 cut(s) 21, 86, 99, 242, 252, 508, 666, 876, 991
MlyI GAGTC 2 cut(s) 214, 994
MseI TTAA 1 cut(s) 897
MslI CAYNNNNRTG 2 cut(s) 878, 945
MspI CCGG 1 cut(s) 772
MspR9I CCNGG 2 cut(s) 743, 773
MunI CAATTG 2 cut(s) 99, 876
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 4 cut(s) 113, 569, 746, 755
NciI CCSGG 1 cut(s) 773
NcoI CCATGG 1 cut(s) 816
NdeII GATC 4 cut(s) 459, 809, 925, 951
NlaIII CATG 2 cut(s) 820, 1020
NlaIV GGNNCC 1 cut(s) 159
OliI CACNNNNGTG 2 cut(s) 878, 945
PciSI GCTCTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 46, 346
PkrI GCNGC 3 cut(s) 220, 748, 905
PleI GAGTC 2 cut(s) 213, 994
PpsI GAGTC 2 cut(s) 213, 994
Psp6I CCWGG 1 cut(s) 741
PspFI CCCAGC 1 cut(s) 805
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 739
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 1 cut(s) 809
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
RseI CAYNNNNRTG 2 cut(s) 878, 945
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 897
SatI GCNGC 3 cut(s) 219, 747, 904
Sau3AI GATC 4 cut(s) 459, 809, 925, 951
Sau96I GGNCC 1 cut(s) 739
SchI GAGTC 2 cut(s) 214, 994
ScrFI CCNGG 2 cut(s) 743, 773
SfaNI GCATC 2 cut(s) 205, 572
SfcI CTRYAG 2 cut(s) 219, 585
SmiMI CAYNNNNRTG 2 cut(s) 878, 945
SmlI CTYRAG 2 cut(s) 147, 671
SmoI CTYRAG 2 cut(s) 147, 671
Sse9I AATT 9 cut(s) 21, 86, 99, 242, 252, 508, 666, 876, 991
SsiI CCGC 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 741, 771
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 1 cut(s) 481
TaqI TCGA 2 cut(s) 753, 954
TasI AATT 9 cut(s) 21, 86, 99, 242, 252, 508, 666, 876, 991
TatI WGTACW 1 cut(s) 849
TfiI GAWTC 2 cut(s) 46, 346
Tru1I TTAA 1 cut(s) 897
Tru9I TTAA 1 cut(s) 897
TseI GCWGC 3 cut(s) 218, 746, 903
TspDTI ATGAA 2 cut(s) 53, 487
XapI RAATTY 3 cut(s) 21, 242, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.