MD06G1197900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012489
Physical Location & Seq
Forward (+)
33180172 .. 33181131
960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1197900.v1.1.491

Sequence Viewer

Length: 960 bp
ATGGAAACAGCAGGCAAAATTCTCAGAAGATCAGTCCACACATTTCTTCTAAACTACCAATACTTCACCTCAACTGCTGCACTCATTGCCTTACCCTTCTCAGCCTCAGTTCTCATCTCTCAAGCACTTCTTCCTTCAAGCTCCGCCCTCTTGGCCGCCGTCTACAACCGCCTCCACAGTCTTTTCAACGCGGCTGGCTTCCCTCCCTCCTTGGAATTCTTCAACATTCTCAACCACAAGCTCTCCCAAACCATCACCTCCTCAGTCTTCACATTCCCATTCTCCCTCACCTTCCTCCTCATAACCAAATCTTTTGTAATCCAAACTCTCAGCCGCCACCAGAAACCGAATTCCTCATCGCACCCATCATTTCTTTCCACAATTTCTCTCTACACCCCACTCCTCCACACCCATGTTTACAACTCGTTTTTTATCATCTCTGCCAATGCAACCGTCTTTTCTATCTTGTTCATCGCCTTCAATGTCCTCGAAGGATCCGGGTTCTCTTCTCCGAACACCCTCCTCTTCTTATCGGCATCTGGGGCAGTTTTGTACTCCATTGTTCTTGCCAATGCACTCATAATATGCAATCTTGCATTGGTTCTATCAGGTACACAAAATAGTGGCGGCTACTTGGCAATTCTCAAGGCTTGTCTTTTAATCAGAGGAAGAACTTCAACTGCTCTCTCTCTTGCTTTGCCTGTCAGCTTAACCCTAGCTGCAGTTGAAGCATTGTTCCAATACCGCCTCGTACGAGCCTGCCATTTCACAGGACAGCTCGGATCTTCCATGGCCATGGAGGGTGTTTTCATTGCTTATTTGTACTCAATTCTTGTTGTTCTTGATACAACTGTGAGCTTTTTGTTCTTGCAAAGCTGCAAGCCGAGTTCTCGAGGGATCGAATACAGAGACGACGAAGAAAGTTGTGGAGATTTGAAGGCTGTCAAAGTGCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

34.61

Weight (kDa)

9.11

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61340 AT5G61340
fragaria_vesca FvH4_5g14500
malus_domestica MD06G1197900.v1.1 MD14G1205500.v1.1
prunus_persica Prupe.5G198800_v2.0.a1 Prupe.5G198800_v2.0.a1
pyrus_communis pycom06g17490 pycom14g17000
rosa_chinensis RchiOBHm_Chr7g0182161
rosa_laevigata RLG00000005145
rosa_multiflora Rmu_sc0000003.1_g000019
rosa_roxburghii Rroxscaffold_3G00271460
rosa_rugosa Rorug06G0445800
rosa_samantha Rh7AG048800 Rh7BG048700 Rh7CG050100 Rh7DG048000
rosa_wichuraiana Rw7G003980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 191
AciI CCGC 7 cut(s) 144, 156, 169, 191, 334, 627, 745
AclWI GGATC 4 cut(s) 489, 502, 790, 905
AcoI YGGCCR 2 cut(s) 153, 792
AcsI RAATTY 3 cut(s) 18, 215, 349
AfaI GTAC 4 cut(s) 554, 613, 753, 824
AgsI TTSAA 7 cut(s) 138, 187, 223, 481, 678, 728, 937
AluBI AGCT 7 cut(s) 141, 241, 708, 719, 778, 858, 876
AluI AGCT 7 cut(s) 141, 241, 708, 719, 778, 858, 876
Alw26I GTCTC 1 cut(s) 903
AlwI GGATC 4 cut(s) 489, 502, 790, 905
Ama87I CYCGRG 1 cut(s) 891
AoxI GGCC 2 cut(s) 153, 792
ApeKI GCWGC 3 cut(s) 77, 719, 876
ApoI RAATTY 3 cut(s) 18, 215, 349
Asp700I GAANNNNTTC 1 cut(s) 673
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 3 cut(s) 58, 247, 280
AvaI CYCGRG 1 cut(s) 891
BaeI ACNNNNGTAYC 2 cut(s) 837, 870
BalI TGGCCA 1 cut(s) 794
BamHI GGATCC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 64, 706, 863
BccI CCATC 2 cut(s) 260, 373
BceAI ACGGC 1 cut(s) 143
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 903
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 1 cut(s) 720
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 7 cut(s) 78, 156, 192, 334, 628, 720, 877
BlsI GCNGC 7 cut(s) 79, 157, 193, 335, 629, 721, 878
Bme1390I CCNGG 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 891
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 1 cut(s) 545
BpiI GAAGAC 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 105, 629
BpuMI CCSGG 1 cut(s) 499
BsaJI CCNNGG 3 cut(s) 210, 789, 795
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse3DI GCAATG 2 cut(s) 84, 810
BseDI CCNNGG 3 cut(s) 210, 789, 795
BseMI GCAATG 2 cut(s) 84, 810
BseMII CTCAG 5 cut(s) 37, 114, 120, 276, 343
BseRI GAGGAG 4 cut(s) 250, 287, 392, 512
BseXI GCAGC 3 cut(s) 64, 706, 863
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 155, 794
BsiHKCI CYCGRG 1 cut(s) 891
BsiSI CCGG 1 cut(s) 498
BsiWI CGTACG 1 cut(s) 751
BsmAI GTCTC 1 cut(s) 903
BsmBI CGTCTC 1 cut(s) 903
BsnI GGCC 2 cut(s) 155, 794
BsoBI CYCGRG 1 cut(s) 891
Bsp143I GATC 4 cut(s) 29, 494, 782, 897
Bsp19I CCATGG 2 cut(s) 789, 795
BspACI CCGC 7 cut(s) 144, 156, 169, 191, 334, 627, 745
BspANI GGCC 2 cut(s) 155, 794
BspCNI CTCAG 5 cut(s) 36, 113, 119, 275, 342
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 496
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 4 cut(s) 489, 502, 790, 905
BsrDI GCAATG 2 cut(s) 84, 810
BssECI CCNNGG 3 cut(s) 210, 789, 795
BssMI GATC 4 cut(s) 29, 494, 782, 897
BssT1I CCWWGG 3 cut(s) 210, 789, 795
Bst4CI ACNGT 3 cut(s) 179, 454, 853
Bst6I CTCTTC 2 cut(s) 511, 530
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 4 cut(s) 13, 196, 760, 881
BstDEI CTNAG 5 cut(s) 23, 100, 106, 262, 329
BstDSI CCRYGG 2 cut(s) 789, 795
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 4 cut(s) 32, 497, 785, 900
BstMAI GTCTC 1 cut(s) 903
BstMBI GATC 4 cut(s) 29, 494, 782, 897
BstMWI GCNNNNNNNGC 4 cut(s) 86, 152, 542, 728
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 64, 706, 863
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 494, 782
BstXI CCANNNNNNTGG 1 cut(s) 796
BstYI RGATCY 2 cut(s) 494, 782
BsuRI GGCC 2 cut(s) 155, 794
BtgI CCRYGG 2 cut(s) 789, 795
BtgZI GCGATG 2 cut(s) 342, 457
Cac8I GCNNGC 4 cut(s) 13, 196, 760, 881
Csp6I GTAC 4 cut(s) 553, 612, 752, 823
CviAII CATG 4 cut(s) 413, 790, 796, 957
CviQI GTAC 4 cut(s) 553, 612, 752, 823
DdeI CTNAG 5 cut(s) 23, 100, 106, 262, 329
DpnI GATC 4 cut(s) 31, 496, 784, 899
DpnII GATC 4 cut(s) 29, 494, 782, 897
EaeI YGGCCR 2 cut(s) 153, 792
Eam1104I CTCTTC 2 cut(s) 511, 530
EarI CTCTTC 2 cut(s) 511, 530
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 3 cut(s) 210, 789, 795
Eco88I CYCGRG 1 cut(s) 891
EcoRI GAATTC 2 cut(s) 215, 349
EcoT14I CCWWGG 3 cut(s) 210, 789, 795
ErhI CCWWGG 3 cut(s) 210, 789, 795
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 4 cut(s) 416, 793, 799, 960
FaiI YATR 7 cut(s) 302, 414, 581, 586, 791, 797, 958
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 4 cut(s) 412, 789, 795, 956
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 7 cut(s) 78, 156, 192, 334, 628, 720, 877
Fsp4HI GCNGC 7 cut(s) 78, 156, 192, 334, 628, 720, 877
FspBI CTAG 1 cut(s) 716
GluI GCNGC 7 cut(s) 78, 156, 192, 334, 628, 720, 877
HaeIII GGCC 2 cut(s) 155, 794
HapII CCGG 1 cut(s) 498
Hin1II CATG 4 cut(s) 416, 793, 799, 960
HpaII CCGG 1 cut(s) 498
HphI GGTGA 3 cut(s) 58, 247, 280
Hpy166II GTNNAC 4 cut(s) 37, 163, 418, 614
Hpy188I TCNGA 4 cut(s) 26, 513, 665, 782
Hpy188III TCNNGA 2 cut(s) 842, 891
Hpy8I GTNNAC 4 cut(s) 37, 163, 418, 614
Hpy99I CGWCG 1 cut(s) 917
HpyAV CCTTC 6 cut(s) 106, 144, 301, 485, 487, 931
HpyCH4III ACNGT 3 cut(s) 179, 454, 853
HpyCH4V TGCA 8 cut(s) 80, 449, 575, 588, 596, 722, 871, 879
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 152, 542, 728
HpyF3I CTNAG 5 cut(s) 23, 100, 106, 262, 329
Hsp92II CATG 4 cut(s) 416, 793, 799, 960
Kzo9I GATC 4 cut(s) 29, 494, 782, 897
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 8 cut(s) 180, 353, 511, 525, 594, 714, 756, 772
Lsp1109I GCAGC 3 cut(s) 64, 706, 863
LweI GCATC 1 cut(s) 545
MaeI CTAG 1 cut(s) 716
MalI GATC 4 cut(s) 31, 496, 784, 899
MboI GATC 4 cut(s) 29, 494, 782, 897
MflI RGATCY 2 cut(s) 494, 782
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 6 cut(s) 18, 215, 349, 381, 639, 828
MluNI TGGCCA 1 cut(s) 794
Mox20I TGGCCA 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 673
MscI TGGCCA 1 cut(s) 794
MseI TTAA 2 cut(s) 659, 710
MslI CAYNNNNRTG 2 cut(s) 411, 794
Msp20I TGGCCA 1 cut(s) 794
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 499
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 86, 152, 542, 728
NciI CCSGG 1 cut(s) 499
NcoI CCATGG 2 cut(s) 789, 795
NdeII GATC 4 cut(s) 29, 494, 782, 897
NlaIII CATG 4 cut(s) 416, 793, 799, 960
NlaIV GGNNCC 1 cut(s) 496
NmeAIII GCCGAG 1 cut(s) 909
PaeR7I CTCGAG 1 cut(s) 891
PdmI GAANNNNTTC 1 cut(s) 673
Pfl23II CGTACG 1 cut(s) 751
PkrI GCNGC 7 cut(s) 79, 157, 193, 335, 629, 721, 878
PspLI CGTACG 1 cut(s) 751
PspN4I GGNNCC 1 cut(s) 496
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 2 cut(s) 494, 782
RsaI GTAC 4 cut(s) 554, 613, 753, 824
RsaNI GTAC 4 cut(s) 553, 612, 752, 823
RseI CAYNNNNRTG 2 cut(s) 411, 794
SaqAI TTAA 2 cut(s) 659, 710
SatI GCNGC 7 cut(s) 78, 156, 192, 334, 628, 720, 877
Sau3AI GATC 4 cut(s) 29, 494, 782, 897
ScrFI CCNGG 1 cut(s) 499
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 1 cut(s) 720
Sfr274I CTCGAG 1 cut(s) 891
SlaI CTCGAG 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 411, 794
SmlI CTYRAG 3 cut(s) 120, 644, 891
SmoI CTYRAG 3 cut(s) 120, 644, 891
Sse9I AATT 6 cut(s) 18, 215, 349, 381, 639, 828
SsiI CCGC 7 cut(s) 144, 156, 169, 191, 334, 627, 745
SspMI CTAG 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 3 cut(s) 210, 789, 795
TaaI ACNGT 3 cut(s) 179, 454, 853
TaqI TCGA 3 cut(s) 489, 892, 900
TasI AATT 6 cut(s) 18, 215, 349, 381, 639, 828
TatI WGTACW 2 cut(s) 552, 822
TauI GCSGC 4 cut(s) 158, 194, 336, 630
Tru1I TTAA 2 cut(s) 659, 710
Tru9I TTAA 2 cut(s) 659, 710
TseI GCWGC 3 cut(s) 77, 719, 876
TspDTI ATGAA 2 cut(s) 460, 799
XapI RAATTY 3 cut(s) 18, 215, 349
XhoI CTCGAG 1 cut(s) 891
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.