AT5G61410

Ribulose-phosphate 3-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010094
Physical Location & Seq
Reverse (-)
24683606 .. 24686217
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61410.1

Sequence Viewer

Length: 846 bp
ATGTCAACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCCAGGTCAATGGGTTTGGTCTTAGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCCTTTTCTTTCTCCAGAAGGAGAACTCATGGAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTTCGAAAAGTGATATCATTGTTTCTCCCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCGAGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACGGTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGACAGATCTTCCTTTGGATGTTCATCTGATGATAGTGGAACCCGAGCAGAGAGTACCGGATTTCATCAAAGCAGGTGCAGATATTGTCAGTGTACATTGTGAACAGCAATCCACCATCCATTTGCATCGTACCGTCAATCAAATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTTCTAAACCCTGGAACCCCATTGAGTGCAATAGAATATGTCTTGGATATGGTGGATCTGGTCTTGATCATGTCGGTCAACCCTGGTTTTGGTGGACAGAGCTTTATTGAAAGCCAAGTAAAGAAAATCTCGGACTTGAGGAAAATGTGTGCAGAGAAGGGAGTAAACCCATGGATTGAAGTTGATGGTGGTGTCACTCCAGCGAATGCGTACAAGGTTATTGAGGCTGGAGCAAATGCTCTAGTGGCTGGATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGCTATAAAAGGAATTAAGGCCAGCAAACGACCAGCAGCTGTAGCTGTGTAA

Protein Analysis

281

Amino Acids

30.01

Weight (kDa)

8.24

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribul_P_3_epim PF00834 60 - 258 4.6e-89 Ribulose-phosphate 3 epimerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 3 cut(s) 214, 236, 401
AciI CCGC 2 cut(s) 12, 15
AclWI GGATC 2 cut(s) 573, 769
AfaI GTAC 4 cut(s) 393, 432, 469, 722
AfiI CCNNNNNNNGG 2 cut(s) 144, 599
AgsI TTSAA 2 cut(s) 620, 689
AjnI CCWGG 3 cut(s) 39, 520, 592
AluBI AGCT 8 cut(s) 489, 503, 612, 767, 779, 797, 833, 839
AluI AGCT 8 cut(s) 489, 503, 612, 767, 779, 797, 833, 839
AlwI GGATC 2 cut(s) 573, 769
AlwNI CAGNNNCTG 1 cut(s) 833
Ama87I CYCGRG 2 cut(s) 144, 380
AoxI GGCC 3 cut(s) 62, 135, 813
ApeKI GCWGC 1 cut(s) 830
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 308
AsuII TTCGAA 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 144, 380
AvaII GGWCC 1 cut(s) 308
BauI CACGAG 1 cut(s) 314
BbvI GCAGC 1 cut(s) 842
BccI CCATC 2 cut(s) 461, 689
BciT130I CCWGG 3 cut(s) 41, 522, 594
BclI TGATCA 1 cut(s) 576
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 1 cut(s) 834
BfuAI ACCTGC 3 cut(s) 214, 236, 401
BglII AGATCT 1 cut(s) 343
BisI GCNGC 2 cut(s) 15, 831
BlsI GCNGC 2 cut(s) 16, 832
Bme1390I CCNGG 3 cut(s) 41, 522, 594
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 2 cut(s) 144, 380
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 378, 526
BmrFI CCNGG 3 cut(s) 41, 522, 594
BmsI GCATC 2 cut(s) 313, 472
BpmI CTGGAG 4 cut(s) 91, 525, 693, 759
Bpu10I CCTNAGC 2 cut(s) 490, 780
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 39, 520, 592, 680
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 599
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 3 cut(s) 41, 522, 594
BseDI CCNNGG 4 cut(s) 39, 520, 592, 680
BseGI GGATG 2 cut(s) 361, 453
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 144, 599
BseXI GCAGC 1 cut(s) 842
BsgI GTGCAG 2 cut(s) 435, 681
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 3 cut(s) 64, 137, 815
BsiEI CGRYCG 1 cut(s) 283
BsiHKCI CYCGRG 2 cut(s) 144, 380
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 144, 599
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 3 cut(s) 64, 137, 815
BsoBI CYCGRG 2 cut(s) 144, 380
Bsp119I TTCGAA 1 cut(s) 161
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 4 cut(s) 343, 565, 576, 761
Bsp19I CCATGG 1 cut(s) 680
BspACI CCGC 2 cut(s) 12, 15
BspANI GGCC 3 cut(s) 64, 137, 815
BspLI GGNNCC 2 cut(s) 378, 526
BspMI ACCTGC 3 cut(s) 214, 236, 401
BspPI GGATC 2 cut(s) 573, 769
BspT104I TTCGAA 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 430
BssECI CCNNGG 4 cut(s) 39, 520, 592, 680
BssMI GATC 4 cut(s) 343, 565, 576, 761
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 680
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 3 cut(s) 41, 522, 594
Bst4CI ACNGT 2 cut(s) 281, 472
BstAUI TGTACA 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 221, 817
BstDEI CTNAG 3 cut(s) 59, 490, 780
BstDSI CCRYGG 1 cut(s) 680
BstF5I GGATG 2 cut(s) 361, 453
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 4 cut(s) 346, 568, 579, 764
BstMBI GATC 4 cut(s) 343, 565, 576, 761
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 4 cut(s) 206, 755, 764, 836
BstNI CCWGG 3 cut(s) 41, 522, 594
BstSCI CCNGG 3 cut(s) 39, 520, 592
BstSFI CTRYAG 1 cut(s) 834
BstV1I GCAGC 1 cut(s) 842
BstX2I RGATCY 2 cut(s) 343, 565
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 2 cut(s) 343, 565
BsuRI GGCC 3 cut(s) 64, 137, 815
BtgI CCRYGG 1 cut(s) 680
BtsCI GGATG 2 cut(s) 361, 453
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 240, 433
BveI ACCTGC 3 cut(s) 214, 236, 401
Cac8I GCNNGC 2 cut(s) 221, 817
CaiI CAGNNNCTG 1 cut(s) 833
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 4 cut(s) 392, 431, 468, 721
CviAII CATG 5 cut(s) 122, 263, 274, 580, 681
CviQI GTAC 4 cut(s) 392, 431, 468, 721
DdeI CTNAG 3 cut(s) 59, 490, 780
DpnI GATC 4 cut(s) 345, 567, 578, 763
DpnII GATC 4 cut(s) 343, 565, 576, 761
Eco130I CCWWGG 1 cut(s) 680
Eco147I AGGCCT 2 cut(s) 64, 137
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 308
Eco88I CYCGRG 2 cut(s) 144, 380
EcoRII CCWGG 3 cut(s) 39, 520, 592
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 5 cut(s) 125, 266, 277, 583, 684
FaiI YATR 8 cut(s) 123, 264, 275, 549, 560, 581, 682, 800
FatI CATG 5 cut(s) 121, 262, 273, 579, 680
FbaI TGATCA 1 cut(s) 576
Fnu4HI GCNGC 2 cut(s) 15, 831
FokI GGATG 2 cut(s) 368, 440
Fsp4HI GCNGC 2 cut(s) 15, 831
FspBI CTAG 1 cut(s) 752
GlaI GCGC 1 cut(s) 332
GluI GCNGC 2 cut(s) 15, 831
GsuI CTGGAG 4 cut(s) 91, 525, 693, 759
HaeIII GGCC 3 cut(s) 64, 137, 815
HapII CCGG 1 cut(s) 395
HhaI GCGC 1 cut(s) 333
Hin1II CATG 5 cut(s) 125, 266, 277, 583, 684
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 2 cut(s) 6, 589
HindII GTYRAC 2 cut(s) 6, 589
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 1 cut(s) 259
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 6 cut(s) 6, 431, 440, 589, 605, 676
Hpy188I TCNGA 3 cut(s) 308, 366, 643
Hpy188III TCNNGA 2 cut(s) 108, 574
Hpy8I GTNNAC 6 cut(s) 6, 431, 440, 589, 605, 676
HpyAV CCTTC 2 cut(s) 105, 661
HpyCH4III ACNGT 2 cut(s) 281, 472
HpyCH4V TGCA 4 cut(s) 416, 463, 539, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 755, 764, 836
HpyF3I CTNAG 3 cut(s) 59, 490, 780
Hsp92II CATG 5 cut(s) 125, 266, 277, 583, 684
HspAI GCGC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 576
Kzo9I GATC 4 cut(s) 343, 565, 576, 761
LmnI GCTCC 2 cut(s) 740, 776
Lsp1109I GCAGC 1 cut(s) 842
LweI GCATC 2 cut(s) 313, 472
MaeI CTAG 1 cut(s) 752
MaeIII GTNAC 2 cut(s) 337, 703
MalI GATC 4 cut(s) 345, 567, 578, 763
MboI GATC 4 cut(s) 343, 565, 576, 761
MboII GAAGA 1 cut(s) 338
MflI RGATCY 2 cut(s) 343, 565
MluCI AATT 4 cut(s) 126, 202, 212, 807
MnlI CCTC 6 cut(s) 19, 148, 196, 321, 642, 727
MseI TTAA 1 cut(s) 810
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 767, 833
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 3 cut(s) 41, 522, 594
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 3 cut(s) 41, 522, 594
MwoI GCNNNNNNNGC 4 cut(s) 206, 755, 764, 836
NcoI CCATGG 1 cut(s) 680
NdeII GATC 4 cut(s) 343, 565, 576, 761
NlaIII CATG 5 cut(s) 125, 266, 277, 583, 684
NlaIV GGNNCC 2 cut(s) 378, 526
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 337, 703
NspV TTCGAA 1 cut(s) 161
PaqCI CACCTGC 1 cut(s) 401
PceI AGGCCT 2 cut(s) 64, 137
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 721
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 16, 832
Psp6I CCWGG 3 cut(s) 39, 520, 592
PspGI CCWGG 3 cut(s) 39, 520, 592
PspN4I GGNNCC 2 cut(s) 378, 526
PspPI GGNCC 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 833
PsuI RGATCY 2 cut(s) 343, 565
PvuII CAGCTG 2 cut(s) 767, 833
RsaI GTAC 4 cut(s) 393, 432, 469, 722
RsaNI GTAC 4 cut(s) 392, 431, 468, 721
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 2 cut(s) 15, 831
Sau3AI GATC 4 cut(s) 343, 565, 576, 761
Sau96I GGNCC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 41, 522, 594
SfaNI GCATC 2 cut(s) 313, 472
SfcI CTRYAG 1 cut(s) 834
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 4 cut(s) 126, 202, 212, 807
SseBI AGGCCT 2 cut(s) 64, 137
SsiI CCGC 2 cut(s) 12, 15
SspMI CTAG 1 cut(s) 752
StuI AGGCCT 2 cut(s) 64, 137
StyD4I CCNGG 3 cut(s) 39, 520, 592
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 2 cut(s) 281, 472
TaqI TCGA 1 cut(s) 161
TaqII GACCGA 1 cut(s) 574
TasI AATT 4 cut(s) 126, 202, 212, 807
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TscAI CASTG 2 cut(s) 240, 433
TseFI GTSAC 2 cut(s) 337, 703
TseI GCWGC 1 cut(s) 830
Tsp45I GTSAC 2 cut(s) 337, 703
TspDTI ATGAA 4 cut(s) 21, 251, 350, 391
TspRI CASTG 2 cut(s) 240, 433
VpaK11BI GGWCC 1 cut(s) 308
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.