Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010094

Physical Location & Seq

Genomic Coordinates Forward (+)

3366068 .. 3369750

Gene Structure 3683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16221

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAGCTGCTTCATTGTGTTCATCAACTCTCAAGTCCCAGATCACTGGGCTCGGTGGAGGAGGTCTCAAGCTTCACAAGCCATGTCTTTCACAACCCACTTCGCTTACCTTCACAAGGAGGAAAGGTAAGACTGTGGTGAAGGCTACATCTCGGGTTGACAAGTTTTCAAAAAGCGATATCATTGTTTCCCCATCGATTCTTTCTGCTAACTTTGCCAAGTTGGGAGACCAGGTAAAAGCTGTTGAGTTGGCAGGCTGTGACTGGATCCATGTTGATGTGATGGATGGTCGCTTTGTTCCAAACATTACCATTGGACCACTAGTGGTTGATGCCTTGCGCCCTGTGACAGATCTTCCGTTGGATGTGCATCTGATGATTGTGGAACCTGATCAGAGAGTACCAGATTTTATCAAAGCTGGAGCCGACATAGTCAGTGTTCATTGTGAACAATCTTCCACCATCCATTTGCACCGTGCTGTTAATCAAATAAAGAGTCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCACTAAGTGCAATAGAGTATGTCCTCGATGCTGTTGATTTGGTTTTGATTATGTCCGTAAACCCTGGCTTTGGTGGCCAGAGCTTCATAGAGAGCCAAGTGAAGAAAATTTCAGACTTGAGGAGACTGTGTGTGGAGAAAGGGGTGAACCCATGGATTGAAGTGGATGGTGGAGTTACTCCAGCAAATGCATACAAGGTTATTGAGGCTGGAGCTAATGCTCTTGTTGCTGGTTCTGCTGTATTTGGAGCTAAAGATTATGCTGCAGCCATAAAAGGAATCAAAACCAGCAAACGGCCCGAAGCAGTTGCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019253 GO:0019362 GO:0019637 GO:0019682 GO:0019685 GO:0019693 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055035 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

284

Amino Acids

29.91

Weight (kDa)

8.9

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	63 - 261	6.1e-88	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61410 AT5G61410
fragaria_vesca	FvH4_5g14630
malus_domestica	MD06G1196800.v1.1 MD14G1203700.v1.1
prunus_persica	Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1
pyrus_communis	pycom06g17370 pycom14g16850
rosa_chinensis	RchiOBHm_Chr7g0181861
rosa_laevigata	RLG00000005168
rosa_multiflora	Rmu_sc0021327.1_g000005
rosa_roxburghii	Rroxscaffold_3G00271690
rosa_rugosa	Rorug06G0444400
rosa_samantha	Rh7AG046800 Rh7BG046400 Rh7CG046900 Rh7DG046000
rosa_wichuraiana	Rw7G003870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	1 cut(s)	848
AclWI	GGATC	2 cut(s)	262, 275
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	645
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	2 cut(s)	402, 535
AfiI	CCNNNNNNNGG	3 cut(s)	117, 608, 831
AgsI	TTSAA	2 cut(s)	171, 698
AhlI	ACTAGT	1 cut(s)	322
AjnI	CCWGG	3 cut(s)	231, 529, 601
AluBI	AGCT	9 cut(s)	8, 73, 242, 419, 506, 512, 621, 752, 788
AluI	AGCT	9 cut(s)	8, 73, 242, 419, 506, 512, 621, 752, 788
Alw26I	GTCTC	3 cut(s)	71, 222, 655
AlwI	GGATC	2 cut(s)	262, 275
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	613, 833
ApeKI	GCWGC	3 cut(s)	8, 800, 803
ApoI	RAATTY	1 cut(s)	645
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
Asp718I	GGTACC	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	317, 834
AsuHPI	GGTGA	2 cut(s)	151, 694
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	317
BaeI	ACNNNNGTAYC	2 cut(s)	517, 550
BalI	TGGCCA	1 cut(s)	615
BamHI	GGATCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	787, 815
BccI	CCATC	5 cut(s)	202, 277, 281, 470, 698
BceAI	ACGGC	1 cut(s)	848
BcgI	CGANNNNNNTGC	1 cut(s)	827
BciT130I	CCWGG	3 cut(s)	233, 531, 603
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	71, 222, 655
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	801
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	3 cut(s)	9, 801, 804
BlsI	GCNGC	3 cut(s)	10, 802, 805
Bme1390I	CCNGG	3 cut(s)	233, 531, 603
Bme18I	GGWCC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	317, 834
BmiI	GGNNCC	4 cut(s)	269, 387, 424, 535
BmrFI	CCNGG	3 cut(s)	233, 531, 603
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	322, 379, 556
BmuI	ACTGGG	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	4 cut(s)	441, 534, 702, 768
BpuEI	CTTGAG	3 cut(s)	17, 53, 676
Bsa29I	ATCGAT	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	2 cut(s)	71, 222
BsaJI	CCNNGG	3 cut(s)	529, 601, 689
BsaXI	ACNNNNNCTCC	6 cut(s)	112, 142, 219, 249, 652, 682
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 608, 831
Bse1I	ACTGG	2 cut(s)	52, 269
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	233, 531, 603
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	529, 601, 689
BseGI	GGATG	4 cut(s)	292, 370, 462, 709
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	117, 608, 831
BseNI	ACTGG	2 cut(s)	52, 269
BseRI	GAGGAG	2 cut(s)	75, 673
BseXI	GCAGC	2 cut(s)	787, 815
BshFI	GGCC	2 cut(s)	615, 835
BshNI	GGYRCC	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	3 cut(s)	117, 608, 831
BsmAI	GTCTC	3 cut(s)	71, 222, 655
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	615, 835
Bso31I	GGTCTC	2 cut(s)	71, 222
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	42, 267, 352, 391
Bsp19I	CCATGG	1 cut(s)	689
BspACI	CCGC	1 cut(s)	848
BspANI	GGCC	2 cut(s)	615, 835
BspDI	ATCGAT	1 cut(s)	197
BspLI	GGNNCC	4 cut(s)	269, 387, 424, 535
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	2 cut(s)	262, 275
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	2 cut(s)	71, 222
BsrI	ACTGG	2 cut(s)	52, 269
BssECI	CCNNGG	3 cut(s)	529, 601, 689
BssMI	GATC	4 cut(s)	42, 267, 352, 391
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	3 cut(s)	233, 531, 603
Bst4CI	ACNGT	3 cut(s)	136, 476, 666
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	542
BstDSI	CCRYGG	1 cut(s)	689
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	4 cut(s)	292, 370, 462, 709
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	4 cut(s)	45, 270, 355, 394
BstMAI	GTCTC	3 cut(s)	71, 222, 655
BstMBI	GATC	4 cut(s)	42, 267, 352, 391
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 215, 612, 764, 773
BstNI	CCWGG	3 cut(s)	233, 531, 603
BstSCI	CCNGG	3 cut(s)	231, 529, 601
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	2 cut(s)	787, 815
BstX2I	RGATCY	2 cut(s)	267, 352
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	2 cut(s)	267, 352
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	615, 835
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	689
BtsCI	GGATG	4 cut(s)	292, 370, 462, 709
BtsIMutI	CAGTG	2 cut(s)	45, 442
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	317, 834
ClaI	ATCGAT	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	401, 534
CviAII	CATG	3 cut(s)	84, 272, 690
CviQI	GTAC	2 cut(s)	401, 534
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	4 cut(s)	44, 269, 354, 393
DpnII	GATC	4 cut(s)	42, 267, 352, 391
DraIII	CACNNNGTG	1 cut(s)	545
EaeI	YGGCCR	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	71, 222
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	231, 529, 601
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	689
EcoT22I	ATGCAT	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	3 cut(s)	87, 275, 693
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	83, 271, 689
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	9, 801, 804
FokI	GGATG	4 cut(s)	299, 377, 449, 716
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	9, 801, 804
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	3 cut(s)	9, 801, 804
GsuI	CTGGAG	4 cut(s)	441, 534, 702, 768
HaeIII	GGCC	2 cut(s)	615, 835
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	87, 275, 693
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	199, 496, 816
HphI	GGTGA	2 cut(s)	151, 694
Hpy166II	GTNNAC	4 cut(s)	160, 449, 598, 685
Hpy188I	TCNGA	3 cut(s)	375, 396, 652
Hpy8I	GTNNAC	4 cut(s)	160, 449, 598, 685
HpyAV	CCTTC	2 cut(s)	121, 136
HpyCH4III	ACNGT	3 cut(s)	136, 476, 666
HpyCH4V	TGCA	5 cut(s)	370, 472, 548, 728, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 215, 612, 764, 773
HpyF3I	CTNAG	1 cut(s)	542
Hsp92II	CATG	3 cut(s)	87, 275, 693
HspAI	GCGC	1 cut(s)	340
KpnI	GGTACC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	42, 267, 352, 391
LmnI	GCTCC	4 cut(s)	422, 503, 749, 785
Lsp1109I	GCAGC	2 cut(s)	787, 815
LweI	GCATC	3 cut(s)	322, 379, 556
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	260, 346, 712
MalI	GATC	4 cut(s)	44, 269, 354, 393
MboI	GATC	4 cut(s)	42, 267, 352, 391
MboII	GAAGA	3 cut(s)	347, 447, 652
MflI	RGATCY	2 cut(s)	267, 352
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	1 cut(s)	645
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	53, 56, 114, 572, 651, 736
Mox20I	TGGCCA	1 cut(s)	615
Mph1103I	ATGCAT	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	233, 531, 603
MvaI	CCWGG	3 cut(s)	233, 531, 603
MwoI	GCNNNNNNNGC	5 cut(s)	79, 215, 612, 764, 773
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	4 cut(s)	42, 267, 352, 391
NlaIII	CATG	3 cut(s)	87, 275, 693
NlaIV	GGNNCC	4 cut(s)	269, 387, 424, 535
NmuCI	GTSAC	2 cut(s)	260, 346
NsiI	ATGCAT	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	199, 816
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	10, 802, 805
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	231, 529, 601
PspGI	CCWGG	3 cut(s)	231, 529, 601
PspN4I	GGNNCC	4 cut(s)	269, 387, 424, 535
PspPI	GGNCC	2 cut(s)	317, 834
PstI	CTGCAG	1 cut(s)	805
PsuI	RGATCY	2 cut(s)	267, 352
PsyI	GACNNNGTC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	2 cut(s)	402, 535
RsaNI	GTAC	2 cut(s)	401, 534
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	3 cut(s)	9, 801, 804
Sau3AI	GATC	4 cut(s)	42, 267, 352, 391
Sau96I	GGNCC	2 cut(s)	317, 834
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	3 cut(s)	233, 531, 603
SduI	GDGCHC	1 cut(s)	54
SexAI	ACCWGGT	1 cut(s)	231
SfaNI	GCATC	3 cut(s)	322, 379, 556
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	3 cut(s)	32, 68, 655
SmoI	CTYRAG	3 cut(s)	32, 68, 655
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	1 cut(s)	645
SsiI	CCGC	1 cut(s)	848
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	231, 529, 601
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	3 cut(s)	136, 476, 666
TaqI	TCGA	2 cut(s)	197, 564
TasI	AATT	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	199, 816
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	52, 442
TseFI	GTSAC	2 cut(s)	260, 346
TseI	GCWGC	3 cut(s)	8, 800, 803
Tsp45I	GTSAC	2 cut(s)	260, 346
TspDTI	ATGAA	3 cut(s)	12, 431, 613
TspGWI	ACGGA	2 cut(s)	348, 583
TspRI	CASTG	2 cut(s)	52, 442
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	645
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.