Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010094

Physical Location & Seq

Genomic Coordinates Forward (+)

33113273 .. 33116625

Gene Structure 3353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1196800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCGGCTGCTTCACTTTGTTCGTCAACTCTCAAGTCCCAGCAGATCAGCGGACTCGGCGGAGGTCTTAAGCTTCAAAAACCATCTGTTTCTCAACCCACTTCTCTGACCTTCACAAGGAGGAGATGTAGGACTCTGGTGAAGGCTTCATCTCGGGTTGATAAATTCTCGAAAAGTGACATCATTGTTTCACCATCTATTCTTTCTGCTAACTTTGCCAAGTTGGGAGAGCAGGTAAAAGCTGTAGAGTTGGCAGGTTGTGACTGGATTCATGTCGATGTGATGGATGGCCGTTTTGTTCCAAATATTACCATTGGACCTCTTGTGGTTGATGCTTTGCGTCCTGTGACAGACCTTCCCTTGGACGTGCATCTGATGATCGTGGAGCCTGAACAGCGAGTGCCAGATTTTATCAAAGCTGGAGCAGACATAGTCAGTGTTCATGCTGAACAATCTTCCACCATCCATTTACACCGTTCAGTTAATCTGATAAAGAGTCTGGGAGCTAAAGCTGGAGTTGTGCTCAACCCTGGCACCCCTCTAACGGCAATTGAGTATATCCTCGATGTGGTCGATCTGGTCTTGATTATGTCGGTAAACCCTGGCTTTGGTGGGCAGAGCTTCATAGAAAGCCAAGTGAAGAAAATTGCAGACTTGAGAAGAATGTGTGTGGAGAAAGGAGTGAACCCATGGATTGAAGTGGATGGCGGAGTTGGTCCAGCAAATGCGTACAAGGTTATTGAGGCCGGAGCTAATGCTCTTGTTGCTGGTTCTGCTGTCTTTGGAGCTAAAGATTACGCTGAAGCTATTAAAGGAATCAAGACCAGCAAAAGGCCTGTAGCAGTTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016853 GO:0016854 GO:0016857 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

285

Amino Acids

30.07

Weight (kDa)

9.0

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	63 - 261	3.9e-87	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61410 AT5G61410
fragaria_vesca	FvH4_5g14630
malus_domestica	MD06G1196800.v1.1 MD14G1203700.v1.1
prunus_persica	Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1
pyrus_communis	pycom06g17370 pycom14g16850
rosa_chinensis	RchiOBHm_Chr7g0181861
rosa_laevigata	RLG00000005168
rosa_multiflora	Rmu_sc0021327.1_g000005
rosa_roxburghii	Rroxscaffold_3G00271690
rosa_rugosa	Rorug06G0444400
rosa_samantha	Rh7AG046800 Rh7BG046400 Rh7CG046900 Rh7DG046000
rosa_wichuraiana	Rw7G003870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	223, 245
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	3 cut(s)	51, 60, 708
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	6 cut(s)	117, 361, 544, 568, 608, 831
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	77, 698
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	529, 601
AluBI	AGCT	9 cut(s)	73, 242, 419, 506, 512, 621, 752, 788, 806
AluI	AGCT	9 cut(s)	73, 242, 419, 506, 512, 621, 752, 788, 806
Alw21I	GWGCWC	1 cut(s)	525
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	3 cut(s)	289, 744, 833
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	317, 716
AsuHPI	GGTGA	2 cut(s)	151, 183
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	317, 716
BanI	GGYRCC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	525
BccI	CCATC	6 cut(s)	91, 202, 277, 281, 470, 698
BceAI	ACGGC	2 cut(s)	276, 561
BciT130I	CCWGG	2 cut(s)	531, 603
BfmI	CTRYAG	2 cut(s)	243, 837
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	2 cut(s)	223, 245
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	531, 603
Bme18I	GGWCC	2 cut(s)	317, 716
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	317, 716
BmiI	GGNNCC	2 cut(s)	387, 535
BmrFI	CCNGG	2 cut(s)	531, 603
BmsI	GCATC	2 cut(s)	322, 379
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BpmI	CTGGAG	2 cut(s)	441, 534
BpuEI	CTTGAG	2 cut(s)	17, 676
BsaJI	CCNNGG	4 cut(s)	360, 529, 601, 689
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 219, 249
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 361, 544, 568, 608, 831
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	531, 603
BseDI	CCNNGG	4 cut(s)	360, 529, 601, 689
BseGI	GGATG	3 cut(s)	292, 462, 709
BseLI	CCNNNNNNNGG	6 cut(s)	117, 361, 544, 568, 608, 831
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	3 cut(s)	291, 746, 835
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	6 cut(s)	117, 361, 544, 568, 608, 831
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	291, 746, 835
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	45, 378, 574
Bsp19I	CCATGG	1 cut(s)	689
BspACI	CCGC	3 cut(s)	51, 60, 708
BspANI	GGCC	3 cut(s)	291, 746, 835
BspLI	GGNNCC	2 cut(s)	387, 535
BspMI	ACCTGC	2 cut(s)	223, 245
BspT107I	GGYRCC	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	360, 529, 601, 689
BssMI	GATC	3 cut(s)	45, 378, 574
BssT1I	CCWWGG	2 cut(s)	360, 689
Bst2UI	CCWGG	2 cut(s)	531, 603
Bst4CI	ACNGT	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	689
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	292, 462, 709
BstKTI	GATC	3 cut(s)	48, 381, 577
BstMBI	GATC	3 cut(s)	45, 378, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 215, 394, 764, 773
BstNI	CCWGG	2 cut(s)	531, 603
BstSCI	CCNGG	2 cut(s)	529, 601
BstSFI	CTRYAG	2 cut(s)	243, 837
BsuRI	GGCC	3 cut(s)	291, 746, 835
BtgI	CCRYGG	1 cut(s)	689
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	292, 462, 709
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	442, 855
BveI	ACCTGC	2 cut(s)	223, 245
Cfr13I	GGNCC	2 cut(s)	317, 716
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	3 cut(s)	272, 443, 690
CviQI	GTAC	1 cut(s)	730
DpnI	GATC	3 cut(s)	47, 380, 576
DpnII	GATC	3 cut(s)	45, 378, 574
EaeI	YGGCCR	1 cut(s)	289
EciI	GGCGGA	2 cut(s)	75, 723
Eco130I	CCWWGG	2 cut(s)	360, 689
Eco147I	AGGCCT	1 cut(s)	835
Eco47I	GGWCC	2 cut(s)	317, 716
Eco57I	CTGAAG	1 cut(s)	822
Eco88I	CYCGRG	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	529, 601
EcoT14I	CCWWGG	2 cut(s)	360, 689
ErhI	CCWWGG	2 cut(s)	360, 689
FaeI	CATG	3 cut(s)	275, 446, 693
FaiI	YATR	7 cut(s)	273, 431, 444, 558, 590, 626, 691
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	271, 442, 689
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	299, 449, 716
Fsp4HI	GCNGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	441, 534
HaeIII	GGCC	3 cut(s)	291, 746, 835
HapII	CCGG	1 cut(s)	747
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	275, 446, 693
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	5 cut(s)	54, 133, 268, 496, 816
HpaII	CCGG	1 cut(s)	747
HphI	GGTGA	2 cut(s)	151, 183
Hpy166II	GTNNAC	3 cut(s)	27, 598, 685
Hpy188I	TCNGA	3 cut(s)	108, 375, 489
Hpy188III	TCNNGA	3 cut(s)	169, 583, 820
Hpy8I	GTNNAC	3 cut(s)	27, 598, 685
HpyAV	CCTTC	3 cut(s)	121, 136, 365
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	370, 650, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 215, 394, 764, 773
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	275, 446, 693
Kzo9I	GATC	3 cut(s)	45, 378, 574
LmnI	GCTCC	5 cut(s)	385, 422, 503, 749, 785
LweI	GCATC	2 cut(s)	322, 379
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	176, 260, 346
MalI	GATC	3 cut(s)	47, 380, 576
MboI	GATC	3 cut(s)	45, 378, 574
MboII	GAAGA	3 cut(s)	447, 652, 672
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	3 cut(s)	164, 549, 645
MlyI	GAGTC	3 cut(s)	48, 127, 505
MnlI	CCTC	6 cut(s)	56, 114, 330, 549, 572, 736
MseI	TTAA	3 cut(s)	69, 483, 810
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	51
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	2 cut(s)	531, 603
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	2 cut(s)	531, 603
MwoI	GCNNNNNNNGC	5 cut(s)	57, 215, 394, 764, 773
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	3 cut(s)	45, 378, 574
NlaIII	CATG	3 cut(s)	275, 446, 693
NlaIV	GGNNCC	2 cut(s)	387, 535
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	3 cut(s)	176, 260, 346
PceI	AGGCCT	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	268, 816
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	3 cut(s)	48, 127, 504
PpsI	GAGTC	3 cut(s)	48, 127, 504
Psp6I	CCWGG	2 cut(s)	529, 601
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	529, 601
PspN4I	GGNNCC	2 cut(s)	387, 535
PspPI	GGNCC	2 cut(s)	317, 716
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	69, 483, 810
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	45, 378, 574
Sau96I	GGNCC	2 cut(s)	317, 716
SchI	GAGTC	3 cut(s)	48, 127, 505
ScrFI	CCNGG	2 cut(s)	531, 603
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	322, 379
SfcI	CTRYAG	2 cut(s)	243, 837
SinI	GGWCC	2 cut(s)	317, 716
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	3 cut(s)	32, 68, 655
SmoI	CTYRAG	3 cut(s)	32, 68, 655
Sse9I	AATT	3 cut(s)	164, 549, 645
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	3 cut(s)	51, 60, 708
SspI	AATATT	1 cut(s)	307
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	2 cut(s)	529, 601
StyI	CCWWGG	2 cut(s)	360, 689
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	170, 276, 564, 573
TasI	AATT	3 cut(s)	164, 549, 645
TfiI	GAWTC	2 cut(s)	268, 816
Tru1I	TTAA	3 cut(s)	69, 483, 810
Tru9I	TTAA	3 cut(s)	69, 483, 810
TscAI	CASTG	2 cut(s)	442, 855
TseFI	GTSAC	3 cut(s)	176, 260, 346
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	3 cut(s)	176, 260, 346
TspDTI	ATGAA	4 cut(s)	138, 260, 431, 613
TspRI	CASTG	2 cut(s)	442, 855
Tth111I	GACNNNGTC	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	317, 716
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.