Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010094

Physical Location & Seq

Genomic Coordinates Forward (+)

15945113 .. 15949283

Gene Structure 4171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G197000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCAGCTGCTTCACTTTGCTCATCAACTCTCAAGTCCCAGATCAATGGACTTGGTGGTGGTCTTAAGCTTCAAAGACCATGTCTTTCTCAGCCCACCTCTCTTACCTTCACAAGGAAGAAATGTAAGACTCTGGTGAAGGCTTCAGCTCGGGTTGATAAATTCTCAAAAAGTGATATAATTGTTTCTCCATCTATTCTTTCTGCCAACTTTGCAAAGTTGGGAGAGCAGGTAAAAGCTGTAGAGTTGGCAGGTTGTGACTGGATTCATGTGGATGTAATGGATGGTCGTTTTGTTCCAAATATTACCATTGGACCTCTTGTAGTTGACGCCTTGCGCCCTGTGACAGACCTTCCATTGGATGTGCATCTGATGATTGTGGAACCTGAGCAGCGAGTGCCAGATTTTATCAAAGCTGGAGCCGACATTGTCAGTGTTCATGCTGAACAATCGTCCACCATTCATTTACATCGTTCAGTTAATCAGATAAAGAGTCTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGGTACCCCACTAACTGCAATAGAGTACGTCCTTGATGTGGTTGATCTGGTCTTGATTATGTCGGTAAACCCTGGCTTTGGCGGGCAGAGCTTCATAGAGACCCAAGTGAAGAAAATTTCAGAATTGAGAAGACTGTGCGTGGAGAAAGGGGTGAACCCGTGGATTGAAGTAGATGGTGGAGTTGGTCCAGCAAATGCATATAAGGTTATTGAGGCTGGAGCTAATGCTCTTGTTGCCGGTTCTGCTGTCTTTGGAGCTAAAGATTATGCTGAAGCTATAAAAGGAATCAAGAACAGTAAAAGGCCTGTAGCAGTTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019253 GO:0019362 GO:0019637 GO:0019682 GO:0019685 GO:0019693 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055035 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

284

Amino Acids

29.97

Weight (kDa)

8.9

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61410 AT5G61410
fragaria_vesca	FvH4_5g14630
malus_domestica	MD06G1196800.v1.1 MD14G1203700.v1.1
prunus_persica	Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1
pyrus_communis	pycom06g17370 pycom14g16850
rosa_chinensis	RchiOBHm_Chr7g0181861
rosa_laevigata	RLG00000005168
rosa_multiflora	Rmu_sc0021327.1_g000005
rosa_roxburghii	Rroxscaffold_3G00271690
rosa_rugosa	Rorug06G0444400
rosa_samantha	Rh7AG046800 Rh7BG046400 Rh7CG046900 Rh7DG046000
rosa_wichuraiana	Rw7G003870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	220, 242
Acc65I	GGTACC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	530
AciI	CCGC	1 cut(s)	609
AcsI	RAATTY	2 cut(s)	161, 642
AcuI	CTGAAG	2 cut(s)	129, 819
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	532, 554
AfiI	CCNNNNNNNGG	4 cut(s)	114, 358, 565, 605
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	74, 695
AjnI	CCWGG	2 cut(s)	526, 598
Alw26I	GTCTC	1 cut(s)	620
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	2 cut(s)	8, 391
ApoI	RAATTY	2 cut(s)	161, 642
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
Asp718I	GGTACC	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	314, 713
AsuHPI	GGTGA	2 cut(s)	148, 691
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	2 cut(s)	314, 713
BaeI	ACNNNNGTAYC	2 cut(s)	514, 547
BanI	GGYRCC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	664
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	3 cut(s)	199, 278, 695
BciT130I	CCWGG	2 cut(s)	528, 600
BcoDI	GTCTC	1 cut(s)	620
BfmI	CTRYAG	2 cut(s)	240, 834
BfrI	CTTAAG	1 cut(s)	65
BfuAI	ACCTGC	2 cut(s)	220, 242
BisI	GCNGC	2 cut(s)	9, 392
BlsI	GCNGC	2 cut(s)	10, 393
Bme1390I	CCNGG	2 cut(s)	528, 600
Bme18I	GGWCC	2 cut(s)	314, 713
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	314, 713
BmiI	GGNNCC	3 cut(s)	384, 421, 532
BmrFI	CCNGG	2 cut(s)	528, 600
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	664
BpmI	CTGGAG	3 cut(s)	438, 531, 765
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	3 cut(s)	526, 598, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 358, 565, 605
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	528, 600
BseDI	CCNNGG	3 cut(s)	526, 598, 686
BseGI	GGATG	3 cut(s)	280, 289, 367
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	114, 358, 565, 605
BseMII	CTCAG	2 cut(s)	104, 378
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	1 cut(s)	832
BshNI	GGYRCC	1 cut(s)	530
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	4 cut(s)	114, 358, 565, 605
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	832
Bso31I	GGTCTC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	42, 571
BspACI	CCGC	1 cut(s)	609
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	2 cut(s)	103, 379
BspLI	GGNNCC	3 cut(s)	384, 421, 532
BspMI	ACCTGC	2 cut(s)	220, 242
BspT107I	GGYRCC	1 cut(s)	530
BspTI	CTTAAG	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	3 cut(s)	526, 598, 686
BssMI	GATC	2 cut(s)	42, 571
BssNI	GRCGYC	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	528, 600
Bst4CI	ACNGT	2 cut(s)	663, 824
BstACI	GRCGYC	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	611
BstDEI	CTNAG	2 cut(s)	90, 387
BstDSI	CCRYGG	1 cut(s)	686
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	3 cut(s)	280, 289, 367
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	45, 574
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	2 cut(s)	42, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 397, 615, 761, 770
BstNI	CCWGG	2 cut(s)	528, 600
BstSCI	CCNGG	2 cut(s)	526, 598
BstSFI	CTRYAG	2 cut(s)	240, 834
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	686
BtsCI	GGATG	3 cut(s)	280, 289, 367
BtsI	GCAGTG	1 cut(s)	852
BtsIMutI	CAGTG	2 cut(s)	439, 852
BveI	ACCTGC	2 cut(s)	220, 242
Cac8I	GCNNGC	1 cut(s)	611
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	2 cut(s)	314, 713
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	531, 553
CviAII	CATG	3 cut(s)	81, 269, 440
CviQI	GTAC	2 cut(s)	531, 553
DdeI	CTNAG	2 cut(s)	90, 387
DpnI	GATC	2 cut(s)	44, 573
DpnII	GATC	2 cut(s)	42, 571
Eco147I	AGGCCT	1 cut(s)	832
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	314, 713
Eco57I	CTGAAG	2 cut(s)	129, 819
Eco88I	CYCGRG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	526, 598
EcoT22I	ATGCAT	1 cut(s)	727
FaeI	CATG	3 cut(s)	84, 272, 443
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	80, 268, 439
FauI	CCCGC	1 cut(s)	602
Fnu4HI	GCNGC	2 cut(s)	9, 392
FokI	GGATG	3 cut(s)	287, 296, 374
Fsp4HI	GCNGC	2 cut(s)	9, 392
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	9, 392
GsuI	CTGGAG	3 cut(s)	438, 531, 765
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	1 cut(s)	765
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	84, 272, 443
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	130, 265, 493, 813
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	2 cut(s)	148, 691
Hpy166II	GTNNAC	4 cut(s)	328, 456, 595, 682
Hpy188I	TCNGA	3 cut(s)	372, 486, 649
Hpy188III	TCNNGA	2 cut(s)	580, 817
Hpy8I	GTNNAC	4 cut(s)	328, 456, 595, 682
HpyAV	CCTTC	3 cut(s)	118, 133, 362
HpyCH4III	ACNGT	2 cut(s)	663, 824
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	215, 367, 545, 725, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 397, 615, 761, 770
HpyF3I	CTNAG	2 cut(s)	90, 387
HpySE526I	ACGT	1 cut(s)	555
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	84, 272, 443
HspAI	GCGC	1 cut(s)	337
KpnI	GGTACC	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	42, 571
LmnI	GCTCC	4 cut(s)	419, 500, 746, 782
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	2 cut(s)	257, 343
MalI	GATC	2 cut(s)	44, 573
MboI	GATC	2 cut(s)	42, 571
MboII	GAAGA	3 cut(s)	130, 649, 669
MluCI	AATT	4 cut(s)	161, 180, 642, 650
MlyI	GAGTC	2 cut(s)	124, 502
MnlI	CCTC	3 cut(s)	109, 327, 733
Mph1103I	ATGCAT	1 cut(s)	727
MseI	TTAA	3 cut(s)	66, 480, 522
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	2 cut(s)	528, 600
MvaI	CCWGG	2 cut(s)	528, 600
MwoI	GCNNNNNNNGC	5 cut(s)	212, 397, 615, 761, 770
NdeII	GATC	2 cut(s)	42, 571
NlaIII	CATG	3 cut(s)	84, 272, 443
NlaIV	GGNNCC	3 cut(s)	384, 421, 532
NmuCI	GTSAC	2 cut(s)	257, 343
NsiI	ATGCAT	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	832
PfeI	GAWTC	2 cut(s)	265, 813
PflFI	GACNNNGTC	2 cut(s)	81, 428
PkrI	GCNGC	2 cut(s)	10, 393
PleI	GAGTC	2 cut(s)	124, 501
PpsI	GAGTC	2 cut(s)	124, 501
Psp6I	CCWGG	2 cut(s)	526, 598
PspGI	CCWGG	2 cut(s)	526, 598
PspN4I	GGNNCC	3 cut(s)	384, 421, 532
PspPI	GGNCC	2 cut(s)	314, 713
PsyI	GACNNNGTC	2 cut(s)	81, 428
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	2 cut(s)	532, 554
RsaNI	GTAC	2 cut(s)	531, 553
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	66, 480, 522
SatI	GCNGC	2 cut(s)	9, 392
Sau3AI	GATC	2 cut(s)	42, 571
Sau96I	GGNCC	2 cut(s)	314, 713
SchI	GAGTC	2 cut(s)	124, 502
ScrFI	CCNGG	2 cut(s)	528, 600
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	2 cut(s)	240, 834
SinI	GGWCC	2 cut(s)	314, 713
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	32, 65
SmoI	CTYRAG	2 cut(s)	32, 65
Sse9I	AATT	4 cut(s)	161, 180, 642, 650
SseBI	AGGCCT	1 cut(s)	832
SsiI	CCGC	1 cut(s)	609
SspI	AATATT	1 cut(s)	304
StuI	AGGCCT	1 cut(s)	832
StyD4I	CCNGG	2 cut(s)	526, 598
TaaI	ACNGT	2 cut(s)	663, 824
TaiI	ACGT	1 cut(s)	558
TasI	AATT	4 cut(s)	161, 180, 642, 650
TfiI	GAWTC	2 cut(s)	265, 813
Tru1I	TTAA	3 cut(s)	66, 480, 522
Tru9I	TTAA	3 cut(s)	66, 480, 522
TscAI	CASTG	2 cut(s)	439, 852
TseFI	GTSAC	2 cut(s)	257, 343
TseI	GCWGC	2 cut(s)	8, 391
Tsp45I	GTSAC	2 cut(s)	257, 343
TspDTI	ATGAA	4 cut(s)	257, 428, 452, 610
TspRI	CASTG	2 cut(s)	439, 852
Tth111I	GACNNNGTC	2 cut(s)	81, 428
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	314, 713
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	161, 642
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.