Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010094

Physical Location & Seq

Genomic Coordinates Reverse (-)

8290966 .. 8294536

Gene Structure 3571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCTGCTGCTTCATTGTGTTCATCAACTCTCAAGTCCCAGATCACTGGACTTGGTCTTAAGCTTCAAAAGCCATGTCTTTCACAACCCAATTCCCTTACCTTCACAAGGAGGAAAGGTAAGACTGTGGTGAAGGCTACATCTCGGGTTGATAGGTTCTCGAAAAGCGATATCATTGTTTCTCCATCGATTCTTTCTGCTAACTTTGCCAAGTTGGGAGAACAGGTAAAAGCTGTAGAGTTGGCAGGCTGTGACTGGATTCATGTTGACGTGATGGATGGTCGTTTTGTTCCAAACATTACCATTGGACCACTAGTGGTTGATGCCTTGCGCCCTGTAACAGATCTTCCTTTGGACGTGCATCTGATGATTGTGGAACCCGATCAGAGAGTGCCAGATTTTATCAAAGCTGGAGCAGACATAGTCAGTGTTCATTGTGAACAATCTTCCACCATCCATTTGCACCGAGCTGTTAATCAAATAAAGAGTCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCACTAAGTGCAATAGAGTATGTCCTTGATGCGGTTGATTTGGTTTTGATTATGTCCGTAAACCCTGGCTTTGGTGGCCAGAGCTTCATAGAGAGCCAAGTGAAGAAAATTTCAGACTTGAGAAGACTGTGTGTGGAGAAAGGTGTGAACCCATGGATCGAGGTGGATGGTGGAGTTACTCCAGCAAATGCATACAAGGTTATTGAGGCTGGAGCTAATGCTCTTGTTGCGGGTTCTGCTGTCTTTGGAGCTAAAGATTATGCTGCAGCCATAAAAGGAATCAAAACCAGCAAACGGCCCGAAGCAGTTGCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019253 GO:0019362 GO:0019637 GO:0019682 GO:0019685 GO:0019693 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055035 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

282

Amino Acids

29.79

Weight (kDa)

8.92

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	60 - 258	4.1e-88	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61410 AT5G61410
fragaria_vesca	FvH4_5g14630
malus_domestica	MD06G1196800.v1.1 MD14G1203700.v1.1
prunus_persica	Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1
pyrus_communis	pycom06g17370 pycom14g16850
rosa_chinensis	RchiOBHm_Chr7g0181861
rosa_laevigata	RLG00000005168
rosa_multiflora	Rmu_sc0021327.1_g000005
rosa_roxburghii	Rroxscaffold_3G00271690
rosa_rugosa	Rorug06G0444400
rosa_samantha	Rh7AG046800 Rh7BG046400 Rh7CG046900 Rh7DG046000
rosa_wichuraiana	Rw7G003870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	3 cut(s)	560, 758, 839
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	636
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	4 cut(s)	108, 559, 599, 822
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	313
AjiI	CACGTC	2 cut(s)	271, 358
AjnI	CCWGG	2 cut(s)	520, 592
AluBI	AGCT	9 cut(s)	64, 233, 410, 470, 497, 503, 612, 743, 779
AluI	AGCT	9 cut(s)	64, 233, 410, 470, 497, 503, 612, 743, 779
AlwI	GGATC	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	604, 824
ApeKI	GCWGC	3 cut(s)	8, 791, 794
ApoI	RAATTY	1 cut(s)	636
ArsI	GACNNNNNNTTYG	4 cut(s)	61, 93, 472, 504
Asp718I	GGTACC	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	308, 825
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BalI	TGGCCA	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
BbsI	GAAGAC	1 cut(s)	658
BbvI	GCAGC	2 cut(s)	778, 806
BccI	CCATC	5 cut(s)	193, 268, 272, 461, 689
BceAI	ACGGC	1 cut(s)	839
BcgI	CGANNNNNNTGC	1 cut(s)	818
BciT130I	CCWGG	2 cut(s)	522, 594
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	2 cut(s)	234, 792
BfrI	CTTAAG	1 cut(s)	59
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	3 cut(s)	9, 792, 795
BlsI	GCNGC	3 cut(s)	10, 793, 796
Bme1390I	CCNGG	2 cut(s)	522, 594
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	2 cut(s)	271, 358
BmgT120I	GGNCC	2 cut(s)	308, 825
BmiI	GGNNCC	2 cut(s)	378, 526
BmrFI	CCNGG	2 cut(s)	522, 594
BmsI	GCATC	3 cut(s)	313, 370, 547
BpiI	GAAGAC	1 cut(s)	658
BpmI	CTGGAG	4 cut(s)	432, 525, 693, 759
BpuEI	CTTGAG	2 cut(s)	17, 667
Bsa29I	ATCGAT	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	520, 592, 680
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 210, 240
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 559, 599, 822
Bse1I	ACTGG	2 cut(s)	52, 260
BseBI	CCWGG	2 cut(s)	522, 594
BseCI	ATCGAT	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	520, 592, 680
BseGI	GGATG	3 cut(s)	283, 453, 700
BseLI	CCNNNNNNNGG	4 cut(s)	108, 559, 599, 822
BseNI	ACTGG	2 cut(s)	52, 260
BseXI	GCAGC	2 cut(s)	778, 806
BshFI	GGCC	2 cut(s)	606, 826
BshNI	GGYRCC	1 cut(s)	524
BshVI	ATCGAT	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	4 cut(s)	108, 559, 599, 822
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	606, 826
BsoBI	CYCGRG	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	42, 343, 382, 684
Bsp19I	CCATGG	1 cut(s)	680
BspACI	CCGC	3 cut(s)	560, 758, 839
BspANI	GGCC	2 cut(s)	606, 826
BspDI	ATCGAT	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	378, 526
BspMAI	CTGCAG	1 cut(s)	796
BspPI	GGATC	1 cut(s)	692
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	52, 260
BssECI	CCNNGG	3 cut(s)	520, 592, 680
BssMI	GATC	4 cut(s)	42, 343, 382, 684
BssT1I	CCWWGG	1 cut(s)	680
Bst2UI	CCWGG	2 cut(s)	522, 594
Bst4CI	ACNGT	2 cut(s)	127, 657
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	533
BstDSI	CCRYGG	1 cut(s)	680
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	3 cut(s)	283, 453, 700
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	4 cut(s)	45, 346, 385, 687
BstMBI	GATC	4 cut(s)	42, 343, 382, 684
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 206, 603, 755, 764
BstNI	CCWGG	2 cut(s)	522, 594
BstSCI	CCNGG	2 cut(s)	520, 592
BstSFI	CTRYAG	2 cut(s)	234, 792
BstV1I	GCAGC	2 cut(s)	778, 806
BstV2I	GAAGAC	1 cut(s)	658
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	606, 826
BsuTUI	ATCGAT	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	680
BtrI	CACGTC	2 cut(s)	271, 358
BtsCI	GGATG	3 cut(s)	283, 453, 700
BtsIMutI	CAGTG	2 cut(s)	45, 433
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	308, 825
ClaI	ATCGAT	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	3 cut(s)	75, 263, 681
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	4 cut(s)	44, 345, 384, 686
DpnII	GATC	4 cut(s)	42, 343, 382, 684
DraIII	CACNNNGTG	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	520, 592
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	3 cut(s)	78, 266, 684
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	74, 262, 680
FauI	CCCGC	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	9, 792, 795
FokI	GGATG	3 cut(s)	290, 440, 707
Fsp4HI	GCNGC	3 cut(s)	9, 792, 795
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	3 cut(s)	9, 792, 795
GsuI	CTGGAG	4 cut(s)	432, 525, 693, 759
HaeIII	GGCC	2 cut(s)	606, 826
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	78, 266, 684
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	4 cut(s)	190, 259, 487, 807
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	4 cut(s)	268, 440, 589, 676
Hpy188I	TCNGA	3 cut(s)	366, 387, 643
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	4 cut(s)	268, 440, 589, 676
HpyAV	CCTTC	2 cut(s)	112, 127
HpyCH4III	ACNGT	2 cut(s)	127, 657
HpyCH4IV	ACGT	2 cut(s)	270, 357
HpyCH4V	TGCA	5 cut(s)	361, 463, 539, 719, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 206, 603, 755, 764
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	2 cut(s)	270, 357
Hsp92II	CATG	3 cut(s)	78, 266, 684
HspAI	GCGC	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	42, 343, 382, 684
LmnI	GCTCC	4 cut(s)	413, 494, 740, 776
Lsp1109I	GCAGC	2 cut(s)	778, 806
LweI	GCATC	3 cut(s)	313, 370, 547
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	270, 357
MaeIII	GTNAC	3 cut(s)	251, 337, 703
MalI	GATC	4 cut(s)	44, 345, 384, 686
MboI	GATC	4 cut(s)	42, 343, 382, 684
MboII	GAAGA	4 cut(s)	338, 438, 643, 663
MflI	RGATCY	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	2 cut(s)	91, 636
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	3 cut(s)	105, 682, 727
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	721
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	2 cut(s)	60, 474
Msp20I	TGGCCA	1 cut(s)	606
MspCI	CTTAAG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	522, 594
MvaI	CCWGG	2 cut(s)	522, 594
MwoI	GCNNNNNNNGC	5 cut(s)	70, 206, 603, 755, 764
NcoI	CCATGG	1 cut(s)	680
NdeII	GATC	4 cut(s)	42, 343, 382, 684
NlaIII	CATG	3 cut(s)	78, 266, 684
NlaIV	GGNNCC	2 cut(s)	378, 526
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	190, 259, 807
PflFI	GACNNNGTC	2 cut(s)	54, 422
PkrI	GCNGC	3 cut(s)	10, 793, 796
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	520, 592
PspGI	CCWGG	2 cut(s)	520, 592
PspN4I	GGNNCC	2 cut(s)	378, 526
PspPI	GGNCC	2 cut(s)	308, 825
PstI	CTGCAG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	2 cut(s)	54, 422
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	60, 474
SatI	GCNGC	3 cut(s)	9, 792, 795
Sau3AI	GATC	4 cut(s)	42, 343, 382, 684
Sau96I	GGNCC	2 cut(s)	308, 825
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	522, 594
SfaNI	GCATC	3 cut(s)	313, 370, 547
SfcI	CTRYAG	2 cut(s)	234, 792
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	32, 59, 646
SmoI	CTYRAG	3 cut(s)	32, 59, 646
SpeI	ACTAGT	1 cut(s)	313
Sse9I	AATT	2 cut(s)	91, 636
SsiI	CCGC	3 cut(s)	560, 758, 839
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	520, 592
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	127, 657
TaiI	ACGT	2 cut(s)	273, 360
TaqI	TCGA	3 cut(s)	161, 188, 687
TasI	AATT	2 cut(s)	91, 636
TfiI	GAWTC	3 cut(s)	190, 259, 807
Tru1I	TTAA	2 cut(s)	60, 474
Tru9I	TTAA	2 cut(s)	60, 474
TscAI	CASTG	2 cut(s)	52, 433
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	8, 791, 794
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	12, 251, 422, 604
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	52, 433
Tth111I	GACNNNGTC	2 cut(s)	54, 422
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	636
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.