Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010094

Physical Location & Seq

Genomic Coordinates Forward (+)

21374891 .. 21377588

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCGGCTGCTTCACTTTGTTCGTCAACTCTCAAGTCCCAGCAGATCAGCGGACTCGGCGGAGGTCTTAAGCTTCAAAAACCATCTGTTTCTGAACCCACTTCTCTTACCTTCACAAGGAGGAGATGTAGGACTGTGGTGAAGGCTTCATCTCGGGTTGATAAATTCTCGAAAAGTGACATCATTGTTTCACCATCTATTCTTTCTGCTAACTTTGCCAAGTTGGGAGAGCAGGTAAAAGCTGTAGAGTTGGCAGGTTGTGACTGGATTCATGTCGATGTGATGGATGGCCGTTTTGTTCCAAATATTACCATTGGACCTCTTGTGGTTGATGCTTTGCGCCCTGTGACAGACCTTCCTTTGGACGTGCATCTGATGATCGTGGAGCCTGACCAGCGAGTGCCAGATTTTATCAAAGCTGGAGCAGACATAGTCAGTGTTCATGCTGAACAATCTTCCACCATCCATTTACACCGTTCAGTTAATCAGATAAAGAGTCTGGGAGCTAAAGCTGGAGTTGTGCTGAACCCTGGCACCCCTCTAACGGCAATTGAGTATATTCTCGATGTGGTTGATCTGGTCTTGATTATGTCGGTAAACCCTGGCTTTGGTGGGCAGAGCTTCATAGAAAGCCAGGGAGTGAACCCATGGATTGAAGTGGATGGCGGAGTTGGTCCAGCAAATGCGTACAAGGTTATTGAGGCCGGAGCTAATGCTCTTGTTGCTGGTTCTGCTGTCTTTGGAGCTAAAGATTACGCTGAAGCTATTAAAGGAATCAAGACCAGCAAAAGGCCTGTAGCAGTTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019253 GO:0019362 GO:0019637 GO:0019682 GO:0019685 GO:0019693 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055035 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

271

Amino Acids

28.39

Weight (kDa)

7.73

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61410 AT5G61410
fragaria_vesca	FvH4_5g14630
malus_domestica	MD06G1196800.v1.1 MD14G1203700.v1.1
prunus_persica	Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1 Prupe.5G197000_v2.0.a1
pyrus_communis	pycom06g17370 pycom14g16850
rosa_chinensis	RchiOBHm_Chr7g0181861
rosa_laevigata	RLG00000005168
rosa_multiflora	Rmu_sc0021327.1_g000005
rosa_roxburghii	Rroxscaffold_3G00271690
rosa_rugosa	Rorug06G0444400
rosa_samantha	Rh7AG046800 Rh7BG046400 Rh7CG046900 Rh7DG046000
rosa_wichuraiana	Rw7G003870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	223, 245
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	3 cut(s)	51, 60, 666
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	5 cut(s)	117, 361, 544, 608, 789
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	77, 656
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	3 cut(s)	529, 601, 633
AluBI	AGCT	9 cut(s)	73, 242, 419, 506, 512, 621, 710, 746, 764
AluI	AGCT	9 cut(s)	73, 242, 419, 506, 512, 621, 710, 746, 764
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	3 cut(s)	289, 702, 791
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	317, 674
AsuHPI	GGTGA	2 cut(s)	151, 183
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	317, 674
BanI	GGYRCC	1 cut(s)	533
BccI	CCATC	6 cut(s)	91, 202, 277, 281, 470, 656
BceAI	ACGGC	2 cut(s)	276, 561
BciT130I	CCWGG	3 cut(s)	531, 603, 635
BfmI	CTRYAG	2 cut(s)	243, 795
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	2 cut(s)	223, 245
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	531, 603, 635
Bme18I	GGWCC	2 cut(s)	317, 674
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	317, 674
BmiI	GGNNCC	2 cut(s)	387, 535
BmrFI	CCNGG	3 cut(s)	531, 603, 635
BmsI	GCATC	2 cut(s)	322, 379
BpmI	CTGGAG	2 cut(s)	441, 534
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	529, 601, 634, 647
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 219, 249
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 361, 544, 608, 789
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	3 cut(s)	531, 603, 635
BseDI	CCNNGG	4 cut(s)	529, 601, 634, 647
BseGI	GGATG	3 cut(s)	292, 462, 667
BseLI	CCNNNNNNNGG	5 cut(s)	117, 361, 544, 608, 789
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	3 cut(s)	291, 704, 793
BshNI	GGYRCC	1 cut(s)	533
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	5 cut(s)	117, 361, 544, 608, 789
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	291, 704, 793
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	45, 378, 574
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	3 cut(s)	51, 60, 666
BspANI	GGCC	3 cut(s)	291, 704, 793
BspLI	GGNNCC	2 cut(s)	387, 535
BspMI	ACCTGC	2 cut(s)	223, 245
BspT107I	GGYRCC	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	529, 601, 634, 647
BssMI	GATC	3 cut(s)	45, 378, 574
BssT1I	CCWWGG	1 cut(s)	647
Bst2UI	CCWGG	3 cut(s)	531, 603, 635
Bst4CI	ACNGT	2 cut(s)	136, 476
BstAFI	CTTAAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	647
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	292, 462, 667
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	3 cut(s)	48, 381, 577
BstMBI	GATC	3 cut(s)	45, 378, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 215, 394, 722, 731
BstNI	CCWGG	3 cut(s)	531, 603, 635
BstSCI	CCNGG	3 cut(s)	529, 601, 633
BstSFI	CTRYAG	2 cut(s)	243, 795
BsuRI	GGCC	3 cut(s)	291, 704, 793
BtgI	CCRYGG	1 cut(s)	647
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	292, 462, 667
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	2 cut(s)	442, 813
BveI	ACCTGC	2 cut(s)	223, 245
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	317, 674
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	3 cut(s)	272, 443, 648
CviQI	GTAC	1 cut(s)	688
DpnI	GATC	3 cut(s)	47, 380, 576
DpnII	GATC	3 cut(s)	45, 378, 574
EaeI	YGGCCR	1 cut(s)	289
EciI	GGCGGA	2 cut(s)	75, 681
Eco130I	CCWWGG	1 cut(s)	647
Eco147I	AGGCCT	1 cut(s)	793
Eco47I	GGWCC	2 cut(s)	317, 674
Eco57I	CTGAAG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	529, 601, 633
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	3 cut(s)	275, 446, 651
FaiI	YATR	7 cut(s)	273, 431, 444, 558, 590, 626, 649
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	271, 442, 647
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	299, 449, 674
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	441, 534
HaeIII	GGCC	3 cut(s)	291, 704, 793
HapII	CCGG	1 cut(s)	705
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	275, 446, 651
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	54, 268, 496, 774
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	2 cut(s)	151, 183
Hpy166II	GTNNAC	3 cut(s)	27, 598, 643
Hpy188I	TCNGA	3 cut(s)	94, 375, 489
Hpy188III	TCNNGA	4 cut(s)	169, 563, 583, 778
Hpy8I	GTNNAC	3 cut(s)	27, 598, 643
HpyAV	CCTTC	3 cut(s)	121, 136, 365
HpyCH4III	ACNGT	2 cut(s)	136, 476
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	370, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 215, 394, 722, 731
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	275, 446, 651
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	45, 378, 574
LmnI	GCTCC	5 cut(s)	385, 422, 503, 707, 743
LweI	GCATC	2 cut(s)	322, 379
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	176, 260, 346
MalI	GATC	3 cut(s)	47, 380, 576
MboI	GATC	3 cut(s)	45, 378, 574
MboII	GAAGA	1 cut(s)	447
MfeI	CAATTG	1 cut(s)	549
MluCI	AATT	2 cut(s)	164, 549
MlyI	GAGTC	2 cut(s)	48, 505
MnlI	CCTC	5 cut(s)	56, 114, 330, 549, 694
MseI	TTAA	3 cut(s)	69, 483, 768
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	51
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	3 cut(s)	531, 603, 635
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	3 cut(s)	531, 603, 635
MwoI	GCNNNNNNNGC	5 cut(s)	57, 215, 394, 722, 731
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	3 cut(s)	45, 378, 574
NlaIII	CATG	3 cut(s)	275, 446, 651
NlaIV	GGNNCC	2 cut(s)	387, 535
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	3 cut(s)	176, 260, 346
PceI	AGGCCT	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	268, 774
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	48, 504
PpsI	GAGTC	2 cut(s)	48, 504
Psp6I	CCWGG	3 cut(s)	529, 601, 633
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	3 cut(s)	529, 601, 633
PspN4I	GGNNCC	2 cut(s)	387, 535
PspPI	GGNCC	2 cut(s)	317, 674
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	69, 483, 768
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	45, 378, 574
Sau96I	GGNCC	2 cut(s)	317, 674
SchI	GAGTC	2 cut(s)	48, 505
ScrFI	CCNGG	3 cut(s)	531, 603, 635
SfaNI	GCATC	2 cut(s)	322, 379
SfcI	CTRYAG	2 cut(s)	243, 795
SinI	GGWCC	2 cut(s)	317, 674
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	32, 68
SmoI	CTYRAG	2 cut(s)	32, 68
Sse9I	AATT	2 cut(s)	164, 549
SseBI	AGGCCT	1 cut(s)	793
SsiI	CCGC	3 cut(s)	51, 60, 666
SspI	AATATT	1 cut(s)	307
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	3 cut(s)	529, 601, 633
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	136, 476
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	170, 276, 564
TasI	AATT	2 cut(s)	164, 549
TfiI	GAWTC	2 cut(s)	268, 774
Tru1I	TTAA	3 cut(s)	69, 483, 768
Tru9I	TTAA	3 cut(s)	69, 483, 768
TscAI	CASTG	2 cut(s)	442, 813
TseFI	GTSAC	3 cut(s)	176, 260, 346
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	3 cut(s)	176, 260, 346
TspDTI	ATGAA	4 cut(s)	138, 260, 431, 613
TspRI	CASTG	2 cut(s)	442, 813
Tth111I	GACNNNGTC	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	317, 674
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.