AT5G61840

Exostosin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24839177 .. 24842143
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61840.1

Sequence Viewer

Length: 1248 bp
ATGAAGTTATCGAGCTGCGTTTTGATCTTCCTTCTATGTAACACATTCTCCTCGATTTCTGCTTTCCGTCTGAGTCGGAGTCAACCAACTGAGCGAATTTCAGGTAGTGCTGGTGATGTGTTGGAAGATGATCCCGTGGGAAGACTGAAAGTCTTTGTTTATGAGCTTCCAAGTAAATACAACAAGAAGATACTTCAGAAGGATCCGAGATGTCTAAACCACATGTTTGCTGCTGAGATATATATGCAACGGTTTCTTTTATCTAGCCCAGTTCGAACACTTAATCCCGAGGAAGCTGATTGGTTCTACGTACCTGTGTACACCACTTGTGATCTCACGCCTAATGGGCTTCCTCTTCCTTTTAAATCTCCACGAATGATGAGAAGTGCCATTCAGCTTATTGCTTCCAATTGGCCATACTGGAATCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACACTGGTGCAGACATTTGGACAAAGGAATCATGTTTGCTTGAAAGAAGGTTCAATCACTGTTCCTCCATATGCTCCACCACAGAAGATGCAGTCACACTTAATTCCCGAAAAAACTCCTCGATCCATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGTTATTATGCGAGGGGTGCAAGAGCAGCTGTATGGGAAAACTTCAAAGACAATCCGCTGTTTGACATCTCAACAGAGCACCCAACAACATATTATGAGGACATGCAGAGAGCAATCTTCTGCCTATGCCCACTTGGATGGGCCCCATGGAGTCCAAGACTGGTGGAAGCAGTGATATTCGGTTGCATCCCTGTGATCATAGCAGACGACATCGTGTTACCTTTTGCAGATGCAATCCCTTGGGAAGATATTGGTGTGTTTGTGGATGAGAAAGATGTCCCTTACCTGGACACAATACTCACATCGATCCCACCAGAGGTTATACTGAGAAAACAGAGGTTGTTGGCAAACCCGTCGATGAAACAAGCCATGCTGTTCCCGCAACCGGCTCAACCAGGGGATGCGTTTCATCAAGTATTGAATGGGTTGGCTCGTAAGCTGCCTCATGAGAGGAGTGTGTATCTGAGACCAGGTGAGAAGCTGTTGAACTGGACGGCAGGACCGGTCGCTGATCTGAAACCTTGGTAA

Protein Analysis

415

Amino Acids

47.19

Weight (kDa)

6.76

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 48 - 343 1.5e-74 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013973)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 776, 1100
AclWI GGATC 5 cut(s) 125, 197, 210, 657, 1021
AcoI YGGCCR 1 cut(s) 413
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 2 cut(s) 312, 320
AfiI CCNNNNNNNGG 4 cut(s) 719, 1006, 1036, 1105
AflIII ACRYGT 1 cut(s) 222
AgeI ACCGGT 1 cut(s) 1222
AgsI TTSAA 6 cut(s) 533, 583, 594, 766, 1141, 1207
AhdI GACNNNNNGTC 1 cut(s) 149
AjnI CCWGG 3 cut(s) 1005, 1114, 1189
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 8 cut(s) 15, 166, 296, 397, 539, 749, 1159, 1201
AluI AGCT 8 cut(s) 15, 166, 296, 397, 539, 749, 1159, 1201
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 1180
AlwI GGATC 5 cut(s) 125, 197, 210, 657, 1021
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 413, 861
ApaI GGGCCC 1 cut(s) 865
ApeKI GCWGC 4 cut(s) 15, 230, 746, 1159
ApoI RAATTY 1 cut(s) 96
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AsiGI ACCGGT 1 cut(s) 1222
AspS9I GGNCC 3 cut(s) 861, 862, 1220
AsuHPI GGTGA 2 cut(s) 125, 1205
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 1220
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 865
BalI TGGCCA 1 cut(s) 415
BamHI GGATCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 865
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 4 cut(s) 2, 217, 758, 1146
BccI CCATC 2 cut(s) 674, 852
BceAI ACGGC 1 cut(s) 1230
BcgI CGANNNNNNTGC 2 cut(s) 1056, 1090
BciT130I CCWGG 3 cut(s) 1007, 1116, 1191
BclI TGATCA 1 cut(s) 915
BcoDI GTCTC 1 cut(s) 1180
BfaI CTAG 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 346
BisI GCNGC 4 cut(s) 16, 231, 747, 1160
BlsI GCNGC 4 cut(s) 17, 232, 748, 1161
Bme1390I CCNGG 3 cut(s) 1007, 1116, 1191
Bme18I GGWCC 1 cut(s) 1220
BmeRI GACNNNNNGTC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 3 cut(s) 861, 862, 1220
BmiI GGNNCC 4 cut(s) 204, 475, 863, 864
BmrFI CCNGG 3 cut(s) 1007, 1116, 1191
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 4 cut(s) 618, 915, 940, 1111
BmuI ACTGGG 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 274
Bsa29I ATCGAT 1 cut(s) 1025
BsaAI YACGTR 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 1180
BsaJI CCNNGG 6 cut(s) 135, 288, 866, 959, 1115, 1241
BsaWI WCCGGW 1 cut(s) 1222
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 589, 619
Bsc4I CCNNNNNNNGG 4 cut(s) 719, 1006, 1036, 1105
Bse118I RCCGGY 2 cut(s) 1105, 1222
Bse1I ACTGG 5 cut(s) 269, 425, 549, 885, 1214
Bse21I CCTNAGG 1 cut(s) 714
BseBI CCWGG 3 cut(s) 1007, 1116, 1191
BseCI ATCGAT 1 cut(s) 1025
BseDI CCNNGG 6 cut(s) 135, 288, 866, 959, 1115, 1241
BseGI GGATG 4 cut(s) 863, 906, 991, 1126
BseLI CCNNNNNNNGG 4 cut(s) 719, 1006, 1036, 1105
BseMII CTCAG 6 cut(s) 62, 81, 225, 705, 1037, 1175
BseNI ACTGG 5 cut(s) 269, 425, 549, 885, 1214
BseRI GAGGAG 3 cut(s) 40, 648, 1186
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 4 cut(s) 2, 217, 758, 1146
BsgI GTGCAG 1 cut(s) 569
Bsh1285I CGRYCG 1 cut(s) 1227
BshFI GGCC 2 cut(s) 415, 863
BshTI ACCGGT 1 cut(s) 1222
BshVI ATCGAT 1 cut(s) 1025
BsiEI CGRYCG 1 cut(s) 1227
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 2 cut(s) 1106, 1223
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 4 cut(s) 719, 1006, 1036, 1105
BsmAI GTCTC 1 cut(s) 1180
BsmFI GGGAC 1 cut(s) 983
BsnI GGCC 2 cut(s) 415, 863
Bso31I GGTCTC 1 cut(s) 1180
BsoBI CYCGRG 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 274
Bsp120I GGGCCC 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 801, 865
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
Bsp19I CCATGG 1 cut(s) 866
BspACI CCGC 2 cut(s) 776, 1100
BspANI GGCC 2 cut(s) 415, 863
BspCNI CTCAG 6 cut(s) 63, 82, 226, 706, 1038, 1176
BspDI ATCGAT 1 cut(s) 1025
BspHI TCATGA 2 cut(s) 463, 1165
BspLI GGNNCC 4 cut(s) 204, 475, 863, 864
BspPI GGATC 5 cut(s) 125, 197, 210, 657, 1021
BspT104I TTCGAA 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 1180
BsrFI RCCGGY 2 cut(s) 1105, 1222
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 5 cut(s) 269, 425, 549, 885, 1214
BssAI RCCGGY 2 cut(s) 1105, 1222
BssECI CCNNGG 6 cut(s) 135, 288, 866, 959, 1115, 1241
BssMI GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
BssT1I CCWWGG 3 cut(s) 866, 959, 1241
Bst2UI CCWGG 3 cut(s) 1007, 1116, 1191
Bst4CI ACNGT 2 cut(s) 252, 601
Bst6I CTCTTC 3 cut(s) 360, 489, 505
BstAUI TGTACA 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 274
BstDEI CTNAG 6 cut(s) 71, 90, 234, 714, 1046, 1184
BstDSI CCRYGG 2 cut(s) 135, 866
BstF5I GGATG 4 cut(s) 863, 906, 991, 1126
BstKTI GATC 8 cut(s) 27, 133, 205, 334, 665, 918, 1029, 1234
BstMAI GTCTC 1 cut(s) 1180
BstMBI GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
BstMCI CGRYCG 1 cut(s) 1227
BstMWI GCNNNNNNNGC 4 cut(s) 346, 737, 746, 1099
BstNI CCWGG 3 cut(s) 1007, 1116, 1191
BstNSI RCATGY 2 cut(s) 226, 826
BstSCI CCNGG 3 cut(s) 1005, 1114, 1189
BstSLI GKGCMC 1 cut(s) 865
BstSNI TACGTA 1 cut(s) 310
BstV1I GCAGC 4 cut(s) 2, 217, 758, 1146
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 858
BstYI RGATCY 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 1025
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 2 cut(s) 415, 863
BsuTUI ATCGAT 1 cut(s) 1025
BtgI CCRYGG 2 cut(s) 135, 866
BtsCI GGATG 4 cut(s) 863, 906, 991, 1126
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 3 cut(s) 542, 597, 897
CciI TCATGA 2 cut(s) 463, 1165
Cfr10I RCCGGY 2 cut(s) 1105, 1222
Cfr13I GGNCC 3 cut(s) 861, 862, 1220
ClaI ATCGAT 1 cut(s) 1025
CsiI ACCWGGT 1 cut(s) 1189
Csp6I GTAC 2 cut(s) 311, 319
CspAI ACCGGT 1 cut(s) 1222
CspCI CAANNNNNGTGG 2 cut(s) 864, 899
CviAII CATG 7 cut(s) 223, 464, 572, 823, 867, 1090, 1166
CviQI GTAC 2 cut(s) 311, 319
DdeI CTNAG 6 cut(s) 71, 90, 234, 714, 1046, 1184
DpnI GATC 8 cut(s) 26, 132, 204, 333, 664, 917, 1028, 1233
DpnII GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
DraI TTTAAA 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 3 cut(s) 360, 489, 505
Eam1105I GACNNNNNGTC 1 cut(s) 149
EarI CTCTTC 3 cut(s) 360, 489, 505
Eco105I TACGTA 1 cut(s) 310
Eco130I CCWWGG 3 cut(s) 866, 959, 1241
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 1180
Eco47I GGWCC 1 cut(s) 1220
Eco57I CTGAAG 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 862
EcoRII CCWGG 3 cut(s) 1005, 1114, 1189
EcoT14I CCWWGG 3 cut(s) 866, 959, 1241
EcoT38I GRGCYC 1 cut(s) 865
ErhI CCWWGG 3 cut(s) 866, 959, 1241
FaeI CATG 7 cut(s) 226, 467, 575, 826, 870, 1093, 1169
FaqI GGGAC 1 cut(s) 983
FatI CATG 7 cut(s) 222, 463, 571, 822, 866, 1089, 1165
FauI CCCGC 1 cut(s) 1107
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 1 cut(s) 915
Fnu4HI GCNGC 4 cut(s) 16, 231, 747, 1160
FokI GGATG 4 cut(s) 870, 893, 998, 1133
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 4 cut(s) 16, 231, 747, 1160
FspBI CTAG 1 cut(s) 264
GluI GCNGC 4 cut(s) 16, 231, 747, 1160
HaeIII GGCC 2 cut(s) 415, 863
HapII CCGG 2 cut(s) 1106, 1223
Hin1II CATG 7 cut(s) 226, 467, 575, 826, 870, 1093, 1169
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
HinfI GANTC 5 cut(s) 73, 79, 424, 568, 871
HpaII CCGG 2 cut(s) 1106, 1223
HphI GGTGA 2 cut(s) 125, 1205
Hpy166II GTNNAC 3 cut(s) 83, 319, 321
Hpy188I TCNGA 7 cut(s) 72, 78, 198, 207, 683, 1185, 1236
Hpy188III TCNNGA 5 cut(s) 287, 464, 491, 647, 1166
Hpy8I GTNNAC 3 cut(s) 83, 319, 321
Hpy99I CGWCG 1 cut(s) 1078
HpyAV CCTTC 5 cut(s) 41, 193, 428, 493, 581
HpyCH4III ACNGT 2 cut(s) 252, 601
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 8 cut(s) 247, 550, 631, 740, 826, 906, 947, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 346, 737, 746, 1099
HpyF3I CTNAG 6 cut(s) 71, 90, 234, 714, 1046, 1184
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 7 cut(s) 226, 467, 575, 826, 870, 1093, 1169
Ksp22I TGATCA 1 cut(s) 915
Kzo9I GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
LmnI GCTCC 3 cut(s) 437, 473, 619
Lsp1109I GCAGC 4 cut(s) 2, 217, 758, 1146
LweI GCATC 4 cut(s) 618, 915, 940, 1111
MabI ACCWGGT 1 cut(s) 1189
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 38, 633, 936
MalI GATC 8 cut(s) 26, 132, 204, 333, 664, 917, 1028, 1233
MboI GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 801, 865
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 3 cut(s) 96, 409, 642
MluNI TGGCCA 1 cut(s) 415
MlyI GAGTC 3 cut(s) 82, 88, 880
MmeI TCCRAC 2 cut(s) 56, 102
Mox20I TGGCCA 1 cut(s) 415
MscI TGGCCA 1 cut(s) 415
MseI TTAA 3 cut(s) 282, 363, 641
MslI CAYNNNNRTG 2 cut(s) 856, 911
Msp20I TGGCCA 1 cut(s) 415
MspA1I CMGCKG 2 cut(s) 749, 778
MspI CCGG 2 cut(s) 1106, 1223
MspR9I CCNGG 3 cut(s) 1007, 1116, 1191
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 3 cut(s) 1007, 1116, 1191
MwoI GCNNNNNNNGC 4 cut(s) 346, 737, 746, 1099
NcoI CCATGG 1 cut(s) 866
NdeI CATATG 1 cut(s) 610
NdeII GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
NlaIII CATG 7 cut(s) 226, 467, 575, 826, 870, 1093, 1169
NlaIV GGNNCC 4 cut(s) 204, 475, 863, 864
NmuCI GTSAC 1 cut(s) 633
NspI RCATGY 2 cut(s) 226, 826
NspV TTCGAA 1 cut(s) 274
PagI TCATGA 2 cut(s) 463, 1165
PciI ACATGT 1 cut(s) 222
PfeI GAWTC 2 cut(s) 424, 568
PinAI ACCGGT 1 cut(s) 1222
PkrI GCNGC 4 cut(s) 17, 232, 748, 1161
PleI GAGTC 3 cut(s) 81, 87, 879
PpsI GAGTC 3 cut(s) 81, 87, 879
Ppu21I YACGTR 1 cut(s) 310
PscI ACATGT 1 cut(s) 222
Psp6I CCWGG 3 cut(s) 1005, 1114, 1189
PspGI CCWGG 3 cut(s) 1005, 1114, 1189
PspN4I GGNNCC 4 cut(s) 204, 475, 863, 864
PspOMI GGGCCC 1 cut(s) 861
PspPI GGNCC 3 cut(s) 861, 862, 1220
PsuI RGATCY 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 2 cut(s) 312, 320
RsaNI GTAC 2 cut(s) 311, 319
RseI CAYNNNNRTG 2 cut(s) 856, 911
SaqAI TTAA 3 cut(s) 282, 363, 641
SatI GCNGC 4 cut(s) 16, 231, 747, 1160
Sau3AI GATC 8 cut(s) 24, 130, 202, 331, 662, 915, 1026, 1231
Sau96I GGNCC 3 cut(s) 861, 862, 1220
SchI GAGTC 3 cut(s) 82, 88, 880
ScrFI CCNGG 3 cut(s) 1007, 1116, 1191
SduI GDGCHC 2 cut(s) 801, 865
SexAI ACCWGGT 1 cut(s) 1189
SfaNI GCATC 4 cut(s) 618, 915, 940, 1111
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 1 cut(s) 1220
SmiMI CAYNNNNRTG 2 cut(s) 856, 911
SnaBI TACGTA 1 cut(s) 310
Sse9I AATT 3 cut(s) 96, 409, 642
SsiI CCGC 2 cut(s) 776, 1100
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 3 cut(s) 1005, 1114, 1189
StyI CCWWGG 3 cut(s) 866, 959, 1241
TaaI ACNGT 2 cut(s) 252, 601
TaiI ACGT 1 cut(s) 312
TaqI TCGA 6 cut(s) 11, 53, 274, 661, 1025, 1076
TasI AATT 3 cut(s) 96, 409, 642
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 424, 568
Tru1I TTAA 3 cut(s) 282, 363, 641
Tru9I TTAA 3 cut(s) 282, 363, 641
TscAI CASTG 3 cut(s) 549, 604, 897
TseFI GTSAC 1 cut(s) 633
TseI GCWGC 4 cut(s) 15, 230, 746, 1159
Tsp45I GTSAC 1 cut(s) 633
TspDTI ATGAA 3 cut(s) 17, 1094, 1118
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 3 cut(s) 549, 604, 897
VpaK11BI GGWCC 1 cut(s) 1220
XapI RAATTY 1 cut(s) 96
XceI RCATGY 2 cut(s) 226, 826
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.