Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013973

Physical Location & Seq

Genomic Coordinates Forward (+)

59592866 .. 59596100

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGATTTTGGAAGTGGGTTTTTGCTGGGCTTGTTTGTGCTGCCTTGGTTGTGGAGATTGGTAATGGGGAGCAAGCTCGAACTGAGAGGATTTCAGGTAGTGCTGGTGATGTCTTGGATGATGATCCAGTGGGAAGGTTGAAAGTTTTTGTTTATGAGCTTCCAAGCAAATACAATAAGAAGATTCTGCAGAAGGACCCAAGATGCCTTAACCATATGTTTGCTGCTGAGATCTACATGCATCGTTTTCTCCTATCTAGCCCTGTCCGAACCCTTAATCCTGAGGAGGCTGATTGGTTTTATACTCCTGTGTACACCACTTGTGATCTGACCCCAAACGGCCTTCCTTTGCCTTTCAAGTCACCACGGATGATGAGAAGTGCAATACAACTTATTTCTTCAAATTGGCCTTATTGGAACCGCACTGAAGGGGCTGATCACTTTTTTGTGGTGCCTCATGACTTTGCAGCATGCTTTCATTATCAGGAAGAGAAGGCAATTGAGAGAGGAATTCTTCCCTTGCTCCAACGTGCAACCTTGGTTCAGACTTTTGGGCAACGGAATCATGTTTGCTTGAAAGAGGGCTCAATTACTGTTCCTCCATATGCCCCTCCGCAGAAAATGCAAACCCACCTAATTCCTGAGAAAACTCCTAGATCCATCTTTGTTTACTTCCGAGGACTATTTTATGATGTAGGAAATGATCCAGAAGGTGGCTATTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTCAAAGACAATCCGCTTTTTGACATTTCCACAGAGCATCCCACCACATACTATGAGGACATGCAACGTGCAGTCTTTTGTTTATGCCCACTTGGCTGGGCTCCTTGGAGCCCGAGATTGGTTGAAGCAGTGATTTTCGGTTGCATTCCTGTTATCATAGCAGATGACATTGTTCTACCCTTTGCTGATGCAATTCCATGGGAAGAAATTGGCGTGTTTATAGATGAGAAGGATGTTCCCAACTTGGACACCATACTCACTTCAATCCCACCAGAGCTGATACTGAGGAAGCAGAGATTACTTGCCAACCCTTCAATGAAGCAAGCTATGTTGTTCCCACAACCCGCCGAACCGGGTGATGCTTTTCATCAAGTTCTTAATGGACTAGCACGAAAATTGCCTCACGACCCTAGTGTTTACTTGAAGCCAGGTCAGAAGATCCTAAATTGGACCGCAGGTCCAGTTGGTGACCTCAAGCCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

413

Amino Acids

46.97

Weight (kDa)

6.09

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	46 - 341	8.8e-76	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61840
fragaria_vesca	FvH4_5g09690
malus_domestica	MD06G1129200.v1.1 MD14G1146200.v1.1
prunus_persica	Prupe.5G140500_v2.0.a1
pyrus_communis	pycom06g12080 pycom14g12110
rosa_chinensis	RchiOBHm_Chr7g0188551
rosa_laevigata	RLG00000004684
rosa_multiflora	Rmu_sc0001576.1_g000011 Rmu_sc0016427.1_g000011
rosa_roxburghii	Rroxscaffold_3G00266260
rosa_samantha	Rh7AG096100 Rh7BG097900 Rh7CG098900 Rh7DG098100
rosa_wichuraiana	Rw7G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1202
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	713
AciI	CCGC	5 cut(s)	421, 614, 770, 1101, 1209
AclWI	GGATC	4 cut(s)	119, 651, 698, 1189
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	713, 874
AgsI	TTSAA	9 cut(s)	142, 358, 402, 577, 760, 881, 1020, 1071, 1180
AhdI	GACNNNNNGTC	1 cut(s)	1212
AjnI	CCWGG	1 cut(s)	1183
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	4 cut(s)	77, 160, 1033, 1082
AluI	AGCT	4 cut(s)	77, 160, 1033, 1082
AlwI	GGATC	4 cut(s)	119, 651, 698, 1189
Ama87I	CYCGRG	1 cut(s)	868
AoxI	GGCC	2 cut(s)	340, 407
ApeKI	GCWGC	4 cut(s)	41, 224, 467, 740
ApoI	RAATTY	1 cut(s)	510
AspS9I	GGNCC	3 cut(s)	196, 1206, 1214
AsuC2I	CCSGG	1 cut(s)	1110
AsuHPI	GGTGA	4 cut(s)	119, 354, 1124, 1235
AvaI	CYCGRG	1 cut(s)	868
AvaII	GGWCC	3 cut(s)	196, 1206, 1214
AxyI	CCTNAGG	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	3 cut(s)	587, 859, 869
BbvI	GCAGC	4 cut(s)	28, 211, 479, 752
BccI	CCATC	1 cut(s)	668
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	1185
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	1110
BfaI	CTAG	4 cut(s)	258, 654, 1142, 1167
BfmI	CTRYAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	1202
BglI	GCCNNNNNGGC	1 cut(s)	849
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	4 cut(s)	42, 225, 468, 741
BlsI	GCNGC	4 cut(s)	43, 226, 469, 742
Bme1390I	CCNGG	2 cut(s)	1110, 1185
Bme18I	GGWCC	3 cut(s)	196, 1206, 1214
BmeRI	GACNNNNNGTC	1 cut(s)	1212
BmeT110I	CYCGRG	1 cut(s)	868
BmgT120I	GGNCC	3 cut(s)	196, 1206, 1214
BmiI	GGNNCC	5 cut(s)	198, 419, 453, 858, 866
BmrFI	CCNGG	2 cut(s)	1110, 1185
BmsI	GCATC	5 cut(s)	194, 250, 802, 934, 1105
BpuEI	CTTGAG	1 cut(s)	1214
BpuMI	CCSGG	1 cut(s)	1110
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	7 cut(s)	45, 365, 537, 676, 860, 953, 1235
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	713, 874
Bse1I	ACTGG	2 cut(s)	128, 1217
Bse21I	CCTNAGG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	1185
BseDI	CCNNGG	7 cut(s)	45, 365, 537, 676, 860, 953, 1235
BseGI	GGATG	4 cut(s)	124, 375, 793, 994
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	713, 874
BseMII	CTCAG	5 cut(s)	75, 219, 273, 633, 1031
BseNI	ACTGG	2 cut(s)	128, 1217
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	4 cut(s)	28, 211, 479, 752
BseYI	CCCAGC	2 cut(s)	26, 852
BsgI	GTGCAG	1 cut(s)	846
BshFI	GGCC	2 cut(s)	342, 409
BshNI	GGYRCC	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	868
BsiSI	CCGG	1 cut(s)	1109
BslI	CCNNNNNNNGG	2 cut(s)	713, 874
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	2 cut(s)	342, 409
BsoBI	CYCGRG	1 cut(s)	868
Bsp1286I	GDGCHC	3 cut(s)	587, 859, 869
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
Bsp19I	CCATGG	2 cut(s)	953, 1235
BspACI	CCGC	5 cut(s)	421, 614, 770, 1101, 1209
BspANI	GGCC	2 cut(s)	342, 409
BspCNI	CTCAG	5 cut(s)	76, 220, 274, 634, 1032
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	5 cut(s)	198, 419, 453, 858, 866
BspMAI	CTGCAG	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	1202
BspPI	GGATC	4 cut(s)	119, 651, 698, 1189
BspT107I	GGYRCC	1 cut(s)	451
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	128, 1217
BssECI	CCNNGG	7 cut(s)	45, 365, 537, 676, 860, 953, 1235
BssMI	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
BssT1I	CCWWGG	5 cut(s)	45, 537, 860, 953, 1235
Bst2UI	CCWGG	1 cut(s)	1185
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	483
BstAPI	GCANNNNNTGC	2 cut(s)	622, 731
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	3 cut(s)	75, 472, 1080
BstDEI	CTNAG	5 cut(s)	84, 228, 282, 642, 1040
BstDSI	CCRYGG	3 cut(s)	365, 953, 1235
BstEII	GGTNACC	1 cut(s)	1223
BstF5I	GGATG	4 cut(s)	124, 375, 793, 994
BstKTI	GATC	7 cut(s)	127, 234, 328, 439, 659, 706, 1197
BstMBI	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
BstMWI	GCNNNNNNNGC	4 cut(s)	622, 731, 740, 849
BstNI	CCWGG	1 cut(s)	1185
BstNSI	RCATGY	3 cut(s)	241, 474, 820
BstPI	GGTNACC	1 cut(s)	1223
BstSCI	CCNGG	2 cut(s)	1108, 1183
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	28, 211, 479, 752
BstX2I	RGATCY	3 cut(s)	231, 656, 1194
BstXI	CCANNNNNNTGG	1 cut(s)	852
BstYI	RGATCY	3 cut(s)	231, 656, 1194
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	342, 409
BtgI	CCRYGG	3 cut(s)	365, 953, 1235
BtsCI	GGATG	4 cut(s)	124, 375, 793, 994
BtsI	GCAGTG	2 cut(s)	750, 891
BtsIMutI	CAGTG	4 cut(s)	135, 423, 750, 891
BveI	ACCTGC	1 cut(s)	1202
Cac8I	GCNNGC	3 cut(s)	75, 472, 1080
CciI	TCATGA	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	196, 1206, 1214
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	7 cut(s)	238, 458, 471, 566, 817, 954, 1236
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	5 cut(s)	84, 228, 282, 642, 1040
DpnI	GATC	7 cut(s)	126, 233, 327, 438, 658, 705, 1196
DpnII	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
DriI	GACNNNNNGTC	1 cut(s)	1212
Eam1104I	CTCTTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	1212
EarI	CTCTTC	1 cut(s)	483
Eco130I	CCWWGG	5 cut(s)	45, 537, 860, 953, 1235
Eco24I	GRGCYC	3 cut(s)	587, 859, 869
Eco47I	GGWCC	3 cut(s)	196, 1206, 1214
Eco57I	CTGAAG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	868
Eco91I	GGTNACC	1 cut(s)	1223
EcoO109I	RGGNCCY	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	1223
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	1183
EcoT14I	CCWWGG	5 cut(s)	45, 537, 860, 953, 1235
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	3 cut(s)	587, 859, 869
ErhI	CCWWGG	5 cut(s)	45, 537, 860, 953, 1235
FaeI	CATG	7 cut(s)	241, 461, 474, 569, 820, 957, 1239
FatI	CATG	7 cut(s)	237, 457, 470, 565, 816, 953, 1235
FauI	CCCGC	1 cut(s)	1108
FauNDI	CATATG	2 cut(s)	216, 604
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	42, 225, 468, 741
FokI	GGATG	4 cut(s)	131, 382, 780, 1001
FriOI	GRGCYC	3 cut(s)	587, 859, 869
Fsp4HI	GCNGC	4 cut(s)	42, 225, 468, 741
FspBI	CTAG	4 cut(s)	258, 654, 1142, 1167
GluI	GCNGC	4 cut(s)	42, 225, 468, 741
GsaI	CCCAGC	2 cut(s)	30, 856
HaeIII	GGCC	2 cut(s)	342, 409
HapII	CCGG	1 cut(s)	1109
Hin1II	CATG	7 cut(s)	241, 461, 474, 569, 820, 957, 1239
HinfI	GANTC	2 cut(s)	184, 562
HpaII	CCGG	1 cut(s)	1109
HphI	GGTGA	4 cut(s)	119, 354, 1124, 1235
Hpy166II	GTNNAC	4 cut(s)	313, 315, 670, 1174
Hpy188I	TCNGA	5 cut(s)	269, 330, 546, 677, 1191
Hpy188III	TCNNGA	6 cut(s)	281, 458, 485, 641, 707, 1160
Hpy8I	GTNNAC	4 cut(s)	313, 315, 670, 1174
HpyAV	CCTTC	8 cut(s)	129, 187, 353, 422, 487, 704, 979, 1077
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	2 cut(s)	529, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	622, 731, 740, 849
HpyF3I	CTNAG	5 cut(s)	84, 228, 282, 642, 1040
HpySE526I	ACGT	2 cut(s)	529, 823
Hsp92II	CATG	7 cut(s)	241, 461, 474, 569, 820, 957, 1239
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
LmnI	GCTCC	4 cut(s)	70, 528, 862, 864
Lsp1109I	GCAGC	4 cut(s)	28, 211, 479, 752
LweI	GCATC	5 cut(s)	194, 250, 802, 934, 1105
MaeI	CTAG	4 cut(s)	258, 654, 1142, 1167
MaeII	ACGT	2 cut(s)	529, 823
MaeIII	GTNAC	2 cut(s)	360, 1223
MalI	GATC	7 cut(s)	126, 233, 327, 438, 658, 705, 1196
MboI	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
MboII	GAAGA	6 cut(s)	193, 390, 500, 506, 971, 1204
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	3 cut(s)	231, 656, 1194
MhlI	GDGCHC	3 cut(s)	587, 859, 869
MluCI	AATT	9 cut(s)	403, 498, 510, 588, 636, 948, 963, 1151, 1201
MmeI	TCCRAC	1 cut(s)	550
Mph1103I	ATGCAT	1 cut(s)	243
MseI	TTAA	3 cut(s)	210, 276, 1134
MspI	CCGG	1 cut(s)	1109
MspR9I	CCNGG	2 cut(s)	1110, 1185
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	1 cut(s)	1185
MwoI	GCNNNNNNNGC	4 cut(s)	622, 731, 740, 849
NciI	CCSGG	1 cut(s)	1110
NcoI	CCATGG	2 cut(s)	953, 1235
NdeI	CATATG	2 cut(s)	216, 604
NdeII	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
NlaIII	CATG	7 cut(s)	241, 461, 474, 569, 820, 957, 1239
NlaIV	GGNNCC	5 cut(s)	198, 419, 453, 858, 866
NmuCI	GTSAC	2 cut(s)	360, 1223
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	3 cut(s)	241, 474, 820
PaeI	GCATGC	1 cut(s)	474
PagI	TCATGA	1 cut(s)	457
PctI	GAATGC	1 cut(s)	900
PfeI	GAWTC	2 cut(s)	184, 562
PflMI	CCANNNNNTGG	1 cut(s)	713
PkrI	GCNGC	4 cut(s)	43, 226, 469, 742
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	1183
PspEI	GGTNACC	1 cut(s)	1223
PspFI	CCCAGC	2 cut(s)	26, 852
PspGI	CCWGG	1 cut(s)	1183
PspN4I	GGNNCC	5 cut(s)	198, 419, 453, 858, 866
PspPI	GGNCC	3 cut(s)	196, 1206, 1214
PspPPI	RGGWCCY	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	3 cut(s)	231, 656, 1194
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	3 cut(s)	210, 276, 1134
SatI	GCNGC	4 cut(s)	42, 225, 468, 741
Sau3AI	GATC	7 cut(s)	124, 231, 325, 436, 656, 703, 1194
Sau96I	GGNCC	3 cut(s)	196, 1206, 1214
ScrFI	CCNGG	2 cut(s)	1110, 1185
SduI	GDGCHC	3 cut(s)	587, 859, 869
SfaNI	GCATC	5 cut(s)	194, 250, 802, 934, 1105
SfcI	CTRYAG	1 cut(s)	188
SinI	GGWCC	3 cut(s)	196, 1206, 1214
SmlI	CTYRAG	1 cut(s)	1229
SmoI	CTYRAG	1 cut(s)	1229
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	9 cut(s)	403, 498, 510, 588, 636, 948, 963, 1151, 1201
SsiI	CCGC	5 cut(s)	421, 614, 770, 1101, 1209
SspMI	CTAG	4 cut(s)	258, 654, 1142, 1167
StyD4I	CCNGG	2 cut(s)	1108, 1183
StyI	CCWWGG	5 cut(s)	45, 537, 860, 953, 1235
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	2 cut(s)	532, 826
TaqI	TCGA	1 cut(s)	79
TasI	AATT	9 cut(s)	403, 498, 510, 588, 636, 948, 963, 1151, 1201
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	184, 562
Tru1I	TTAA	3 cut(s)	210, 276, 1134
Tru9I	TTAA	3 cut(s)	210, 276, 1134
TscAI	CASTG	4 cut(s)	135, 430, 750, 891
TseFI	GTSAC	2 cut(s)	360, 1223
TseI	GCWGC	4 cut(s)	41, 224, 467, 740
Tsp45I	GTSAC	2 cut(s)	360, 1223
TspDTI	ATGAA	3 cut(s)	467, 1088, 1112
TspGWI	ACGGA	2 cut(s)	382, 574
TspRI	CASTG	4 cut(s)	135, 430, 750, 891
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	3 cut(s)	196, 1206, 1214
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	3 cut(s)	241, 474, 820
XspI	CTAG	4 cut(s)	258, 654, 1142, 1167
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.