Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013973

Physical Location & Seq

Genomic Coordinates Reverse (-)

7323486 .. 7325962

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCTTTTGCAAAGGACTTGTCCTTTTGAAGTCTGTAGATTGTGTATAGATTCAGAATCCACCGAAAATTCAATTGTCTGTGAACTCAAGTATGCTTTGTTTATACTCAATGTAGGTAGTGCTGGTGATGTCTTGGATGATGATCCAGTGGGAAGGTTGAAAGTTTTTGTTTATGAGCTTCCAAGCAAATACAATAAGAAGATTCTGCAGAAGGACCCGAGATGCCTTAACCATATGTTTGCTGCTGAGATCTACATGCATCGTTTTCTCCTATCTAGCCCTGTCCGAACCCTTAATCCTGAGGAGGCTGATTGGTTTTATACTCCTGTATACACCACTTGTGATCTGACCCCAAACGGCCTTCCTTTGCCTTTCAAGTCACCACGGATGATGAGAAGTGCAATACAACTTATTTCTTCAAATTGGCCTTATTGGAACCGCACCGAAGGGGCTGATCACTTTTTTGTGGTGCCTCATGACTTTGCAGCATGCTTTCATTATCAGGAAGAGAAGGCAATTGAAAGAGGAATTCTTCCCTTGCTCCAACGTGCAACCTTGGTTCAGACTTTTGGGCAACGGAATCATGTTTGCTTGAAAGAGGGCTCAATCACTGTTCCTCCATATGCCCCTCCGCAGAAAATGCAGACCCACCTAATTCCTGAGAAAACTCCTAGATCCATCTTTGTTTACTTCCGAGGACTATTTTATGATGTAGGAAATGATCCAGAAGGTGGCTATTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTCAAAGACAATCCGCTTTTTGACATTTCCACAGAGCATCCCACCACATACTATGAGGACATGCAACGTGCAGTCTTTTGTTTATGCCCACTTGGCTGGGCTCCTTGGAGCCCGAGATTGGTTGAAGCAGTGATTTTCGGTTGCATTCCTGTTATCATAGCAGATGACATTGTTCTACCCTTTGCTGATGCAATTCCATGGGAAGAAATTGGTGTGTTTATAGATGAGAAGGATGTTCCCGACTTGGACACCATACTCACTTCAATCCCACCAGAGCTGATACTGAGGAAGCAGAGATTACTTGCCAACCCTTCAATGAAGCAAGCTATGTTGTTCCCACAACCCGCCGAACCGGGTGATGCTTTTCATCAAGTTCTTAATGGACTAGCACGAAAATTGCCTCACGACCCTAGTGTTTACTTGAAGCCAGGTCAGAAGATCCTAAATTGGACCGCAGGTCCAGTTGGTGACCTCAAGCCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

419

Amino Acids

47.73

Weight (kDa)

5.63

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	52 - 347	9.3e-76	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61840
fragaria_vesca	FvH4_5g09690
malus_domestica	MD06G1129200.v1.1 MD14G1146200.v1.1
prunus_persica	Prupe.5G140500_v2.0.a1
pyrus_communis	pycom06g12080 pycom14g12110
rosa_chinensis	RchiOBHm_Chr7g0188551
rosa_laevigata	RLG00000004684
rosa_multiflora	Rmu_sc0001576.1_g000011 Rmu_sc0016427.1_g000011
rosa_roxburghii	Rroxscaffold_3G00266260
rosa_samantha	Rh7AG096100 Rh7BG097900 Rh7CG098900 Rh7DG098100
rosa_wichuraiana	Rw7G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1220
AccB1I	GGYRCC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	5 cut(s)	439, 632, 788, 1119, 1227
AclWI	GGATC	4 cut(s)	137, 669, 716, 1207
AcsI	RAATTY	2 cut(s)	67, 528
AfiI	CCNNNNNNNGG	2 cut(s)	731, 892
AhdI	GACNNNNNGTC	1 cut(s)	1230
AjnI	CCWGG	1 cut(s)	1201
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	3 cut(s)	178, 1051, 1100
AluI	AGCT	3 cut(s)	178, 1051, 1100
AlwI	GGATC	4 cut(s)	137, 669, 716, 1207
Ama87I	CYCGRG	2 cut(s)	217, 886
AoxI	GGCC	2 cut(s)	358, 425
ApeKI	GCWGC	3 cut(s)	242, 485, 758
ApoI	RAATTY	2 cut(s)	67, 528
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspS9I	GGNCC	3 cut(s)	214, 1224, 1232
AsuC2I	CCSGG	1 cut(s)	1128
AsuHPI	GGTGA	4 cut(s)	137, 372, 1142, 1253
AvaI	CYCGRG	2 cut(s)	217, 886
AvaII	GGWCC	3 cut(s)	214, 1224, 1232
AxyI	CCTNAGG	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	3 cut(s)	605, 877, 887
BbvI	GCAGC	3 cut(s)	229, 497, 770
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	1203
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	1128
BfaI	CTAG	4 cut(s)	276, 672, 1160, 1185
BfmI	CTRYAG	2 cut(s)	34, 206
BfuAI	ACCTGC	1 cut(s)	1220
BglI	GCCNNNNNGGC	1 cut(s)	867
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	3 cut(s)	243, 486, 759
BlsI	GCNGC	3 cut(s)	244, 487, 760
Bme1390I	CCNGG	2 cut(s)	1128, 1203
Bme18I	GGWCC	3 cut(s)	214, 1224, 1232
BmeRI	GACNNNNNGTC	1 cut(s)	1230
BmeT110I	CYCGRG	2 cut(s)	217, 886
BmgT120I	GGNCC	3 cut(s)	214, 1224, 1232
BmiI	GGNNCC	5 cut(s)	216, 437, 471, 876, 884
BmrFI	CCNGG	2 cut(s)	1128, 1203
BmsI	GCATC	5 cut(s)	212, 268, 820, 952, 1123
BpuEI	CTTGAG	2 cut(s)	71, 1232
BpuMI	CCSGG	1 cut(s)	1128
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	6 cut(s)	383, 555, 694, 878, 971, 1253
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	731, 892
Bse1I	ACTGG	2 cut(s)	146, 1235
Bse21I	CCTNAGG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	1203
BseDI	CCNNGG	6 cut(s)	383, 555, 694, 878, 971, 1253
BseGI	GGATG	4 cut(s)	142, 393, 811, 1012
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	731, 892
BseMII	CTCAG	4 cut(s)	237, 291, 651, 1049
BseNI	ACTGG	2 cut(s)	146, 1235
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	229, 497, 770
BseYI	CCCAGC	1 cut(s)	870
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	2 cut(s)	360, 427
BshNI	GGYRCC	1 cut(s)	469
BsiHKCI	CYCGRG	2 cut(s)	217, 886
BsiSI	CCGG	1 cut(s)	1127
BslI	CCNNNNNNNGG	2 cut(s)	731, 892
BsmI	GAATGC	1 cut(s)	918
BsnI	GGCC	2 cut(s)	360, 427
BsoBI	CYCGRG	2 cut(s)	217, 886
Bsp1286I	GDGCHC	3 cut(s)	605, 877, 887
Bsp143I	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	5 cut(s)	439, 632, 788, 1119, 1227
BspANI	GGCC	2 cut(s)	360, 427
BspCNI	CTCAG	4 cut(s)	238, 292, 652, 1050
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	5 cut(s)	216, 437, 471, 876, 884
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	1220
BspPI	GGATC	4 cut(s)	137, 669, 716, 1207
BspT107I	GGYRCC	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	146, 1235
BssECI	CCNNGG	6 cut(s)	383, 555, 694, 878, 971, 1253
BssMI	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
BssNAI	GTATAC	1 cut(s)	331
BssT1I	CCWWGG	4 cut(s)	555, 878, 971, 1253
Bst1107I	GTATAC	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	1203
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	2 cut(s)	640, 749
BstC8I	GCNNGC	2 cut(s)	490, 1098
BstDEI	CTNAG	4 cut(s)	246, 300, 660, 1058
BstDSI	CCRYGG	2 cut(s)	383, 971
BstEII	GGTNACC	1 cut(s)	1241
BstF5I	GGATG	4 cut(s)	142, 393, 811, 1012
BstKTI	GATC	7 cut(s)	145, 252, 346, 457, 677, 724, 1215
BstMBI	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
BstMWI	GCNNNNNNNGC	4 cut(s)	640, 749, 758, 867
BstNI	CCWGG	1 cut(s)	1203
BstNSI	RCATGY	3 cut(s)	259, 492, 838
BstPI	GGTNACC	1 cut(s)	1241
BstSCI	CCNGG	2 cut(s)	1126, 1201
BstSFI	CTRYAG	2 cut(s)	34, 206
BstV1I	GCAGC	3 cut(s)	229, 497, 770
BstX2I	RGATCY	3 cut(s)	249, 674, 1212
BstXI	CCANNNNNNTGG	1 cut(s)	870
BstYI	RGATCY	3 cut(s)	249, 674, 1212
BstZ17I	GTATAC	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	360, 427
BtgI	CCRYGG	2 cut(s)	383, 971
BtsCI	GGATG	4 cut(s)	142, 393, 811, 1012
BtsI	GCAGTG	2 cut(s)	768, 909
BtsIMutI	CAGTG	4 cut(s)	153, 609, 768, 909
BveI	ACCTGC	1 cut(s)	1220
Cac8I	GCNNGC	2 cut(s)	490, 1098
CciI	TCATGA	1 cut(s)	475
Cfr13I	GGNCC	3 cut(s)	214, 1224, 1232
CviAII	CATG	6 cut(s)	256, 476, 489, 584, 835, 972
DdeI	CTNAG	4 cut(s)	246, 300, 660, 1058
DpnI	GATC	7 cut(s)	144, 251, 345, 456, 676, 723, 1214
DpnII	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
DriI	GACNNNNNGTC	1 cut(s)	1230
Eam1104I	CTCTTC	1 cut(s)	501
Eam1105I	GACNNNNNGTC	1 cut(s)	1230
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	4 cut(s)	555, 878, 971, 1253
Eco24I	GRGCYC	3 cut(s)	605, 877, 887
Eco47I	GGWCC	3 cut(s)	214, 1224, 1232
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	217, 886
Eco91I	GGTNACC	1 cut(s)	1241
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	1241
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	1201
EcoT14I	CCWWGG	4 cut(s)	555, 878, 971, 1253
EcoT22I	ATGCAT	1 cut(s)	261
EcoT38I	GRGCYC	3 cut(s)	605, 877, 887
ErhI	CCWWGG	4 cut(s)	555, 878, 971, 1253
FaeI	CATG	6 cut(s)	259, 479, 492, 587, 838, 975
FatI	CATG	6 cut(s)	255, 475, 488, 583, 834, 971
FauI	CCCGC	1 cut(s)	1126
FauNDI	CATATG	2 cut(s)	234, 622
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	243, 486, 759
FokI	GGATG	4 cut(s)	149, 400, 798, 1019
FriOI	GRGCYC	3 cut(s)	605, 877, 887
Fsp4HI	GCNGC	3 cut(s)	243, 486, 759
FspBI	CTAG	4 cut(s)	276, 672, 1160, 1185
GluI	GCNGC	3 cut(s)	243, 486, 759
GsaI	CCCAGC	1 cut(s)	874
HaeIII	GGCC	2 cut(s)	360, 427
HapII	CCGG	1 cut(s)	1127
Hin1II	CATG	6 cut(s)	259, 479, 492, 587, 838, 975
HinfI	GANTC	4 cut(s)	50, 56, 202, 580
HpaII	CCGG	1 cut(s)	1127
HphI	GGTGA	4 cut(s)	137, 372, 1142, 1253
Hpy166II	GTNNAC	4 cut(s)	83, 331, 688, 1192
Hpy188I	TCNGA	6 cut(s)	55, 287, 348, 564, 695, 1209
Hpy188III	TCNNGA	7 cut(s)	299, 476, 503, 659, 725, 1013, 1178
Hpy8I	GTNNAC	4 cut(s)	83, 331, 688, 1192
HpyAV	CCTTC	8 cut(s)	147, 205, 371, 440, 505, 722, 997, 1095
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	547, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	640, 749, 758, 867
HpyF3I	CTNAG	4 cut(s)	246, 300, 660, 1058
HpySE526I	ACGT	2 cut(s)	547, 841
Hsp92II	CATG	6 cut(s)	259, 479, 492, 587, 838, 975
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
LmnI	GCTCC	3 cut(s)	546, 880, 882
Lsp1109I	GCAGC	3 cut(s)	229, 497, 770
LweI	GCATC	5 cut(s)	212, 268, 820, 952, 1123
MaeI	CTAG	4 cut(s)	276, 672, 1160, 1185
MaeII	ACGT	2 cut(s)	547, 841
MaeIII	GTNAC	2 cut(s)	378, 1241
MalI	GATC	7 cut(s)	144, 251, 345, 456, 676, 723, 1214
MboI	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
MboII	GAAGA	6 cut(s)	211, 408, 518, 524, 989, 1222
MfeI	CAATTG	2 cut(s)	72, 516
MflI	RGATCY	3 cut(s)	249, 674, 1212
MhlI	GDGCHC	3 cut(s)	605, 877, 887
MmeI	TCCRAC	1 cut(s)	568
Mph1103I	ATGCAT	1 cut(s)	261
MseI	TTAA	3 cut(s)	228, 294, 1152
MspI	CCGG	1 cut(s)	1127
MspR9I	CCNGG	2 cut(s)	1128, 1203
MunI	CAATTG	2 cut(s)	72, 516
Mva1269I	GAATGC	1 cut(s)	918
MvaI	CCWGG	1 cut(s)	1203
MwoI	GCNNNNNNNGC	4 cut(s)	640, 749, 758, 867
NciI	CCSGG	1 cut(s)	1128
NcoI	CCATGG	1 cut(s)	971
NdeI	CATATG	2 cut(s)	234, 622
NdeII	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
NlaIII	CATG	6 cut(s)	259, 479, 492, 587, 838, 975
NlaIV	GGNNCC	5 cut(s)	216, 437, 471, 876, 884
NmuCI	GTSAC	2 cut(s)	378, 1241
NsiI	ATGCAT	1 cut(s)	261
NspI	RCATGY	3 cut(s)	259, 492, 838
PaeI	GCATGC	1 cut(s)	492
PagI	TCATGA	1 cut(s)	475
PctI	GAATGC	1 cut(s)	918
PfeI	GAWTC	4 cut(s)	50, 56, 202, 580
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	3 cut(s)	244, 487, 760
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	1201
PspEI	GGTNACC	1 cut(s)	1241
PspFI	CCCAGC	1 cut(s)	870
PspGI	CCWGG	1 cut(s)	1201
PspN4I	GGNNCC	5 cut(s)	216, 437, 471, 876, 884
PspPI	GGNCC	3 cut(s)	214, 1224, 1232
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	210
PsuI	RGATCY	3 cut(s)	249, 674, 1212
SaqAI	TTAA	3 cut(s)	228, 294, 1152
SatI	GCNGC	3 cut(s)	243, 486, 759
Sau3AI	GATC	7 cut(s)	142, 249, 343, 454, 674, 721, 1212
Sau96I	GGNCC	3 cut(s)	214, 1224, 1232
ScrFI	CCNGG	2 cut(s)	1128, 1203
SduI	GDGCHC	3 cut(s)	605, 877, 887
SfaNI	GCATC	5 cut(s)	212, 268, 820, 952, 1123
SfcI	CTRYAG	2 cut(s)	34, 206
SinI	GGWCC	3 cut(s)	214, 1224, 1232
SmlI	CTYRAG	2 cut(s)	86, 1247
SmoI	CTYRAG	2 cut(s)	86, 1247
SphI	GCATGC	1 cut(s)	492
SsiI	CCGC	5 cut(s)	439, 632, 788, 1119, 1227
SspMI	CTAG	4 cut(s)	276, 672, 1160, 1185
StyD4I	CCNGG	2 cut(s)	1126, 1201
StyI	CCWWGG	4 cut(s)	555, 878, 971, 1253
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	550, 844
TfiI	GAWTC	4 cut(s)	50, 56, 202, 580
Tru1I	TTAA	3 cut(s)	228, 294, 1152
Tru9I	TTAA	3 cut(s)	228, 294, 1152
TscAI	CASTG	4 cut(s)	153, 616, 768, 909
TseFI	GTSAC	2 cut(s)	378, 1241
TseI	GCWGC	3 cut(s)	242, 485, 758
Tsp45I	GTSAC	2 cut(s)	378, 1241
TspDTI	ATGAA	3 cut(s)	485, 1106, 1130
TspGWI	ACGGA	2 cut(s)	400, 592
TspRI	CASTG	4 cut(s)	153, 616, 768, 909
Van91I	CCANNNNNTGG	1 cut(s)	731
VpaK11BI	GGWCC	3 cut(s)	214, 1224, 1232
XapI	RAATTY	2 cut(s)	67, 528
XceI	RCATGY	3 cut(s)	259, 492, 838
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	4 cut(s)	276, 672, 1160, 1185
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.