Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013973

Physical Location & Seq

Genomic Coordinates Reverse (-)

7228482 .. 7233674

Gene Structure 5193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG097900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAGACGAGTTTTGGTCAGCTCGACCAATTCATTGCTGTTTTTCAGTGCTGGTGATGTCTTGGATGATGATCCAGTGGGAAGGTTGAAAGTTTTTGTTTATGAGCTTCCAAGCAAATACAATAAGAAGATTCTGCAGAAGGACCCGAGATGCCTTAACCATATGTTTGCTGCTGAGATCTACATGCATCGTTTTCTCCTATCTAGCCCTGTCCGAACCCTTAATCCTGAGGAGGCTGATTGGTTTTATACTCCTGTATACACCACTTGTGATTTGACCCCAAACGGCCTTCCTTTGCCTTTCAAGTCACCACGGATGATGAGAAGTGCAATACAACTTATTTCTTCAAATTGGCCTTATTGGAACCGCACCGAAGGGGCTGATCACTTTTTTGTGGTGCCTCATGACTTTGCAGCATGCTTTCATTATCAGGAAGAGAAGGCAATTGAAAGAGGAATTCTTCCCTTGCTCCAACGTGCAACCTTGGTTCAGACTTTTGGGCAACGGAATCATGTTTGCTTGAAAGAGGGCTCAATTACTGTTCCTCCATATGCCCCTCCGCAGAAAATGCAGACCCACCTAATTCCTGAGAAAACTCCTAGATCCATCTTTGTTTACTTCCGAGGACTATTTTATGATGTAGGAAATGATCCAGAAGGTGGCTATTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTCAAAGACAATCCGCTTTTTGACATTTCCACAGAGCATCCCACCACATACTATGAGGACATGCAACGTGCAGTCTTTTGTTTATGCCCACTTGGCTGGGCTCCTTGGAGCCCGAGATTGGTTGAAGCAGTGATTTTCGGTTGCATTCCTGTTATCATAGCAGATGACATTGTTCTACCCTTTGCTGATGCAATTCCATGGGAAGAAATTGGCGTGTTTATAGATGAGAAGGATGTTCCCAACTTGGACACCATACTCACTTCAATCCCACCAGAGCTGATACTGAGGAAGCAGAGATTACTTGCCAACCCTTCAATGAAGCAAGCTATGTTGTTCCCACAACCCGCCGAACCGGGTGATGCTTTTCATCAAGTTCTTAATGGACTAGCACGAAAATTGCCTCACGACCCTAGTGTTTACTTGAAGCCAGGTCAGAAGATCCTAAATTGGACCGCAGGTCCAGTTGGTGACCTCAAGCCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

395

Amino Acids

45.05

Weight (kDa)

6.22

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	28 - 323	7.6e-76	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61840
fragaria_vesca	FvH4_5g09690
malus_domestica	MD06G1129200.v1.1 MD14G1146200.v1.1
prunus_persica	Prupe.5G140500_v2.0.a1
pyrus_communis	pycom06g12080 pycom14g12110
rosa_chinensis	RchiOBHm_Chr7g0188551
rosa_laevigata	RLG00000004684
rosa_multiflora	Rmu_sc0001576.1_g000011 Rmu_sc0016427.1_g000011
rosa_roxburghii	Rroxscaffold_3G00266260
rosa_samantha	Rh7AG096100 Rh7BG097900 Rh7CG098900 Rh7DG098100
rosa_wichuraiana	Rw7G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1148
AccB1I	GGYRCC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	5 cut(s)	367, 560, 716, 1047, 1155
AclWI	GGATC	4 cut(s)	65, 597, 644, 1135
AcsI	RAATTY	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	659, 820
AhdI	GACNNNNNGTC	1 cut(s)	1158
AjnI	CCWGG	1 cut(s)	1129
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	4 cut(s)	21, 106, 979, 1028
AluI	AGCT	4 cut(s)	21, 106, 979, 1028
AlwI	GGATC	4 cut(s)	65, 597, 644, 1135
Ama87I	CYCGRG	2 cut(s)	145, 814
AoxI	GGCC	2 cut(s)	286, 353
ApeKI	GCWGC	3 cut(s)	170, 413, 686
ApoI	RAATTY	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	142, 1152, 1160
AsuC2I	CCSGG	1 cut(s)	1056
AsuHPI	GGTGA	4 cut(s)	65, 300, 1070, 1181
AvaI	CYCGRG	2 cut(s)	145, 814
AvaII	GGWCC	3 cut(s)	142, 1152, 1160
AxyI	CCTNAGG	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	3 cut(s)	533, 805, 815
BbvI	GCAGC	3 cut(s)	157, 425, 698
BccI	CCATC	1 cut(s)	614
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	1131
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	1056
BfaI	CTAG	4 cut(s)	204, 600, 1088, 1113
BfmI	CTRYAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	1148
BglI	GCCNNNNNGGC	1 cut(s)	795
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	3 cut(s)	171, 414, 687
BlsI	GCNGC	3 cut(s)	172, 415, 688
Bme1390I	CCNGG	2 cut(s)	1056, 1131
Bme18I	GGWCC	3 cut(s)	142, 1152, 1160
BmeRI	GACNNNNNGTC	1 cut(s)	1158
BmeT110I	CYCGRG	2 cut(s)	145, 814
BmgT120I	GGNCC	3 cut(s)	142, 1152, 1160
BmiI	GGNNCC	5 cut(s)	144, 365, 399, 804, 812
BmrFI	CCNGG	2 cut(s)	1056, 1131
BmsI	GCATC	5 cut(s)	140, 196, 748, 880, 1051
BpuEI	CTTGAG	1 cut(s)	1160
BpuMI	CCSGG	1 cut(s)	1056
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	6 cut(s)	311, 483, 622, 806, 899, 1181
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 820
Bse1I	ACTGG	2 cut(s)	74, 1163
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	1131
BseDI	CCNNGG	6 cut(s)	311, 483, 622, 806, 899, 1181
BseGI	GGATG	4 cut(s)	70, 321, 739, 940
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	659, 820
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	4 cut(s)	165, 219, 579, 977
BseNI	ACTGG	2 cut(s)	74, 1163
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	157, 425, 698
BseYI	CCCAGC	1 cut(s)	798
BsgI	GTGCAG	1 cut(s)	792
BshFI	GGCC	2 cut(s)	288, 355
BshNI	GGYRCC	1 cut(s)	397
BsiHKCI	CYCGRG	2 cut(s)	145, 814
BsiSI	CCGG	1 cut(s)	1055
BslI	CCNNNNNNNGG	2 cut(s)	659, 820
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	2 cut(s)	288, 355
BsoBI	CYCGRG	2 cut(s)	145, 814
Bsp1286I	GDGCHC	3 cut(s)	533, 805, 815
Bsp143I	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
Bsp19I	CCATGG	1 cut(s)	899
BspACI	CCGC	5 cut(s)	367, 560, 716, 1047, 1155
BspANI	GGCC	2 cut(s)	288, 355
BspCNI	CTCAG	4 cut(s)	166, 220, 580, 978
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	5 cut(s)	144, 365, 399, 804, 812
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	1148
BspPI	GGATC	4 cut(s)	65, 597, 644, 1135
BspT107I	GGYRCC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	74, 1163
BssECI	CCNNGG	6 cut(s)	311, 483, 622, 806, 899, 1181
BssMI	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
BssNAI	GTATAC	1 cut(s)	259
BssT1I	CCWWGG	4 cut(s)	483, 806, 899, 1181
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	1131
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	429
BstAPI	GCANNNNNTGC	2 cut(s)	568, 677
BstC8I	GCNNGC	2 cut(s)	418, 1026
BstDEI	CTNAG	4 cut(s)	174, 228, 588, 986
BstDSI	CCRYGG	2 cut(s)	311, 899
BstEII	GGTNACC	1 cut(s)	1169
BstF5I	GGATG	4 cut(s)	70, 321, 739, 940
BstKTI	GATC	6 cut(s)	73, 180, 385, 605, 652, 1143
BstMBI	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
BstMWI	GCNNNNNNNGC	4 cut(s)	568, 677, 686, 795
BstNI	CCWGG	1 cut(s)	1131
BstNSI	RCATGY	3 cut(s)	187, 420, 766
BstPI	GGTNACC	1 cut(s)	1169
BstSCI	CCNGG	2 cut(s)	1054, 1129
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	157, 425, 698
BstX2I	RGATCY	3 cut(s)	177, 602, 1140
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstYI	RGATCY	3 cut(s)	177, 602, 1140
BstZ17I	GTATAC	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	288, 355
BtgI	CCRYGG	2 cut(s)	311, 899
BtsCI	GGATG	4 cut(s)	70, 321, 739, 940
BtsI	GCAGTG	2 cut(s)	696, 837
BtsIMutI	CAGTG	4 cut(s)	52, 81, 696, 837
BveI	ACCTGC	1 cut(s)	1148
Cac8I	GCNNGC	2 cut(s)	418, 1026
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	3 cut(s)	142, 1152, 1160
CviAII	CATG	6 cut(s)	184, 404, 417, 512, 763, 900
DdeI	CTNAG	4 cut(s)	174, 228, 588, 986
DpnI	GATC	6 cut(s)	72, 179, 384, 604, 651, 1142
DpnII	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
DriI	GACNNNNNGTC	1 cut(s)	1158
Eam1104I	CTCTTC	1 cut(s)	429
Eam1105I	GACNNNNNGTC	1 cut(s)	1158
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	4 cut(s)	483, 806, 899, 1181
Eco24I	GRGCYC	3 cut(s)	533, 805, 815
Eco47I	GGWCC	3 cut(s)	142, 1152, 1160
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	2 cut(s)	145, 814
Eco91I	GGTNACC	1 cut(s)	1169
EcoO109I	RGGNCCY	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	1169
EcoRI	GAATTC	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	1129
EcoT14I	CCWWGG	4 cut(s)	483, 806, 899, 1181
EcoT22I	ATGCAT	1 cut(s)	189
EcoT38I	GRGCYC	3 cut(s)	533, 805, 815
ErhI	CCWWGG	4 cut(s)	483, 806, 899, 1181
FaeI	CATG	6 cut(s)	187, 407, 420, 515, 766, 903
FatI	CATG	6 cut(s)	183, 403, 416, 511, 762, 899
FauI	CCCGC	1 cut(s)	1054
FauNDI	CATATG	2 cut(s)	162, 550
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	171, 414, 687
FokI	GGATG	4 cut(s)	77, 328, 726, 947
FriOI	GRGCYC	3 cut(s)	533, 805, 815
Fsp4HI	GCNGC	3 cut(s)	171, 414, 687
FspBI	CTAG	4 cut(s)	204, 600, 1088, 1113
GluI	GCNGC	3 cut(s)	171, 414, 687
GsaI	CCCAGC	1 cut(s)	802
HaeIII	GGCC	2 cut(s)	288, 355
HapII	CCGG	1 cut(s)	1055
Hin1II	CATG	6 cut(s)	187, 407, 420, 515, 766, 903
HinfI	GANTC	2 cut(s)	130, 508
HpaII	CCGG	1 cut(s)	1055
HphI	GGTGA	4 cut(s)	65, 300, 1070, 1181
Hpy166II	GTNNAC	3 cut(s)	259, 616, 1120
Hpy188I	TCNGA	4 cut(s)	215, 492, 623, 1137
Hpy188III	TCNNGA	6 cut(s)	227, 404, 431, 587, 653, 1106
Hpy8I	GTNNAC	3 cut(s)	259, 616, 1120
HpyAV	CCTTC	8 cut(s)	75, 133, 299, 368, 433, 650, 925, 1023
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	2 cut(s)	475, 769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	568, 677, 686, 795
HpyF3I	CTNAG	4 cut(s)	174, 228, 588, 986
HpySE526I	ACGT	2 cut(s)	475, 769
Hsp92II	CATG	6 cut(s)	187, 407, 420, 515, 766, 903
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
LmnI	GCTCC	3 cut(s)	474, 808, 810
Lsp1109I	GCAGC	3 cut(s)	157, 425, 698
LweI	GCATC	5 cut(s)	140, 196, 748, 880, 1051
MaeI	CTAG	4 cut(s)	204, 600, 1088, 1113
MaeII	ACGT	2 cut(s)	475, 769
MaeIII	GTNAC	2 cut(s)	306, 1169
MalI	GATC	6 cut(s)	72, 179, 384, 604, 651, 1142
MboI	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
MboII	GAAGA	6 cut(s)	139, 336, 446, 452, 917, 1150
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	3 cut(s)	177, 602, 1140
MhlI	GDGCHC	3 cut(s)	533, 805, 815
MmeI	TCCRAC	1 cut(s)	496
Mph1103I	ATGCAT	1 cut(s)	189
MseI	TTAA	3 cut(s)	156, 222, 1080
MspI	CCGG	1 cut(s)	1055
MspR9I	CCNGG	2 cut(s)	1056, 1131
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	1131
MwoI	GCNNNNNNNGC	4 cut(s)	568, 677, 686, 795
NciI	CCSGG	1 cut(s)	1056
NcoI	CCATGG	1 cut(s)	899
NdeI	CATATG	2 cut(s)	162, 550
NdeII	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
NlaIII	CATG	6 cut(s)	187, 407, 420, 515, 766, 903
NlaIV	GGNNCC	5 cut(s)	144, 365, 399, 804, 812
NmuCI	GTSAC	2 cut(s)	306, 1169
NsiI	ATGCAT	1 cut(s)	189
NspI	RCATGY	3 cut(s)	187, 420, 766
PaeI	GCATGC	1 cut(s)	420
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	130, 508
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	3 cut(s)	172, 415, 688
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	1129
PspEI	GGTNACC	1 cut(s)	1169
PspFI	CCCAGC	1 cut(s)	798
PspGI	CCWGG	1 cut(s)	1129
PspN4I	GGNNCC	5 cut(s)	144, 365, 399, 804, 812
PspPI	GGNCC	3 cut(s)	142, 1152, 1160
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	3 cut(s)	177, 602, 1140
SaqAI	TTAA	3 cut(s)	156, 222, 1080
SatI	GCNGC	3 cut(s)	171, 414, 687
Sau3AI	GATC	6 cut(s)	70, 177, 382, 602, 649, 1140
Sau96I	GGNCC	3 cut(s)	142, 1152, 1160
ScrFI	CCNGG	2 cut(s)	1056, 1131
SduI	GDGCHC	3 cut(s)	533, 805, 815
SfaNI	GCATC	5 cut(s)	140, 196, 748, 880, 1051
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	142, 1152, 1160
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
SphI	GCATGC	1 cut(s)	420
SsiI	CCGC	5 cut(s)	367, 560, 716, 1047, 1155
SspMI	CTAG	4 cut(s)	204, 600, 1088, 1113
StyD4I	CCNGG	2 cut(s)	1054, 1129
StyI	CCWWGG	4 cut(s)	483, 806, 899, 1181
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	2 cut(s)	478, 772
TaqI	TCGA	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	130, 508
Tru1I	TTAA	3 cut(s)	156, 222, 1080
Tru9I	TTAA	3 cut(s)	156, 222, 1080
TscAI	CASTG	4 cut(s)	52, 81, 696, 837
TseFI	GTSAC	2 cut(s)	306, 1169
TseI	GCWGC	3 cut(s)	170, 413, 686
Tsp45I	GTSAC	2 cut(s)	306, 1169
TspDTI	ATGAA	4 cut(s)	21, 413, 1034, 1058
TspGWI	ACGGA	2 cut(s)	328, 520
TspRI	CASTG	4 cut(s)	52, 81, 696, 837
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	3 cut(s)	142, 1152, 1160
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	3 cut(s)	187, 420, 766
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	4 cut(s)	204, 600, 1088, 1113
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.