RLG00000004684

beta-1,4-xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013973
Physical Location & Seq
Forward (+)
61437019 .. 61439001
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004684

Sequence Viewer

Length: 1173 bp
ATGGTTGAGGACCCATCTAGTAATGCTGGTAGTGCTGGTGATGTCTTGGATGATGATCCAGTGGGAAGGTTGAAAGTTTTTGTTTATGAGCTTCCAAGCAAATACAATAAGAAGATTCTGCAGAAGGACCCGAGATGCCTTAACCATATGTTTGCTGCTGAGATCTACATGCATCGTTTTCTCCTATCTAGCCCTGTGCGAACCCTTAATCCTGAGGAGGCTGATTGGTTTTATACTCCTGTATACACCACTTGTGATCTGACCCCAAACGGCCTTCCTTTGCCTTTCAAGTCACCACGGATGATGAGAAGTGCAATACAACTTATTTCTTCAAATTGGCCTTATTGGAACCGCACCGAAGGGGCTGATCACTTTTTTGTGGTGCCTCATGACTTTGCAGCATGCTTTCATTATCAGGAAGAGAAGGCAATTGAAAGAGGAATTCTTCCCTTGCTCCAACGTGCAACCTTGGTTCAGACTTTTGGGCAACGGAATCATGTTTGCTTGAAAGAGGGCTCAATTACTGTTCCTCCATATGCCCCTCCGCAGAAAATGCAGACCCACCTAATTCCTGAGAAAACTCCTAGATCTATCTTTGTTTACTTCCGAGGACTATTTTATGATGTAGGAAATGATCCAGAAGGTGGCTATTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTCAAAGACAATCCACTTTTTGACATTTCCACAGAGCATCCCACCACATACTATGAGGACATGCAACGTGCAGTCTTTTGTTTATGCCCGCTTGGCTGGGCTCCTTGGAGCCCGAGATTGGTTGAAGCAGTGATTTTCGGTTGCATTCCTGTTATCATAGCAGATGACATTGTTCTACCCTTTGCTGATGCAATTCCATGGGAAGAAATTGGCGTGTTTATAGATGAGAAGGATGTTCCCAACTTGGACACCATACTCACTTCAATCCCACCAGAGCTGATACTGAGGAAGCAGAGATTACTTGCCAACCCTTCAATGAAGCAAGCTATGTTGTTCCCACAACCCGCTGAACCGGGTGATGCTTTCCATCAAGTTCTTAATGGACTAGCACGAAAATTGCCTCACGACCCTAGTGTTTACTTGAAGCCAGGTCAGAAGATCCTAAATTGGACCGCAGGTCCAGTTGGTGACCTCAAGCCTTGGTAA

Protein Analysis

391

Amino Acids

44.28

Weight (kDa)

5.72

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 23 - 318 7.3e-76 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013973)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61840
fragaria_vesca FvH4_5g09690
malus_domestica MD06G1129200.v1.1 MD14G1146200.v1.1
prunus_persica Prupe.5G140500_v2.0.a1
pyrus_communis pycom06g12080 pycom14g12110
rosa_chinensis RchiOBHm_Chr7g0188551
rosa_laevigata RLG00000004684
rosa_multiflora Rmu_sc0001576.1_g000011 Rmu_sc0016427.1_g000011
rosa_roxburghii Rroxscaffold_3G00266260
rosa_samantha Rh7AG096100 Rh7BG097900 Rh7CG098900 Rh7DG098100
rosa_wichuraiana Rw7G008300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1133
AccB1I GGYRCC 1 cut(s) 382
AccB7I CCANNNNNTGG 1 cut(s) 644
AccI GTMKAC 1 cut(s) 243
AciI CCGC 5 cut(s) 352, 545, 776, 1032, 1140
AclWI GGATC 3 cut(s) 50, 629, 1120
AcsI RAATTY 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 644, 805
AhdI GACNNNNNGTC 1 cut(s) 1143
AjnI CCWGG 1 cut(s) 1114
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 3 cut(s) 91, 964, 1013
AluI AGCT 3 cut(s) 91, 964, 1013
AlwI GGATC 3 cut(s) 50, 629, 1120
Ama87I CYCGRG 2 cut(s) 130, 799
AoxI GGCC 2 cut(s) 271, 338
ApeKI GCWGC 3 cut(s) 155, 398, 671
ApoI RAATTY 1 cut(s) 441
AspS9I GGNCC 4 cut(s) 10, 127, 1137, 1145
AsuC2I CCSGG 1 cut(s) 1041
AsuHPI GGTGA 4 cut(s) 50, 285, 1055, 1166
AvaI CYCGRG 2 cut(s) 130, 799
AvaII GGWCC 4 cut(s) 10, 127, 1137, 1145
AxyI CCTNAGG 1 cut(s) 213
BanI GGYRCC 1 cut(s) 382
BanII GRGCYC 3 cut(s) 518, 790, 800
BbvI GCAGC 3 cut(s) 142, 410, 683
BccI CCATC 2 cut(s) 22, 1062
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 1116
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 1041
BfaI CTAG 5 cut(s) 18, 189, 585, 1073, 1098
BfmI CTRYAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 1133
BglI GCCNNNNNGGC 1 cut(s) 780
BglII AGATCT 2 cut(s) 162, 587
BisI GCNGC 3 cut(s) 156, 399, 672
BlsI GCNGC 3 cut(s) 157, 400, 673
Bme1390I CCNGG 2 cut(s) 1041, 1116
Bme18I GGWCC 4 cut(s) 10, 127, 1137, 1145
BmeRI GACNNNNNGTC 1 cut(s) 1143
BmeT110I CYCGRG 2 cut(s) 130, 799
BmgT120I GGNCC 4 cut(s) 10, 127, 1137, 1145
BmiI GGNNCC 6 cut(s) 12, 129, 350, 384, 789, 797
BmrFI CCNGG 2 cut(s) 1041, 1116
BmsI GCATC 5 cut(s) 125, 181, 733, 865, 1036
BpuEI CTTGAG 1 cut(s) 1145
BpuMI CCSGG 1 cut(s) 1041
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 6 cut(s) 296, 468, 607, 791, 884, 1166
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 805
Bse1I ACTGG 2 cut(s) 59, 1148
Bse21I CCTNAGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 1116
BseDI CCNNGG 6 cut(s) 296, 468, 607, 791, 884, 1166
BseGI GGATG 4 cut(s) 55, 306, 724, 925
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 644, 805
BseMII CTCAG 4 cut(s) 150, 204, 564, 962
BseNI ACTGG 2 cut(s) 59, 1148
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 3 cut(s) 142, 410, 683
BseYI CCCAGC 1 cut(s) 783
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 2 cut(s) 273, 340
BshNI GGYRCC 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 130, 799
BsiSI CCGG 1 cut(s) 1040
BslI CCNNNNNNNGG 2 cut(s) 644, 805
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 2 cut(s) 273, 340
BsoBI CYCGRG 2 cut(s) 130, 799
Bsp1286I GDGCHC 3 cut(s) 518, 790, 800
Bsp143I GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
Bsp19I CCATGG 1 cut(s) 884
BspACI CCGC 5 cut(s) 352, 545, 776, 1032, 1140
BspANI GGCC 2 cut(s) 273, 340
BspCNI CTCAG 4 cut(s) 151, 205, 565, 963
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 6 cut(s) 12, 129, 350, 384, 789, 797
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 1133
BspPI GGATC 3 cut(s) 50, 629, 1120
BspT107I GGYRCC 1 cut(s) 382
BsrI ACTGG 2 cut(s) 59, 1148
BssECI CCNNGG 6 cut(s) 296, 468, 607, 791, 884, 1166
BssMI GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
BssNAI GTATAC 1 cut(s) 244
BssT1I CCWWGG 4 cut(s) 468, 791, 884, 1166
Bst1107I GTATAC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 1116
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 2 cut(s) 553, 662
BstC8I GCNNGC 3 cut(s) 403, 776, 1011
BstDEI CTNAG 4 cut(s) 159, 213, 573, 971
BstDSI CCRYGG 2 cut(s) 296, 884
BstEII GGTNACC 1 cut(s) 1154
BstF5I GGATG 4 cut(s) 55, 306, 724, 925
BstKTI GATC 7 cut(s) 58, 165, 259, 370, 590, 637, 1128
BstMBI GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
BstMWI GCNNNNNNNGC 5 cut(s) 32, 553, 662, 671, 780
BstNI CCWGG 1 cut(s) 1116
BstNSI RCATGY 3 cut(s) 172, 405, 751
BstPI GGTNACC 1 cut(s) 1154
BstSCI CCNGG 2 cut(s) 1039, 1114
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 142, 410, 683
BstX2I RGATCY 3 cut(s) 162, 587, 1125
BstYI RGATCY 3 cut(s) 162, 587, 1125
BstZ17I GTATAC 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 273, 340
BtgI CCRYGG 2 cut(s) 296, 884
BtsCI GGATG 4 cut(s) 55, 306, 724, 925
BtsI GCAGTG 2 cut(s) 681, 822
BtsIMutI CAGTG 3 cut(s) 66, 681, 822
BveI ACCTGC 1 cut(s) 1133
Cac8I GCNNGC 3 cut(s) 403, 776, 1011
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 4 cut(s) 10, 127, 1137, 1145
CviAII CATG 6 cut(s) 169, 389, 402, 497, 748, 885
DdeI CTNAG 4 cut(s) 159, 213, 573, 971
DpnI GATC 7 cut(s) 57, 164, 258, 369, 589, 636, 1127
DpnII GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
DriI GACNNNNNGTC 1 cut(s) 1143
Eam1104I CTCTTC 1 cut(s) 414
Eam1105I GACNNNNNGTC 1 cut(s) 1143
EarI CTCTTC 1 cut(s) 414
Eco130I CCWWGG 4 cut(s) 468, 791, 884, 1166
Eco24I GRGCYC 3 cut(s) 518, 790, 800
Eco47I GGWCC 4 cut(s) 10, 127, 1137, 1145
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 130, 799
Eco91I GGTNACC 1 cut(s) 1154
EcoO109I RGGNCCY 2 cut(s) 10, 127
EcoO65I GGTNACC 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 1114
EcoT14I CCWWGG 4 cut(s) 468, 791, 884, 1166
EcoT22I ATGCAT 1 cut(s) 174
EcoT38I GRGCYC 3 cut(s) 518, 790, 800
ErhI CCWWGG 4 cut(s) 468, 791, 884, 1166
FaeI CATG 6 cut(s) 172, 392, 405, 500, 751, 888
FatI CATG 6 cut(s) 168, 388, 401, 496, 747, 884
FauI CCCGC 2 cut(s) 783, 1039
FauNDI CATATG 2 cut(s) 147, 535
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 156, 399, 672
FokI GGATG 4 cut(s) 62, 313, 711, 932
FriOI GRGCYC 3 cut(s) 518, 790, 800
Fsp4HI GCNGC 3 cut(s) 156, 399, 672
FspBI CTAG 5 cut(s) 18, 189, 585, 1073, 1098
GluI GCNGC 3 cut(s) 156, 399, 672
GsaI CCCAGC 1 cut(s) 787
HaeIII GGCC 2 cut(s) 273, 340
HapII CCGG 1 cut(s) 1040
Hin1II CATG 6 cut(s) 172, 392, 405, 500, 751, 888
HinfI GANTC 2 cut(s) 115, 493
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 4 cut(s) 50, 285, 1055, 1166
Hpy166II GTNNAC 3 cut(s) 244, 601, 1105
Hpy188I TCNGA 4 cut(s) 261, 477, 608, 1122
Hpy188III TCNNGA 6 cut(s) 212, 389, 416, 572, 638, 1091
Hpy8I GTNNAC 3 cut(s) 244, 601, 1105
HpyAV CCTTC 8 cut(s) 60, 118, 284, 353, 418, 635, 910, 1008
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 2 cut(s) 460, 754
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 553, 662, 671, 780
HpyF3I CTNAG 4 cut(s) 159, 213, 573, 971
HpySE526I ACGT 2 cut(s) 460, 754
Hsp92II CATG 6 cut(s) 172, 392, 405, 500, 751, 888
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
LmnI GCTCC 3 cut(s) 459, 793, 795
Lsp1109I GCAGC 3 cut(s) 142, 410, 683
LweI GCATC 5 cut(s) 125, 181, 733, 865, 1036
MaeI CTAG 5 cut(s) 18, 189, 585, 1073, 1098
MaeII ACGT 2 cut(s) 460, 754
MaeIII GTNAC 2 cut(s) 291, 1154
MalI GATC 7 cut(s) 57, 164, 258, 369, 589, 636, 1127
MboI GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
MboII GAAGA 6 cut(s) 124, 321, 431, 437, 902, 1135
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 3 cut(s) 162, 587, 1125
MhlI GDGCHC 3 cut(s) 518, 790, 800
MluCI AATT 9 cut(s) 334, 429, 441, 519, 567, 879, 894, 1082, 1132
MmeI TCCRAC 1 cut(s) 481
Mph1103I ATGCAT 1 cut(s) 174
MseI TTAA 3 cut(s) 141, 207, 1065
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 2 cut(s) 1041, 1116
MunI CAATTG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 831
MvaI CCWGG 1 cut(s) 1116
MwoI GCNNNNNNNGC 5 cut(s) 32, 553, 662, 671, 780
NciI CCSGG 1 cut(s) 1041
NcoI CCATGG 1 cut(s) 884
NdeI CATATG 2 cut(s) 147, 535
NdeII GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
NlaIII CATG 6 cut(s) 172, 392, 405, 500, 751, 888
NlaIV GGNNCC 6 cut(s) 12, 129, 350, 384, 789, 797
NmuCI GTSAC 2 cut(s) 291, 1154
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 3 cut(s) 172, 405, 751
PaeI GCATGC 1 cut(s) 405
PagI TCATGA 1 cut(s) 388
PctI GAATGC 1 cut(s) 831
PfeI GAWTC 2 cut(s) 115, 493
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 3 cut(s) 157, 400, 673
PpuMI RGGWCCY 2 cut(s) 10, 127
Psp5II RGGWCCY 2 cut(s) 10, 127
Psp6I CCWGG 1 cut(s) 1114
PspEI GGTNACC 1 cut(s) 1154
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 1 cut(s) 1114
PspN4I GGNNCC 6 cut(s) 12, 129, 350, 384, 789, 797
PspPI GGNCC 4 cut(s) 10, 127, 1137, 1145
PspPPI RGGWCCY 2 cut(s) 10, 127
PstI CTGCAG 1 cut(s) 123
PsuI RGATCY 3 cut(s) 162, 587, 1125
SaqAI TTAA 3 cut(s) 141, 207, 1065
SatI GCNGC 3 cut(s) 156, 399, 672
Sau3AI GATC 7 cut(s) 55, 162, 256, 367, 587, 634, 1125
Sau96I GGNCC 4 cut(s) 10, 127, 1137, 1145
ScrFI CCNGG 2 cut(s) 1041, 1116
SduI GDGCHC 3 cut(s) 518, 790, 800
SfaNI GCATC 5 cut(s) 125, 181, 733, 865, 1036
SfcI CTRYAG 1 cut(s) 119
SinI GGWCC 4 cut(s) 10, 127, 1137, 1145
SmlI CTYRAG 1 cut(s) 1160
SmoI CTYRAG 1 cut(s) 1160
SphI GCATGC 1 cut(s) 405
Sse9I AATT 9 cut(s) 334, 429, 441, 519, 567, 879, 894, 1082, 1132
SsiI CCGC 5 cut(s) 352, 545, 776, 1032, 1140
SspMI CTAG 5 cut(s) 18, 189, 585, 1073, 1098
StyD4I CCNGG 2 cut(s) 1039, 1114
StyI CCWWGG 4 cut(s) 468, 791, 884, 1166
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 2 cut(s) 463, 757
TasI AATT 9 cut(s) 334, 429, 441, 519, 567, 879, 894, 1082, 1132
TfiI GAWTC 2 cut(s) 115, 493
Tru1I TTAA 3 cut(s) 141, 207, 1065
Tru9I TTAA 3 cut(s) 141, 207, 1065
TscAI CASTG 3 cut(s) 66, 681, 822
TseFI GTSAC 2 cut(s) 291, 1154
TseI GCWGC 3 cut(s) 155, 398, 671
Tsp45I GTSAC 2 cut(s) 291, 1154
TspDTI ATGAA 2 cut(s) 398, 1019
TspGWI ACGGA 2 cut(s) 313, 505
TspRI CASTG 3 cut(s) 66, 681, 822
Van91I CCANNNNNTGG 1 cut(s) 644
VpaK11BI GGWCC 4 cut(s) 10, 127, 1137, 1145
XapI RAATTY 1 cut(s) 441
XceI RCATGY 3 cut(s) 172, 405, 751
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 5 cut(s) 18, 189, 585, 1073, 1098
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.