AT5G61850

DNA Binding Domain (C-terminal) Leafy/Floricaula

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
24844248 .. 24846989
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61850.1

Sequence Viewer

Length: 1263 bp
ATGGATCCTGAAGGTTTCACGAGTGGCTTATTCCGGTGGAACCCAACGAGAGCATTGGTTCAAGCACCACCTCCGGTTCCACCTCCGCTGCAGCAACAGCCGGTGACACCGCAGACGGCTGCTTTTGGGATGCGACTTGGTGGTTTAGAGGGACTATTCGGTCCGTACGGTATACGTTTCTACACGGCGGCGAAGATAGCGGAGTTAGGTTTTACGGCGAGCACGCTTGTGGGTATGAAGGACGAGGAGCTTGAAGAGATGATGAATAGTCTCTCTCATATCTTTCGTTGGGAGCTTCTTGTTGGTGAACGGTACGGTATCAAAGCTGCCGTTAGAGCTGAACGGAGACGATTGCAAGAAGAGGAGGAAGAGGAATCTTCTAGACGCCGTCATTTGCTACTCTCCGCCGCTGGTGATTCCGGTACTCATCACGCTCTTGATGCTCTCTCCCAAGAAGGGTTATCTGAGGAACCGGTGCAGCAACAAGACCAGACTGATGCGGCGGGGAATAACGGCGGAGGAGGAAGTGGTTACTGGGACGCAGGTCAAGGAAAGATGAAGAAGCAACAGCAGCAGAGACGGAGAAAGAAACCAATGCTGACGTCAGTGGAAACCGACGAAGACGTCAACGAAGGTGAGGATGACGACGGGATGGATAACGGCAACGGAGGTAGTGGTTTGGGGACAGAGAGACAGAGGGAGCATCCGTTTATCGTAACGGAGCCTGGGGAAGTGGCACGTGGCAAAAAGAACGGCTTAGATTATCTGTTCCACTTGTACGAACAATGCCGTGAGTTCCTTCTTCAGGTCCAGACAATTGCTAAAGACCGTGGCGAAAAATGCCCCACCAAGGTGACGAACCAAGTATTCAGGTACGCGAAGAAATCAGGAGCGAGTTACATAAACAAGCCTAAAATGCGACACTACGTTCACTGTTACGCTCTCCACTGCCTAGACGAAGAAGCTTCAAATGCTCTCAGAAGAGCGTTTAAAGAACGCGGTGAGAACGTTGGCTCATGGCGTCAGGCTTGTTACAAGCCACTTGTGAACATCGCTTGTCGTCATGGCTGGGATATAGACGCCGTCTTTAACGCTCATCCTCGTCTCTCTATTTGGTATGTTCCAACAAAGCTGCGTCAGCTTTGCCATTTGGAGCGGAACAATGCGGTTGCTGCGGCTGCGGCTTTAGTTGGCGGTATTAGCTGTACCGGATCGTCGACGTCTGGACGTGGTGGATGCGGCGGCGACGACTTGCGTTTCTAG

Protein Analysis

420

Amino Acids

46.58

Weight (kDa)

6.65

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_LFY PF01698 45 - 123 5e-44 Floricaula / Leafy protein SAM domain
C_LFY_FLO PF17538 225 - 389 1.7e-107 DNA Binding Domain (C-terminal) Leafy/Floricaula
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 159, 623
AatII GACGTC 3 cut(s) 605, 627, 1223
Acc36I ACCTGC 1 cut(s) 533
AccBSI CCGCTC 1 cut(s) 1156
AccI GTMKAC 2 cut(s) 172, 1217
AccII CGCG 2 cut(s) 878, 999
AclI AACGTT 1 cut(s) 1008
AclWI GGATC 2 cut(s) 12, 1219
AcuI CTGAAG 2 cut(s) 30, 788
AcvI CACGTG 1 cut(s) 740
AcyI GRCGYC 6 cut(s) 385, 602, 624, 1021, 1080, 1220
AfaI GTAC 6 cut(s) 167, 314, 424, 779, 875, 1207
AfiI CCNNNNNNNGG 3 cut(s) 456, 805, 850
AgeI ACCGGT 1 cut(s) 472
AgsI TTSAA 3 cut(s) 62, 254, 969
AjiI CACGTC 1 cut(s) 1229
AjnI CCWGG 1 cut(s) 724
AleI CACNNNNGTG 2 cut(s) 227, 851
AluBI AGCT 8 cut(s) 250, 295, 326, 338, 965, 1132, 1141, 1203
AluI AGCT 8 cut(s) 250, 295, 326, 338, 965, 1132, 1141, 1203
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 5 cut(s) 275, 340, 571, 685, 1109
AlwI GGATC 2 cut(s) 12, 1219
ApeKI GCWGC 9 cut(s) 88, 91, 119, 326, 478, 571, 1132, 1172, 1178
AsiGI ACCGGT 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 161, 808
AsuHPI GGTGA 6 cut(s) 115, 317, 425, 647, 865, 1013
AvaII GGWCC 2 cut(s) 161, 808
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 19
BbrPI CACGTG 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 9 cut(s) 75, 103, 106, 313, 490, 583, 1119, 1159, 1165
BccI CCATC 1 cut(s) 646
BciT130I CCWGG 1 cut(s) 726
BcoDI GTCTC 5 cut(s) 275, 340, 571, 685, 1109
BfaI CTAG 3 cut(s) 381, 953, 1261
BfmI CTRYAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 2 cut(s) 161, 808
BmgBI CACGTC 1 cut(s) 1229
BmgT120I GGNCC 2 cut(s) 161, 808
BmiI GGNNCC 5 cut(s) 6, 41, 78, 471, 723
BmrFI CCNGG 1 cut(s) 726
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 5 cut(s) 120, 430, 487, 712, 1226
BmuI ACTGGG 1 cut(s) 544
BoxI GACNNNNGTC 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 740
BsaHI GRCGYC 6 cut(s) 385, 602, 624, 1021, 1080, 1220
BsaJI CCNNGG 3 cut(s) 725, 829, 849
BsaWI WCCGGW 5 cut(s) 33, 73, 419, 472, 1208
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 805, 850
Bse118I RCCGGY 2 cut(s) 100, 472
Bse1I ACTGG 1 cut(s) 539
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 725, 829, 849
BseGI GGATG 6 cut(s) 135, 646, 657, 703, 1096, 1241
BseLI CCNNNNNNNGG 3 cut(s) 456, 805, 850
BseMII CTCAG 2 cut(s) 456, 991
BseNI ACTGG 1 cut(s) 539
BseRI GAGGAG 3 cut(s) 260, 377, 534
BseXI GCAGC 9 cut(s) 75, 103, 106, 313, 490, 583, 1119, 1159, 1165
BseYI CCCAGC 1 cut(s) 1068
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 2 cut(s) 878, 999
BshTI ACCGGT 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 6 cut(s) 34, 74, 101, 420, 473, 1209
BsiWI CGTACG 1 cut(s) 165
BslFI GGGAC 3 cut(s) 165, 551, 697
BslI CCNNNNNNNGG 3 cut(s) 456, 805, 850
BsmAI GTCTC 5 cut(s) 275, 340, 571, 685, 1109
BsmBI CGTCTC 3 cut(s) 340, 571, 1109
BsmFI GGGAC 3 cut(s) 165, 551, 697
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 4, 1211
BspCNI CTCAG 2 cut(s) 457, 990
BspFNI CGCG 2 cut(s) 878, 999
BspLI GGNNCC 5 cut(s) 6, 41, 78, 471, 723
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 533
BspPI GGATC 2 cut(s) 12, 1219
BspQI GCTCTTC 1 cut(s) 976
BsrBI CCGCTC 1 cut(s) 1156
BsrFI RCCGGY 2 cut(s) 100, 472
BsrI ACTGG 1 cut(s) 539
BssAI RCCGGY 2 cut(s) 100, 472
BssECI CCNNGG 3 cut(s) 725, 829, 849
BssMI GATC 2 cut(s) 4, 1211
BssNAI GTATAC 1 cut(s) 173
BssNI GRCGYC 6 cut(s) 385, 602, 624, 1021, 1080, 1220
BssSI CACGAG 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 849
Bst1107I GTATAC 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 5 cut(s) 170, 312, 317, 830, 935
Bst6I CTCTTC 4 cut(s) 249, 354, 363, 976
BstACI GRCGYC 6 cut(s) 385, 602, 624, 1021, 1080, 1220
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 220, 224
BstDEI CTNAG 3 cut(s) 465, 757, 977
BstDSI CCRYGG 1 cut(s) 829
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 6 cut(s) 135, 646, 657, 703, 1096, 1241
BstFNI CGCG 2 cut(s) 878, 999
BstKTI GATC 2 cut(s) 7, 1214
BstMAI GTCTC 5 cut(s) 275, 340, 571, 685, 1109
BstMBI GATC 2 cut(s) 4, 1211
BstNI CCWGG 1 cut(s) 726
BstPAI GACNNNNGTC 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 724
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 2 cut(s) 878, 999
BstV1I GCAGC 9 cut(s) 75, 103, 106, 313, 490, 583, 1119, 1159, 1165
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZ17I GTATAC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 829
BtgZI GCGATG 1 cut(s) 1036
BtrI CACGTC 1 cut(s) 1229
BtsCI GGATG 6 cut(s) 135, 646, 657, 703, 1096, 1241
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 3 cut(s) 612, 931, 946
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 220, 224
Cfr10I RCCGGY 2 cut(s) 100, 472
Cfr13I GGNCC 2 cut(s) 161, 808
CpoI CGGWCCG 1 cut(s) 161
CseI GACGC 5 cut(s) 393, 548, 1010, 1088, 1124
Csp6I GTAC 6 cut(s) 166, 313, 423, 778, 874, 1206
CspAI ACCGGT 1 cut(s) 472
CspI CGGWCCG 1 cut(s) 161
CviAII CATG 2 cut(s) 1017, 1064
CviQI GTAC 6 cut(s) 166, 313, 423, 778, 874, 1206
DdeI CTNAG 3 cut(s) 465, 757, 977
DpnI GATC 2 cut(s) 6, 1213
DpnII GATC 2 cut(s) 4, 1211
DraI TTTAAA 1 cut(s) 991
DrdI GACNNNNNNGTC 2 cut(s) 159, 623
DseDI GACNNNNNNGTC 2 cut(s) 159, 623
Eam1104I CTCTTC 4 cut(s) 249, 354, 363, 976
EarI CTCTTC 4 cut(s) 249, 354, 363, 976
EciI GGCGGA 2 cut(s) 394, 531
Eco130I CCWWGG 1 cut(s) 849
Eco47I GGWCC 2 cut(s) 161, 808
Eco57I CTGAAG 2 cut(s) 30, 788
Eco72I CACGTG 1 cut(s) 740
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 849
Esp3I CGTCTC 3 cut(s) 340, 571, 1109
FaeI CATG 2 cut(s) 1020, 1067
FaiI YATR 8 cut(s) 173, 236, 279, 902, 1018, 1065, 1076, 1119
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 3 cut(s) 165, 551, 697
FatI CATG 2 cut(s) 1016, 1063
FauI CCCGC 1 cut(s) 496
FblI GTMKAC 2 cut(s) 172, 1217
FokI GGATG 6 cut(s) 142, 653, 664, 690, 1083, 1248
FspBI CTAG 3 cut(s) 381, 953, 1261
GsaI CCCAGC 1 cut(s) 1072
HapII CCGG 6 cut(s) 34, 74, 101, 420, 473, 1209
HgaI GACGC 5 cut(s) 393, 548, 1010, 1088, 1124
Hin1I GRCGYC 6 cut(s) 385, 602, 624, 1021, 1080, 1220
Hin1II CATG 2 cut(s) 1020, 1067
HincII GTYRAC 2 cut(s) 628, 1218
HindII GTYRAC 2 cut(s) 628, 1218
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 2 cut(s) 374, 416
HpaII CCGG 6 cut(s) 34, 74, 101, 420, 473, 1209
HphI GGTGA 6 cut(s) 115, 317, 425, 647, 865, 1013
Hpy166II GTNNAC 6 cut(s) 173, 308, 628, 931, 1048, 1218
Hpy188I TCNGA 2 cut(s) 466, 980
Hpy188III TCNNGA 7 cut(s) 8, 19, 381, 437, 811, 888, 1224
Hpy8I GTNNAC 6 cut(s) 173, 308, 628, 931, 1048, 1218
Hpy99I CGWCG 5 cut(s) 620, 650, 1219, 1222, 1250
HpyAV CCTTC 5 cut(s) 5, 232, 449, 626, 809
HpyCH4III ACNGT 5 cut(s) 170, 312, 317, 830, 935
HpyCH4IV ACGT 8 cut(s) 175, 602, 624, 739, 927, 1008, 1220, 1228
HpyCH4V TGCA 3 cut(s) 91, 355, 478
HpyF3I CTNAG 3 cut(s) 465, 757, 977
HpySE526I ACGT 8 cut(s) 175, 602, 624, 739, 927, 1008, 1220, 1228
Hsp92I GRCGYC 6 cut(s) 385, 602, 624, 1021, 1080, 1220
Hsp92II CATG 2 cut(s) 1020, 1067
Kzo9I GATC 2 cut(s) 4, 1211
LguI GCTCTTC 1 cut(s) 976
LmnI GCTCC 6 cut(s) 247, 292, 700, 721, 890, 1153
Lsp1109I GCAGC 9 cut(s) 75, 103, 106, 313, 490, 583, 1119, 1159, 1165
LweI GCATC 5 cut(s) 120, 430, 487, 712, 1226
MaeI CTAG 3 cut(s) 381, 953, 1261
MaeII ACGT 8 cut(s) 175, 602, 624, 739, 927, 1008, 1220, 1228
MaeIII GTNAC 7 cut(s) 103, 530, 715, 853, 896, 935, 1031
MalI GATC 2 cut(s) 6, 1213
MbiI CCGCTC 1 cut(s) 1156
MboI GATC 2 cut(s) 4, 1211
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 816
MmeI TCCRAC 1 cut(s) 1148
MseI TTAA 2 cut(s) 990, 1089
MslI CAYNNNNRTG 2 cut(s) 227, 851
MspA1I CMGCKG 2 cut(s) 88, 410
MspI CCGG 6 cut(s) 34, 74, 101, 420, 473, 1209
MspR9I CCNGG 1 cut(s) 726
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 2 cut(s) 878, 999
NdeII GATC 2 cut(s) 4, 1211
NlaIII CATG 2 cut(s) 1020, 1067
NlaIV GGNNCC 5 cut(s) 6, 41, 78, 471, 723
NmuCI GTSAC 2 cut(s) 103, 853
OliI CACNNNNGTG 2 cut(s) 227, 851
PciSI GCTCTTC 1 cut(s) 976
PfeI GAWTC 2 cut(s) 374, 416
Pfl23II CGTACG 1 cut(s) 165
PflFI GACNNNGTC 2 cut(s) 387, 1082
PinAI ACCGGT 1 cut(s) 472
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
Ppu21I YACGTR 1 cut(s) 740
PshAI GACNNNNGTC 1 cut(s) 543
Psp1406I AACGTT 1 cut(s) 1008
Psp6I CCWGG 1 cut(s) 724
PspCI CACGTG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 1068
PspGI CCWGG 1 cut(s) 724
PspLI CGTACG 1 cut(s) 165
PspN4I GGNNCC 5 cut(s) 6, 41, 78, 471, 723
PspPI GGNCC 2 cut(s) 161, 808
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 2 cut(s) 387, 1082
RsaI GTAC 6 cut(s) 167, 314, 424, 779, 875, 1207
RsaNI GTAC 6 cut(s) 166, 313, 423, 778, 874, 1206
RseI CAYNNNNRTG 2 cut(s) 227, 851
Rsr2I CGGWCCG 1 cut(s) 161
RsrII CGGWCCG 1 cut(s) 161
SalI GTCGAC 1 cut(s) 1216
SapI GCTCTTC 1 cut(s) 976
SaqAI TTAA 2 cut(s) 990, 1089
Sau3AI GATC 2 cut(s) 4, 1211
Sau96I GGNCC 2 cut(s) 161, 808
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 5 cut(s) 120, 430, 487, 712, 1226
SfcI CTRYAG 1 cut(s) 89
SgrDI CGTCGACG 1 cut(s) 1216
SinI GGWCC 2 cut(s) 161, 808
SmiMI CAYNNNNRTG 2 cut(s) 227, 851
Sse9I AATT 1 cut(s) 816
SspMI CTAG 3 cut(s) 381, 953, 1261
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 5 cut(s) 170, 312, 317, 830, 935
TaiI ACGT 8 cut(s) 178, 605, 627, 742, 930, 1011, 1223, 1231
TaqI TCGA 1 cut(s) 1217
TaqII GACCGA 1 cut(s) 149
TasI AATT 1 cut(s) 816
TauI GCSGC 7 cut(s) 191, 410, 503, 1178, 1184, 1242, 1245
TfiI GAWTC 2 cut(s) 374, 416
Tru1I TTAA 2 cut(s) 990, 1089
Tru9I TTAA 2 cut(s) 990, 1089
TscAI CASTG 3 cut(s) 612, 938, 953
TseFI GTSAC 2 cut(s) 103, 853
TseI GCWGC 9 cut(s) 88, 91, 119, 326, 478, 571, 1132, 1172, 1178
Tsp45I GTSAC 2 cut(s) 103, 853
TspDTI ATGAA 3 cut(s) 251, 278, 572
TspGWI ACGGA 6 cut(s) 153, 358, 595, 681, 696, 734
TspRI CASTG 3 cut(s) 612, 938, 953
Tth111I GACNNNGTC 2 cut(s) 387, 1082
VpaK11BI GGWCC 2 cut(s) 161, 808
XagI CCTNNNNNAGG 1 cut(s) 803
XbaI TCTAGA 1 cut(s) 380
XmiI GTMKAC 2 cut(s) 172, 1217
XspI CTAG 3 cut(s) 381, 953, 1261
ZraI GACGTC 3 cut(s) 603, 625, 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.