MD14G1146700.v1.1

Floricaula leafy homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
23939375 .. 23942918
3544 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1146700.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGGATCCAGATGCCTTCTCTGCGAACTTGTTCAAGTGGGGCCTACGAGGCATGGTTGTGCCGACGAACCGGGTTCAGCTGGAAGCAGCCGTGCCACCAGCAGCGGCAGCTGCTGCTGCGGCGGCTGGTTGTACTTTGCGGCCGCCAGGTGAGCTTGGACTTGGAGGACTTGAGGATTTGTTCCAGGCATATGGGGTCAGATACTACACGGCGGCAAAGATAGCGGAGCTTGGGTTTACTGTGAAGACCCTCTTGGACATGACGGATGATGAGCTTGATGACATGATGAGCAGCCTCTCTCAGATATTCCGCTGGGAGTTGCTTGTTGGGGAGAGGTATGGTATCAAAGCTGCCGTCAGAGCCGAGCGTCGCCACCTTGATGAGGAGGACTCTCGGCGGCGCAACCATGTCTCTGGTGATACCACTACCAATGCCCTTGATGCTCTCTCCCAAGAAGGGCTGTCGGAGGAGCCGGTGCAACAAGAGAAGGAGATGGTGGGGAGCGGCGGAGGGGCGGCGTGGGAGGTTGCGACGGCAGGGGAGAGGCGTAAGAAGCAGCGGAGGATGAAGAAGGGGCAATTTAGAAATTGTAGTGCTGGAGGGCGTCATAATAATGATAATAACGAGGGTGTGGACGACGAGGACGACAACGACATGGACGACATGACTGGGCATGGGAACGGTGGAGGAGGGGGAATGCTGGGAGAGAGACAGAGGGAGCACCCGTTCATTGTGACGGAGCCTGGGGAGGTGGCGCGTGGCAAAAAGAACGGCCTCGATTACCTCTTCCATCTCTACGAGCAGTGCCGCGATTTCTTGATCCAGGTCCAGAACATTGCCAAGGAGCGCGGTGAAAAATGTCCCACCAAGGTGACAAACCAAGTGTTTAGGTATGCCAAAAAGGCAGGGGCCAGCTACATCAACAAGCCAAAGATGCGGCACTACGTGCACTGCTACGCCCTGCATTGCTTGGATGAGGAGGCATCGAATGCGTTGAGGAGAGCGTTCAAGGAGAGGGGCGAAAATGTCGGGGCTTGGCGGCAGGCATGTTACAAGCCTCTTGTGGCCATTGCAGCAGGCCAAGGCTGGGACATTGATGCCATCTTCAATTCCCATCCCCGTCTCTCTATTTGGTATGTTCCCACGAAGCTTCGTCAGCTTTGTCACGCCGAGCGCAACAACGCCACTGCCTCTAGCTCTGCCTCCGGCGGCGGTGATCACCTGCCCTATTGA

Protein Analysis

411

Amino Acids

45.31

Weight (kDa)

6.34

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_LFY PF01698 54 - 129 1.3e-42 Floricaula / Leafy protein SAM domain
C_LFY_FLO PF17538 230 - 396 2.5e-109 DNA Binding Domain (C-terminal) Leafy/Floricaula
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 504
AccII CGCG 3 cut(s) 757, 810, 849
AclWI GGATC 2 cut(s) 12, 814
AcoI YGGCCR 2 cut(s) 140, 1065
AcyI GRCGYC 1 cut(s) 604
AdeI CACNNNGTG 1 cut(s) 946
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 3 cut(s) 382, 456, 1087
AgsI TTSAA 3 cut(s) 34, 1009, 1108
AjnI CCWGG 4 cut(s) 145, 183, 742, 822
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AleI CACNNNNGTG 1 cut(s) 869
AloI GAACNNNNNNTCC 2 cut(s) 710, 742
Alw21I GWGCWC 2 cut(s) 723, 951
Alw26I GTCTC 3 cut(s) 415, 703, 1127
Alw44I GTGCAC 1 cut(s) 947
AlwI GGATC 2 cut(s) 12, 814
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 6 cut(s) 40, 140, 772, 909, 1065, 1078
ApaLI GTGCAC 1 cut(s) 947
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 4 cut(s) 402, 757, 849, 1176
AspS9I GGNCC 3 cut(s) 40, 826, 909
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 6 cut(s) 161, 428, 863, 883, 1211, 1226
AvaII GGWCC 1 cut(s) 826
BaeGI GKGCMC 1 cut(s) 951
BalI TGGCCA 1 cut(s) 1067
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 723, 951
BccI CCATC 4 cut(s) 487, 798, 1109, 1122
BceAI ACGGC 5 cut(s) 74, 225, 338, 549, 787
BciT130I CCWGG 4 cut(s) 147, 185, 744, 824
BclI TGATCA 1 cut(s) 1216
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 415, 703, 1127
BfaI CTAG 1 cut(s) 1194
BglI GCCNNNNNGGC 2 cut(s) 48, 902
Bme1390I CCNGG 5 cut(s) 71, 147, 185, 744, 824
Bme18I GGWCC 1 cut(s) 826
BmgT120I GGNCC 3 cut(s) 40, 826, 909
BmiI GGNNCC 5 cut(s) 6, 41, 471, 741, 910
BmrFI CCNGG 5 cut(s) 71, 147, 185, 744, 824
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 4 cut(s) 430, 924, 992, 1087
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 946
BsaHI GRCGYC 1 cut(s) 604
BsaJI CCNNGG 4 cut(s) 743, 840, 867, 1081
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 710, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 456, 1087
Bse118I RCCGGY 1 cut(s) 472
Bse1I ACTGG 1 cut(s) 673
Bse3DI GCAATG 3 cut(s) 834, 964, 1068
BseBI CCWGG 4 cut(s) 147, 185, 744, 824
BseDI CCNNGG 4 cut(s) 743, 840, 867, 1081
BseGI GGATG 4 cut(s) 271, 570, 979, 1114
BseLI CCNNNNNNNGG 3 cut(s) 382, 456, 1087
BseMI GCAATG 3 cut(s) 834, 964, 1068
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 673
BseRI GAGGAG 5 cut(s) 398, 482, 702, 992, 1012
BseSI GKGCMC 1 cut(s) 951
BseX3I CGGCCG 1 cut(s) 140
BseYI CCCAGC 3 cut(s) 312, 700, 1086
Bsh1236I CGCG 3 cut(s) 757, 810, 849
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 6 cut(s) 42, 142, 774, 911, 1067, 1080
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 723, 951
BsiSI CCGG 3 cut(s) 70, 473, 1206
BslFI GGGAC 2 cut(s) 846, 1103
BslI CCNNNNNNNGG 3 cut(s) 382, 456, 1087
BsmAI GTCTC 3 cut(s) 415, 703, 1127
BsmBI CGTCTC 1 cut(s) 1127
BsmFI GGGAC 2 cut(s) 846, 1103
BsmI GAATGC 2 cut(s) 702, 994
BsnI GGCC 6 cut(s) 42, 142, 774, 911, 1067, 1080
Bsp1286I GDGCHC 2 cut(s) 723, 951
Bsp143I GATC 3 cut(s) 4, 819, 1216
BspANI GGCC 6 cut(s) 42, 142, 774, 911, 1067, 1080
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 3 cut(s) 757, 810, 849
BspLI GGNNCC 5 cut(s) 6, 41, 471, 741, 910
BspPI GGATC 2 cut(s) 12, 814
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 3 cut(s) 834, 964, 1068
BsrFI RCCGGY 1 cut(s) 472
BsrI ACTGG 1 cut(s) 673
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 4 cut(s) 743, 840, 867, 1081
BssMI GATC 3 cut(s) 4, 819, 1216
BssNI GRCGYC 1 cut(s) 604
BssT1I CCWWGG 3 cut(s) 840, 867, 1081
Bst2UI CCWGG 4 cut(s) 147, 185, 744, 824
Bst4CI ACNGT 2 cut(s) 241, 683
Bst6I CTCTTC 1 cut(s) 791
BstACI GRCGYC 1 cut(s) 604
BstAPI GCANNNNNTGC 3 cut(s) 113, 946, 989
BstBAI YACGTR 1 cut(s) 946
BstC8I GCNNGC 3 cut(s) 913, 1044, 1078
BstDEI CTNAG 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 4 cut(s) 271, 570, 979, 1114
BstFNI CGCG 3 cut(s) 757, 810, 849
BstHHI GCGC 4 cut(s) 402, 757, 849, 1176
BstKTI GATC 3 cut(s) 7, 822, 1219
BstMAI GTCTC 3 cut(s) 415, 703, 1127
BstMBI GATC 3 cut(s) 4, 819, 1216
BstMCI CGRYCG 1 cut(s) 143
BstNI CCWGG 4 cut(s) 147, 185, 744, 824
BstNSI RCATGY 1 cut(s) 1050
BstSCI CCNGG 5 cut(s) 69, 145, 183, 742, 822
BstSLI GKGCMC 1 cut(s) 951
BstUI CGCG 3 cut(s) 757, 810, 849
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 2 cut(s) 191, 413
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 140
BsuRI GGCC 6 cut(s) 42, 142, 774, 911, 1067, 1080
BtsCI GGATG 4 cut(s) 271, 570, 979, 1114
BtsI GCAGTG 3 cut(s) 809, 949, 1185
BtsIMutI CAGTG 3 cut(s) 809, 949, 1185
Cac8I GCNNGC 3 cut(s) 913, 1044, 1078
CaiI CAGNNNCTG 1 cut(s) 113
CciNI GCGGCCGC 1 cut(s) 140
CfoI GCGC 4 cut(s) 402, 757, 849, 1176
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 3 cut(s) 40, 826, 909
CseI GACGC 2 cut(s) 356, 593
Csp6I GTAC 1 cut(s) 132
CviAII CATG 8 cut(s) 52, 259, 283, 407, 655, 664, 674, 1047
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 1 cut(s) 300
DpnI GATC 3 cut(s) 6, 821, 1218
DpnII GATC 3 cut(s) 4, 819, 1216
DraIII CACNNNGTG 1 cut(s) 946
EaeI YGGCCR 2 cut(s) 140, 1065
EagI CGGCCG 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 791
EarI CTCTTC 1 cut(s) 791
EciI GGCGGA 1 cut(s) 522
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 3 cut(s) 840, 867, 1081
Eco47I GGWCC 1 cut(s) 826
Eco52I CGGCCG 1 cut(s) 140
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 4 cut(s) 145, 183, 742, 822
EcoT14I CCWWGG 3 cut(s) 840, 867, 1081
ErhI CCWWGG 3 cut(s) 840, 867, 1081
Esp3I CGTCTC 1 cut(s) 1127
FaeI CATG 8 cut(s) 55, 262, 286, 410, 658, 667, 677, 1050
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 846, 1103
FatI CATG 8 cut(s) 51, 258, 282, 406, 654, 663, 673, 1046
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 1216
FokI GGATG 4 cut(s) 278, 577, 986, 1101
FspBI CTAG 1 cut(s) 1194
GlaI GCGC 4 cut(s) 401, 756, 848, 1175
GsaI CCCAGC 3 cut(s) 316, 704, 1090
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 6 cut(s) 42, 142, 774, 911, 1067, 1080
HapII CCGG 3 cut(s) 70, 473, 1206
HgaI GACGC 2 cut(s) 356, 593
HhaI GCGC 4 cut(s) 402, 757, 849, 1176
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 8 cut(s) 55, 262, 286, 410, 658, 667, 677, 1050
Hin6I GCGC 4 cut(s) 400, 755, 847, 1174
HinP1I GCGC 4 cut(s) 400, 755, 847, 1174
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 1 cut(s) 389
HpaII CCGG 3 cut(s) 70, 473, 1206
HphI GGTGA 6 cut(s) 161, 428, 863, 883, 1211, 1226
Hpy166II GTNNAC 3 cut(s) 237, 634, 949
Hpy188I TCNGA 4 cut(s) 200, 303, 359, 466
Hpy188III TCNNGA 3 cut(s) 8, 817, 829
Hpy8I GTNNAC 3 cut(s) 237, 634, 949
Hpy99I CGWCG 4 cut(s) 67, 372, 535, 641
HpyAV CCTTC 4 cut(s) 25, 449, 481, 565
HpyCH4III ACNGT 2 cut(s) 241, 683
HpyCH4IV ACGT 1 cut(s) 945
HpyCH4V TGCA 4 cut(s) 478, 949, 964, 1073
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 945
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 8 cut(s) 55, 262, 286, 410, 658, 667, 677, 1050
HspAI GCGC 4 cut(s) 400, 755, 847, 1174
Ksp22I TGATCA 1 cut(s) 1216
Kzo9I GATC 3 cut(s) 4, 819, 1216
LmnI GCTCC 6 cut(s) 226, 469, 501, 718, 739, 844
LweI GCATC 4 cut(s) 430, 924, 992, 1087
MaeI CTAG 1 cut(s) 1194
MaeII ACGT 1 cut(s) 945
MaeIII GTNAC 4 cut(s) 733, 871, 1049, 1163
MalI GATC 3 cut(s) 6, 821, 1218
MbiI CCGCTC 1 cut(s) 504
MboI GATC 3 cut(s) 4, 819, 1216
MboII GAAGA 4 cut(s) 256, 580, 778, 1096
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 723, 951
MlsI TGGCCA 1 cut(s) 1067
MluCI AATT 3 cut(s) 578, 586, 1108
MluNI TGGCCA 1 cut(s) 1067
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 444
Mox20I TGGCCA 1 cut(s) 1067
MroXI GAANNNNTTC 1 cut(s) 29
MscI TGGCCA 1 cut(s) 1067
MslI CAYNNNNRTG 4 cut(s) 56, 378, 612, 869
Msp20I TGGCCA 1 cut(s) 1067
MspA1I CMGCKG 5 cut(s) 79, 104, 110, 312, 559
MspI CCGG 3 cut(s) 70, 473, 1206
MspR9I CCNGG 5 cut(s) 71, 147, 185, 744, 824
Mva1269I GAATGC 2 cut(s) 702, 994
MvaI CCWGG 4 cut(s) 147, 185, 744, 824
MvnI CGCG 3 cut(s) 757, 810, 849
NciI CCSGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 4, 819, 1216
NlaIII CATG 8 cut(s) 55, 262, 286, 410, 658, 667, 677, 1050
NlaIV GGNNCC 5 cut(s) 6, 41, 471, 741, 910
NmeAIII GCCGAG 3 cut(s) 373, 388, 1195
NmuCI GTSAC 3 cut(s) 733, 871, 1163
NotI GCGGCCGC 1 cut(s) 140
NspI RCATGY 1 cut(s) 1050
OliI CACNNNNGTG 1 cut(s) 869
PcsI WCGNNNNNNNCGW 2 cut(s) 642, 657
PctI GAATGC 2 cut(s) 702, 994
PdmI GAANNNNTTC 1 cut(s) 29
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 1 cut(s) 946
Psp6I CCWGG 4 cut(s) 145, 183, 742, 822
PspFI CCCAGC 3 cut(s) 312, 700, 1086
PspGI CCWGG 4 cut(s) 145, 183, 742, 822
PspN4I GGNNCC 5 cut(s) 6, 41, 471, 741, 910
PspPI GGNCC 3 cut(s) 40, 826, 909
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 79, 110
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 4 cut(s) 56, 378, 612, 869
Sau3AI GATC 3 cut(s) 4, 819, 1216
Sau96I GGNCC 3 cut(s) 40, 826, 909
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 5 cut(s) 71, 147, 185, 744, 824
SduI GDGCHC 2 cut(s) 723, 951
SfaNI GCATC 4 cut(s) 430, 924, 992, 1087
SinI GGWCC 1 cut(s) 826
SmiMI CAYNNNNRTG 4 cut(s) 56, 378, 612, 869
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 578, 586, 1108
SspMI CTAG 1 cut(s) 1194
StyD4I CCNGG 5 cut(s) 69, 145, 183, 742, 822
StyI CCWWGG 3 cut(s) 840, 867, 1081
TaaI ACNGT 2 cut(s) 241, 683
TaiI ACGT 1 cut(s) 948
TaqI TCGA 2 cut(s) 777, 986
TasI AATT 3 cut(s) 578, 586, 1108
TatI WGTACW 1 cut(s) 131
TscAI CASTG 3 cut(s) 809, 956, 1192
TseFI GTSAC 3 cut(s) 733, 871, 1163
Tsp45I GTSAC 3 cut(s) 733, 871, 1163
TspDTI ATGAA 2 cut(s) 581, 718
TspGWI ACGGA 2 cut(s) 278, 752
TspRI CASTG 3 cut(s) 809, 956, 1192
VneI GTGCAC 1 cut(s) 947
VpaK11BI GGWCC 1 cut(s) 826
XagI CCTNNNNNAGG 1 cut(s) 380
XceI RCATGY 1 cut(s) 1050
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.