FvH4_3g04170

Floricaula leafy homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
2331651 .. 2335381
3731 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04170.t1

Sequence Viewer

Length: 1164 bp
ATGGATCCATACTCGATCACTGCGAGTTTGTTCCAGTGGGACTTCAGTTTTGCTCCCCAACAAGCCGCCGCGGGTTACTCGCTGCTGCCGCTGGAAGAGATGTTCCGGACGTACGGAGTGAGGTACCACGTGGCGGCGACGATAGCGGAGCTCGGGTTCACTGTGAGCACGCTTTTGGAAATGAAAGATGAGGAGCTTGACGACATGATGAACAGCGTGTCTCAGTTTTCGCAGGTGGAGCTACTCGTCGGGGAAAGGTACGGCATCAAGGCTGCCGTCCGAGCCCAGAGGAGGCAACGTCTTGAGGAGGAGGAGGAGGAGGACTGGCCTCTCTCCGGCGACACCAACGCTATGGATGCTGATCTCCCCCAACAAGGGCTGTCGGAGGAGCCGGTGCAACAAGAGAAGGAGATGGTGGGGAGTGGCGGAGAAGCAGCATGTGAGGGGGTTACGGCGGCGAAGAAGCGGAAGAGGGAGCTGAGGAGGATTAGGAGAGGAGGTGGGCATAGGAGTAGTAACGAGGGGGTTGATGATGATGATGATGAGATTGAAGAGAACGAGGACGGCATCAATGGAGGAGGAGGGGAGCAGCCGAGTAGGGCATTAGCAAAGAGGGGTGGTGGGAGAAAGAGACAGAGGGAGCACCCCTTCATCGTGACGGAGCCTGGGGAGGTGGCACGAGGCAAAAAGAACGGACTGGATTACCTCTTCCATCTCTACGAGCAGTGCTATCAGTATTTGACCCAGGTCCAGAACACTGCCAAGGAGCGTGGTGAAAAATGTCCCACCAAGGTGACTAACGAGGTGTTTAGATATGCGAAAAAAGAAGGGGCCAACTACATCAACAAGCCCAAACTGCGGCATTACGTTCACTGCTACGCGCTGCATTGCCTGAACAAGGATCGTTCGAATGCGTTGAGGCGAGAGTACAAGCTGCGAGGCCAGAACATCGGGGCGTGGAGGCAGGCGTGTTACACGCCTGTGGTCGAAATAGCTGCAGCCCACGGCTTGGACATTGACGCCATTTTTAGTGCACATCCTCAGCTATCCGTTTGGTATGTTCCTACCAAACTTCGCCAGCTTTGTCATGCCGAGCGCATCAATGCCGCTGCGTCTAGCACCGCCTCAGGTGGAAGCGGTACTGCTCATCAGCTGCCCTACTGA

Protein Analysis

388

Amino Acids

43.41

Weight (kDa)

5.95

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_LFY PF01698 30 - 105 1.2e-33 Floricaula / Leafy protein SAM domain
C_LFY_FLO PF17538 206 - 370 1.5e-95 DNA Binding Domain (C-terminal) Leafy/Floricaula
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
Acc65I GGTACC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 1009
AccII CGCG 2 cut(s) 71, 881
AccIII TCCGGA 1 cut(s) 105
AclWI GGATC 2 cut(s) 12, 909
AcuI CTGAAG 1 cut(s) 28
AcvI CACGTG 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 1020
AfaI GTAC 5 cut(s) 113, 125, 260, 929, 1141
AfiI CCNNNNNNNGG 8 cut(s) 133, 291, 335, 374, 375, 858, 898, 1009
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 2 cut(s) 664, 744
AleI CACNNNNGTG 2 cut(s) 791, 980
AloI GAACNNNNNNTCC 4 cut(s) 86, 118, 140, 172
AluBI AGCT 9 cut(s) 151, 196, 241, 478, 934, 995, 1045, 1081, 1153
AluI AGCT 9 cut(s) 151, 196, 241, 478, 934, 995, 1045, 1081, 1153
Alw21I GWGCWC 4 cut(s) 153, 170, 645, 1036
Alw26I GTCTC 2 cut(s) 225, 625
Alw44I GTGCAC 1 cut(s) 1032
AlwI GGATC 2 cut(s) 12, 909
Ama87I CYCGRG 1 cut(s) 152
Aor13HI TCCGGA 1 cut(s) 105
AoxI GGCC 3 cut(s) 326, 831, 940
ApaLI GTGCAC 1 cut(s) 1032
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
Asp718I GGTACC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 883, 1098
AspS9I GGNCC 2 cut(s) 748, 831
AsuHPI GGTGA 2 cut(s) 785, 805
AsuII TTCGAA 1 cut(s) 908
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 748
AxyI CCTNAGG 1 cut(s) 1126
BaeGI GKGCMC 1 cut(s) 1036
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 153, 286
BauI CACGAG 1 cut(s) 678
BbrPI CACGTG 1 cut(s) 130
Bbv12I GWGCWC 4 cut(s) 153, 170, 645, 1036
BbvCI CCTCAGC 2 cut(s) 479, 1041
BccI CCATC 2 cut(s) 406, 720
BceAI ACGGC 5 cut(s) 260, 277, 468, 580, 1021
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 2 cut(s) 666, 746
BcoDI GTCTC 2 cut(s) 225, 625
BfaI CTAG 1 cut(s) 1116
BfmI CTRYAG 1 cut(s) 996
BfuAI ACCTGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 666, 746
Bme18I GGWCC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 748, 831
BmiI GGNNCC 5 cut(s) 6, 125, 390, 663, 832
BmrFI CCNGG 2 cut(s) 666, 746
BmsI GCATC 4 cut(s) 273, 346, 576, 1107
BoxI GACNNNNGTC 1 cut(s) 746
Bpu10I CCTNAGC 2 cut(s) 479, 1041
Bpu14I TTCGAA 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 1020
BsaJI CCNNGG 6 cut(s) 69, 665, 744, 762, 789, 1003
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 6 cut(s) 140, 170, 283, 313, 484, 514
Bsc4I CCNNNNNNNGG 8 cut(s) 133, 291, 335, 374, 375, 858, 898, 1009
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 3 cut(s) 34, 329, 702
Bse21I CCTNAGG 1 cut(s) 1126
Bse3DI GCAATG 1 cut(s) 886
Bse8I GATNNNNATC 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 2 cut(s) 666, 746
BseDI CCNNGG 6 cut(s) 69, 665, 744, 762, 789, 1003
BseGI GGATG 2 cut(s) 361, 1036
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 8 cut(s) 133, 291, 335, 374, 375, 858, 898, 1009
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 4 cut(s) 236, 470, 1055, 1140
BseNI ACTGG 3 cut(s) 34, 329, 702
BseSI GKGCMC 1 cut(s) 1036
Bsh1236I CGCG 2 cut(s) 71, 881
BshFI GGCC 3 cut(s) 328, 833, 942
BshNI GGYRCC 1 cut(s) 123
BsiHKAI GWGCWC 4 cut(s) 153, 170, 645, 1036
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 3 cut(s) 106, 336, 392
BsiWI CGTACG 1 cut(s) 111
BslFI GGGAC 2 cut(s) 53, 768
BslI CCNNNNNNNGG 8 cut(s) 133, 291, 335, 374, 375, 858, 898, 1009
BsmAI GTCTC 2 cut(s) 225, 625
BsmFI GGGAC 2 cut(s) 53, 768
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 3 cut(s) 328, 833, 942
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 908
Bsp1286I GDGCHC 5 cut(s) 153, 170, 286, 645, 1036
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 4 cut(s) 4, 15, 361, 901
BspANI GGCC 3 cut(s) 328, 833, 942
BspCNI CTCAG 4 cut(s) 235, 471, 1054, 1139
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 2 cut(s) 71, 881
BspLI GGNNCC 5 cut(s) 6, 125, 390, 663, 832
BspMAI CTGCAG 1 cut(s) 1000
BspMI ACCTGC 1 cut(s) 223
BspPI GGATC 2 cut(s) 12, 909
BspT104I TTCGAA 1 cut(s) 908
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 886
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 3 cut(s) 34, 329, 702
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 6 cut(s) 69, 665, 744, 762, 789, 1003
BssMI GATC 4 cut(s) 4, 15, 361, 901
BssNI GRCGYC 1 cut(s) 1020
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 2 cut(s) 762, 789
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 2 cut(s) 666, 746
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 4 cut(s) 90, 464, 546, 713
BstACI GRCGYC 1 cut(s) 1020
BstBAI YACGTR 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 3 cut(s) 170, 966, 1079
BstDEI CTNAG 4 cut(s) 222, 479, 1041, 1126
BstDSI CCRYGG 2 cut(s) 69, 1003
BstENI CCTNNNNNAGG 1 cut(s) 896
BstF5I GGATG 2 cut(s) 361, 1036
BstFNI CGCG 2 cut(s) 71, 881
BstHHI GCGC 2 cut(s) 883, 1098
BstKTI GATC 4 cut(s) 7, 18, 364, 904
BstMAI GTCTC 2 cut(s) 225, 625
BstMBI GATC 4 cut(s) 4, 15, 361, 901
BstMWI GCNNNNNNNGC 6 cut(s) 88, 143, 238, 281, 356, 856
BstNI CCWGG 2 cut(s) 666, 746
BstNSI RCATGY 1 cut(s) 441
BstPAI GACNNNNGTC 1 cut(s) 746
BstSCI CCNGG 2 cut(s) 664, 744
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 1036
BstUI CGCG 2 cut(s) 71, 881
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 1126
BsuRI GGCC 3 cut(s) 328, 833, 942
BtgI CCRYGG 2 cut(s) 69, 1003
BtsCI GGATG 2 cut(s) 361, 1036
BtsI GCAGTG 4 cut(s) 18, 731, 756, 871
BtsIMutI CAGTG 6 cut(s) 18, 41, 159, 731, 756, 871
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 170, 966, 1079
CfoI GCGC 2 cut(s) 883, 1098
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 748, 831
Cfr42I CCGCGG 1 cut(s) 72
CseI GACGC 2 cut(s) 1028, 1101
Csp6I GTAC 5 cut(s) 112, 124, 259, 928, 1140
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 3 cut(s) 205, 438, 1088
CviQI GTAC 5 cut(s) 112, 124, 259, 928, 1140
DdeI CTNAG 4 cut(s) 222, 479, 1041, 1126
DpnI GATC 4 cut(s) 6, 17, 363, 903
DpnII GATC 4 cut(s) 4, 15, 361, 901
Eam1104I CTCTTC 4 cut(s) 90, 464, 546, 713
EarI CTCTTC 4 cut(s) 90, 464, 546, 713
EciI GGCGGA 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 762, 789
Eco24I GRGCYC 2 cut(s) 153, 286
Eco47I GGWCC 1 cut(s) 748
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 28
Eco72I CACGTG 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 1126
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 664, 744
EcoT14I CCWWGG 2 cut(s) 762, 789
EcoT38I GRGCYC 2 cut(s) 153, 286
ErhI CCWWGG 2 cut(s) 762, 789
FaeI CATG 3 cut(s) 208, 441, 1091
FaiI YATR 8 cut(s) 10, 206, 353, 439, 507, 816, 1059, 1089
FaqI GGGAC 2 cut(s) 53, 768
FatI CATG 3 cut(s) 204, 437, 1087
FauI CCCGC 1 cut(s) 64
FokI GGATG 2 cut(s) 368, 1023
FriOI GRGCYC 2 cut(s) 153, 286
FspBI CTAG 1 cut(s) 1116
GlaI GCGC 2 cut(s) 882, 1097
HaeIII GGCC 3 cut(s) 328, 833, 942
HapII CCGG 3 cut(s) 106, 336, 392
HgaI GACGC 2 cut(s) 1028, 1101
HhaI GCGC 2 cut(s) 883, 1098
Hin1I GRCGYC 1 cut(s) 1020
Hin1II CATG 3 cut(s) 208, 441, 1091
Hin6I GCGC 2 cut(s) 881, 1096
HinP1I GCGC 2 cut(s) 881, 1096
HpaII CCGG 3 cut(s) 106, 336, 392
HphI GGTGA 2 cut(s) 785, 805
Hpy166II GTNNAC 3 cut(s) 159, 871, 1034
Hpy188I TCNGA 2 cut(s) 281, 385
Hpy188III TCNNGA 4 cut(s) 106, 302, 655, 751
Hpy8I GTNNAC 3 cut(s) 159, 871, 1034
Hpy99I CGWCG 2 cut(s) 142, 251
HpyAV CCTTC 3 cut(s) 400, 658, 821
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 4 cut(s) 110, 129, 298, 867
HpyCH4V TGCA 4 cut(s) 397, 886, 998, 1034
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 143, 238, 281, 356, 856
HpyF3I CTNAG 4 cut(s) 222, 479, 1041, 1126
HpySE526I ACGT 4 cut(s) 110, 129, 298, 867
Hsp92I GRCGYC 1 cut(s) 1020
Hsp92II CATG 3 cut(s) 208, 441, 1091
HspAI GCGC 2 cut(s) 881, 1096
Kpn2I TCCGGA 1 cut(s) 105
KpnI GGTACC 1 cut(s) 127
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 4 cut(s) 4, 15, 361, 901
LweI GCATC 4 cut(s) 273, 346, 576, 1107
MaeI CTAG 1 cut(s) 1116
MaeII ACGT 4 cut(s) 110, 129, 298, 867
MaeIII GTNAC 6 cut(s) 74, 448, 515, 655, 793, 971
MalI GATC 4 cut(s) 6, 17, 363, 903
MboI GATC 4 cut(s) 4, 15, 361, 901
MboII GAAGA 5 cut(s) 107, 472, 481, 563, 700
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 5 cut(s) 153, 170, 286, 645, 1036
MmeI TCCRAC 1 cut(s) 363
MroI TCCGGA 1 cut(s) 105
MslI CAYNNNNRTG 2 cut(s) 791, 980
MspA1I CMGCKG 4 cut(s) 71, 91, 1109, 1153
MspI CCGG 3 cut(s) 106, 336, 392
MspR9I CCNGG 2 cut(s) 666, 746
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 2 cut(s) 666, 746
MvnI CGCG 2 cut(s) 71, 881
MwoI GCNNNNNNNGC 6 cut(s) 88, 143, 238, 281, 356, 856
NdeII GATC 4 cut(s) 4, 15, 361, 901
NlaIII CATG 3 cut(s) 208, 441, 1091
NlaIV GGNNCC 5 cut(s) 6, 125, 390, 663, 832
NmeAIII GCCGAG 2 cut(s) 618, 1117
NmuCI GTSAC 2 cut(s) 655, 793
NspI RCATGY 1 cut(s) 441
NspV TTCGAA 1 cut(s) 908
OliI CACNNNNGTG 2 cut(s) 791, 980
PaqCI CACCTGC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 916
Pfl23II CGTACG 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 1009
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 130
PshAI GACNNNNGTC 1 cut(s) 746
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 664, 744
PspCI CACGTG 1 cut(s) 130
PspGI CCWGG 2 cut(s) 664, 744
PspLI CGTACG 1 cut(s) 111
PspN4I GGNNCC 5 cut(s) 6, 125, 390, 663, 832
PspPI GGNCC 2 cut(s) 748, 831
PstI CTGCAG 1 cut(s) 1000
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 1153
RsaI GTAC 5 cut(s) 113, 125, 260, 929, 1141
RsaNI GTAC 5 cut(s) 112, 124, 259, 928, 1140
RseI CAYNNNNRTG 2 cut(s) 791, 980
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 1 cut(s) 72
Sau3AI GATC 4 cut(s) 4, 15, 361, 901
Sau96I GGNCC 2 cut(s) 748, 831
ScrFI CCNGG 2 cut(s) 666, 746
SduI GDGCHC 5 cut(s) 153, 170, 286, 645, 1036
SfaNI GCATC 4 cut(s) 273, 346, 576, 1107
SfcI CTRYAG 1 cut(s) 996
Sfr303I CCGCGG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 908
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 1 cut(s) 748
SmiMI CAYNNNNRTG 2 cut(s) 791, 980
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SspMI CTAG 1 cut(s) 1116
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 664, 744
StyI CCWWGG 2 cut(s) 762, 789
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 4 cut(s) 113, 132, 301, 870
TaqI TCGA 3 cut(s) 14, 908, 987
TatI WGTACW 1 cut(s) 927
TauI GCSGC 7 cut(s) 68, 71, 91, 137, 458, 862, 1109
TscAI CASTG 6 cut(s) 25, 41, 166, 731, 763, 878
TseFI GTSAC 2 cut(s) 655, 793
Tsp45I GTSAC 2 cut(s) 655, 793
TspDTI ATGAA 3 cut(s) 197, 224, 640
TspGWI ACGGA 4 cut(s) 129, 674, 708, 1039
TspRI CASTG 6 cut(s) 25, 41, 166, 731, 763, 878
Van91I CCANNNNNTGG 1 cut(s) 1009
VneI GTGCAC 1 cut(s) 1032
VpaK11BI GGWCC 1 cut(s) 748
XagI CCTNNNNNAGG 1 cut(s) 896
XceI RCATGY 1 cut(s) 441
XspI CTAG 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.