FvH4_3g03530

Floricaula leafy homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
1953397 .. 1955959
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03530.t1

Sequence Viewer

Length: 1134 bp
ATGGATCCAGACGCGTCCACGGCGACTCTCTTCAAGTGGGACCTCAGATTTGCTCCCCAACAAACCGCCGCGGGTTACTCGCGGGCGCTGGAAGAGATGTTCCGGGCGTACGGAGTTAGGTCCTACGTGGCGGCCAAGATGGCGGATCTCGGGTTCACTGTGAGCACGCTTTTGGAGATGAAGGATGAAGAACTTGATGACATGATGAACAGCGTGAGTCAGGTTTCTCGGGTGGAGTTACTCGTCGGGGAAAGGTACGGCATCAAGGCTGCCGTCCGAGCCCAGAGGAGACGACGACTTGAGGAGGAGCCGCGCCACGCTCTCTCCGGCGACACCGTCGTTATCGATTCTCTCTCCCAAGAAGGGCTGTCGGAGGAGCCGGTGCAACTAGAGAAGGAGATGGTGGGGAGTGGCGGAGAAGCAGCATGTGAGGGGGTTAGGGCGGCGAAGAAGCGGAAGAGGGAGCTGAGGAGGATTAGGAGAGGAGGTGGGCATAGGAGTAGTAACGAGGGGGTTGATGATGATGAGAATGAAGAGAACGAAGACGGCATCAATGGAGGAGGAGGGGAGCAGCCGAGTAGGGCATTAGCAAAGAGGGGTGGTGGAAGAAAGAGACAGAGGGAGCACCCCTTCATCGTGACAGAGGCTGGGGAGGTGGTACGTGGCAAAAGTAATGGACTGGATTACCTCTTCCATCTCTACAAAGAGTGCCATCAGTTTTTGACCCAGGTCCAGAAGATTGCCAAGAAGCGTGGTGAAAAATGTCCCACCAAGATGACAAACAAGGTGTTTAGGTATGCGAAAGAAGAAGGAGCCAACCACATCAACAAGCCCAAAATGCGGCATTACGTTCACTGCTACGCGCTGCATTGCCTGGACGAGGAGCGATCAAATGCGTTGAGGCGAGAGTGCAAGCTGCGAGGAGACAACATCGGGGCGTGGATGCAGGCGTGTTACAGGTCTGTGGTGGAAATAGCTGCACCCCGAGGCTGGGACATTGATGCCATTTTCAGTGAACATCCTCAGCTATCTGTTTGGTACGTTCCTACCAAACTTCGCCAGCTTTGTCATGCCGAGCGCAACAATGCCACCGCGTCTAGCTCCGCCTCAGGTGGAAAGGATACTGCTGCATGA

Protein Analysis

378

Amino Acids

42.29

Weight (kDa)

8.66

Isoelectric Point (pI)

61.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_LFY PF01698 29 - 103 9.1e-35 Floricaula / Leafy protein SAM domain
C_LFY_FLO PF17538 200 - 364 4.8e-91 DNA Binding Domain (C-terminal) Leafy/Floricaula
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 6 cut(s) 14, 71, 82, 313, 863, 1094
AclWI GGATC 2 cut(s) 12, 153
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 4 cut(s) 110, 257, 660, 1040
AfiI CCNNNNNNNGG 5 cut(s) 363, 840, 880, 990, 991
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 2 cut(s) 726, 873
AloI GAACNNNNNNTCC 4 cut(s) 83, 115, 137, 169
AluBI AGCT 6 cut(s) 466, 916, 977, 1027, 1063, 1101
AluI AGCT 6 cut(s) 466, 916, 977, 1027, 1063, 1101
Alw21I GWGCWC 2 cut(s) 167, 627
Alw26I GTCTC 3 cut(s) 283, 607, 918
AlwI GGATC 2 cut(s) 12, 153
AlwNI CAGNNNCTG 1 cut(s) 647
Ama87I CYCGRG 3 cut(s) 149, 228, 984
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 7 cut(s) 269, 422, 571, 865, 916, 977, 1127
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 4 cut(s) 88, 315, 865, 1080
AspS9I GGNCC 3 cut(s) 40, 120, 730
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 767
AvaI CYCGRG 3 cut(s) 149, 228, 984
AvaII GGWCC 3 cut(s) 40, 120, 730
AxyI CCTNAGG 1 cut(s) 1108
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 2 cut(s) 167, 627
BbvCI CCTCAGC 2 cut(s) 467, 1023
BbvI GCAGC 7 cut(s) 256, 434, 583, 852, 903, 964, 1114
BccI CCATC 4 cut(s) 133, 394, 702, 720
BceAI ACGGC 4 cut(s) 36, 257, 274, 562
BciT130I CCWGG 2 cut(s) 728, 875
BciVI GTATCC 1 cut(s) 1114
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 3 cut(s) 283, 607, 918
BfaI CTAG 2 cut(s) 389, 1098
BfoI RGCGCY 1 cut(s) 89
BfuI GTATCC 1 cut(s) 1114
BglI GCCNNNNNGGC 1 cut(s) 140
Bme1390I CCNGG 3 cut(s) 104, 728, 875
Bme18I GGWCC 3 cut(s) 40, 120, 730
BmeT110I CYCGRG 3 cut(s) 149, 228, 984
BmgT120I GGNCC 3 cut(s) 40, 120, 730
BmiI GGNNCC 5 cut(s) 6, 41, 309, 378, 814
BmrFI CCNGG 3 cut(s) 104, 728, 875
BmsI GCATC 4 cut(s) 270, 558, 933, 991
BoxI GACNNNNGTC 1 cut(s) 728
BpiI GAAGAC 1 cut(s) 549
Bpu10I CCTNAGC 2 cut(s) 467, 1023
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 345
BsaAI YACGTR 2 cut(s) 127, 662
BsaJI CCNNGG 4 cut(s) 18, 69, 726, 985
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 472, 502
Bsc4I CCNNNNNNNGG 5 cut(s) 363, 840, 880, 990, 991
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 684
Bse21I CCTNAGG 1 cut(s) 1108
Bse3DI GCAATG 1 cut(s) 868
BseBI CCWGG 2 cut(s) 728, 875
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 4 cut(s) 18, 69, 726, 985
BseGI GGATG 3 cut(s) 190, 948, 1018
BseLI CCNNNNNNNGG 5 cut(s) 363, 840, 880, 990, 991
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 4 cut(s) 58, 458, 1037, 1122
BseNI ACTGG 1 cut(s) 684
BseXI GCAGC 7 cut(s) 256, 434, 583, 852, 903, 964, 1114
BseYI CCCAGC 2 cut(s) 647, 990
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 6 cut(s) 14, 71, 82, 313, 863, 1094
BshFI GGCC 1 cut(s) 134
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 167, 627
BsiHKCI CYCGRG 3 cut(s) 149, 228, 984
BsiSI CCGG 3 cut(s) 103, 327, 380
BsiWI CGTACG 1 cut(s) 108
BslFI GGGAC 3 cut(s) 53, 750, 1007
BslI CCNNNNNNNGG 5 cut(s) 363, 840, 880, 990, 991
BsmAI GTCTC 3 cut(s) 283, 607, 918
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 3 cut(s) 53, 750, 1007
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 3 cut(s) 149, 228, 984
Bsp1286I GDGCHC 3 cut(s) 167, 283, 627
Bsp143I GATC 3 cut(s) 4, 145, 887
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 4 cut(s) 57, 459, 1036, 1121
BspDI ATCGAT 1 cut(s) 345
BspFNI CGCG 6 cut(s) 14, 71, 82, 313, 863, 1094
BspLI GGNNCC 5 cut(s) 6, 41, 309, 378, 814
BspPI GGATC 2 cut(s) 12, 153
BsrDI GCAATG 1 cut(s) 868
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 684
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 4 cut(s) 18, 69, 726, 985
BssMI GATC 3 cut(s) 4, 145, 887
Bst2UI CCWGG 2 cut(s) 728, 875
Bst4CI ACNGT 2 cut(s) 160, 337
Bst6I CTCTTC 5 cut(s) 35, 87, 452, 528, 695
BstBAI YACGTR 2 cut(s) 127, 662
BstC8I GCNNGC 5 cut(s) 84, 167, 914, 948, 1061
BstDEI CTNAG 4 cut(s) 44, 467, 1023, 1108
BstDSI CCRYGG 2 cut(s) 18, 69
BstENI CCTNNNNNAGG 1 cut(s) 878
BstF5I GGATG 3 cut(s) 190, 948, 1018
BstFNI CGCG 6 cut(s) 14, 71, 82, 313, 863, 1094
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 4 cut(s) 88, 315, 865, 1080
BstKTI GATC 3 cut(s) 7, 148, 890
BstMAI GTCTC 3 cut(s) 283, 607, 918
BstMBI GATC 3 cut(s) 4, 145, 887
BstMWI GCNNNNNNNGC 4 cut(s) 20, 140, 278, 838
BstNI CCWGG 2 cut(s) 728, 875
BstNSI RCATGY 1 cut(s) 429
BstPAI GACNNNNGTC 1 cut(s) 728
BstSCI CCNGG 3 cut(s) 102, 726, 873
BstUI CGCG 6 cut(s) 14, 71, 82, 313, 863, 1094
BstV1I GCAGC 7 cut(s) 256, 434, 583, 852, 903, 964, 1114
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 2 cut(s) 4, 145
BstYI RGATCY 2 cut(s) 4, 145
Bsu15I ATCGAT 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 1108
BsuI GTATCC 1 cut(s) 1114
BsuRI GGCC 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 2 cut(s) 18, 69
BtsCI GGATG 3 cut(s) 190, 948, 1018
BtsI GCAGTG 1 cut(s) 853
BtsIMutI CAGTG 3 cut(s) 156, 853, 1018
Cac8I GCNNGC 5 cut(s) 84, 167, 914, 948, 1061
CaiI CAGNNNCTG 1 cut(s) 647
CfoI GCGC 4 cut(s) 88, 315, 865, 1080
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 40, 120, 730
Cfr42I CCGCGG 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 3 cut(s) 3, 20, 1083
Csp6I GTAC 4 cut(s) 109, 256, 659, 1039
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 4 cut(s) 202, 426, 1070, 1131
CviQI GTAC 4 cut(s) 109, 256, 659, 1039
DdeI CTNAG 4 cut(s) 44, 467, 1023, 1108
DpnI GATC 3 cut(s) 6, 147, 889
DpnII GATC 3 cut(s) 4, 145, 887
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 5 cut(s) 35, 87, 452, 528, 695
EarI CTCTTC 5 cut(s) 35, 87, 452, 528, 695
EciI GGCGGA 3 cut(s) 158, 429, 1093
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 3 cut(s) 40, 120, 730
Eco81I CCTNAGG 1 cut(s) 1108
Eco88I CYCGRG 3 cut(s) 149, 228, 984
EcoNI CCTNNNNNAGG 1 cut(s) 878
EcoO109I RGGNCCY 2 cut(s) 40, 120
EcoRII CCWGG 2 cut(s) 726, 873
EcoT38I GRGCYC 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 4 cut(s) 205, 429, 1073, 1134
FaiI YATR 6 cut(s) 203, 427, 495, 798, 1071, 1132
FaqI GGGAC 3 cut(s) 53, 750, 1007
FatI CATG 4 cut(s) 201, 425, 1069, 1130
FauI CCCGC 2 cut(s) 64, 75
FokI GGATG 3 cut(s) 197, 955, 1005
FriOI GRGCYC 1 cut(s) 283
FspBI CTAG 2 cut(s) 389, 1098
GlaI GCGC 4 cut(s) 87, 314, 864, 1079
GsaI CCCAGC 2 cut(s) 651, 994
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 1 cut(s) 134
HapII CCGG 3 cut(s) 103, 327, 380
HgaI GACGC 3 cut(s) 3, 20, 1083
HhaI GCGC 4 cut(s) 88, 315, 865, 1080
Hin1II CATG 4 cut(s) 205, 429, 1073, 1134
Hin6I GCGC 4 cut(s) 86, 313, 863, 1078
HinP1I GCGC 4 cut(s) 86, 313, 863, 1078
HinfI GANTC 3 cut(s) 25, 217, 347
HpaII CCGG 3 cut(s) 103, 327, 380
HphI GGTGA 1 cut(s) 767
Hpy166II GTNNAC 4 cut(s) 18, 156, 853, 1016
Hpy188I TCNGA 3 cut(s) 47, 278, 373
Hpy188III TCNNGA 3 cut(s) 8, 637, 733
Hpy8I GTNNAC 4 cut(s) 18, 156, 853, 1016
Hpy99I CGWCG 3 cut(s) 248, 297, 341
HpyAV CCTTC 5 cut(s) 175, 356, 388, 640, 803
HpyCH4III ACNGT 2 cut(s) 160, 337
HpyCH4IV ACGT 4 cut(s) 126, 661, 849, 1041
HpyCH4V TGCA 6 cut(s) 385, 868, 912, 946, 980, 1130
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 140, 278, 838
HpyF3I CTNAG 4 cut(s) 44, 467, 1023, 1108
HpySE526I ACGT 4 cut(s) 126, 661, 849, 1041
Hsp92II CATG 4 cut(s) 205, 429, 1073, 1134
HspAI GCGC 4 cut(s) 86, 313, 863, 1078
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 3 cut(s) 4, 145, 887
LmnI GCTCC 9 cut(s) 58, 307, 376, 463, 568, 622, 812, 883, 1106
Lsp1109I GCAGC 7 cut(s) 256, 434, 583, 852, 903, 964, 1114
LweI GCATC 4 cut(s) 270, 558, 933, 991
MaeI CTAG 2 cut(s) 389, 1098
MaeII ACGT 4 cut(s) 126, 661, 849, 1041
MaeIII GTNAC 5 cut(s) 74, 237, 503, 637, 953
MalI GATC 3 cut(s) 6, 147, 889
MboI GATC 3 cut(s) 4, 145, 887
MflI RGATCY 2 cut(s) 4, 145
MhlI GDGCHC 3 cut(s) 167, 283, 627
MluI ACGCGT 1 cut(s) 12
MlyI GAGTC 2 cut(s) 19, 226
MmeI TCCRAC 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 3 cut(s) 103, 327, 380
MspR9I CCNGG 3 cut(s) 104, 728, 875
MvaI CCWGG 2 cut(s) 728, 875
MvnI CGCG 6 cut(s) 14, 71, 82, 313, 863, 1094
MwoI GCNNNNNNNGC 4 cut(s) 20, 140, 278, 838
NciI CCSGG 1 cut(s) 104
NdeII GATC 3 cut(s) 4, 145, 887
NlaIII CATG 4 cut(s) 205, 429, 1073, 1134
NlaIV GGNNCC 5 cut(s) 6, 41, 309, 378, 814
NmeAIII GCCGAG 2 cut(s) 600, 1099
NmuCI GTSAC 1 cut(s) 637
NspI RCATGY 1 cut(s) 429
PfeI GAWTC 1 cut(s) 347
Pfl23II CGTACG 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 335
PleI GAGTC 2 cut(s) 19, 225
PpsI GAGTC 2 cut(s) 19, 225
Ppu21I YACGTR 2 cut(s) 127, 662
PpuMI RGGWCCY 2 cut(s) 40, 120
PshAI GACNNNNGTC 1 cut(s) 728
Psp5II RGGWCCY 2 cut(s) 40, 120
Psp6I CCWGG 2 cut(s) 726, 873
PspFI CCCAGC 2 cut(s) 647, 990
PspGI CCWGG 2 cut(s) 726, 873
PspLI CGTACG 1 cut(s) 108
PspN4I GGNNCC 5 cut(s) 6, 41, 309, 378, 814
PspPI GGNCC 3 cut(s) 40, 120, 730
PspPPI RGGWCCY 2 cut(s) 40, 120
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 2 cut(s) 4, 145
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 4 cut(s) 110, 257, 660, 1040
RsaNI GTAC 4 cut(s) 109, 256, 659, 1039
RseI CAYNNNNRTG 1 cut(s) 773
SacII CCGCGG 1 cut(s) 72
Sau3AI GATC 3 cut(s) 4, 145, 887
Sau96I GGNCC 3 cut(s) 40, 120, 730
SchI GAGTC 2 cut(s) 19, 226
ScrFI CCNGG 3 cut(s) 104, 728, 875
SduI GDGCHC 3 cut(s) 167, 283, 627
SfaNI GCATC 4 cut(s) 270, 558, 933, 991
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 3 cut(s) 40, 120, 730
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SspMI CTAG 2 cut(s) 389, 1098
StyD4I CCNGG 3 cut(s) 102, 726, 873
TaaI ACNGT 2 cut(s) 160, 337
TaiI ACGT 4 cut(s) 129, 664, 852, 1044
TaqI TCGA 1 cut(s) 345
TauI GCSGC 5 cut(s) 71, 134, 313, 446, 844
TfiI GAWTC 1 cut(s) 347
TscAI CASTG 3 cut(s) 163, 860, 1018
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 7 cut(s) 269, 422, 571, 865, 916, 977, 1127
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 5 cut(s) 194, 201, 221, 546, 622
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 3 cut(s) 163, 860, 1018
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 3 cut(s) 40, 120, 730
XagI CCTNNNNNAGG 1 cut(s) 878
XceI RCATGY 1 cut(s) 429
XspI CTAG 2 cut(s) 389, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.