MD06G1129500.v1.1

Floricaula leafy homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
27318257 .. 27320940
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1129500.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGGATCCAGATGCCTTCTCTGCGAACTTGTTCAAGTGGGACTTACGTGGGATGGTTGTGCCGACGAACCGGGTTCATCTCGAAGCAGCCGTGCCGCCAGCAGCCACAGCCGCTGGGGCGGCGGCTGGTTATACTTTGCGGCCGCCAAGAGAGCTTGGACTTGGAGGGCTTGAAGACTTGTTCCAGGCTTATGGGGTCAGATACTACACGGCGGCGAAGATAGCGGAGCTTGGATTTACTGTGAACACCCTCTTGGACCTGAAGGATGATGAGCTTGATGACATGATGAGCAGCCTCTCCCAGATATTCCGCTGGGAGTTGCTTGTTGGGGAGAGGTATGGTATCAAAGCTGCCGTCAGAGCCGAGCGCCGCCGCTTTGAGGAGGAGGACTCTCGGCGGCGCAACCCTGTCTCTGGTGATACCACCACCAATGCCTTAGATGCTCTCTCCCAAGAAGGGCTGTCGGAGGAGCCAGTGCAACAAGAGAAGGAGATGGTGGGGACCGGAGTAGGGATGGCGTGGGAGGTTGTGACGGCGGGGCAGAGGCGGAAGAAGCAGCGGAGGATGAAGAAGGGGCAATATAGGAACTGTAGTGCTGGAGGGGGTCATGATAATGATCATAACGAGGGTGTAGACGACAAGGACGACGACATGGACAACATGAATGGGCAGGGGAACGGTGGAGGAGGGGGGTTGCTAGGCGAGAGACAGAGGGAGCACCCGTTCATTGTGACGGAGCCTGGGGAGGTGGCACGTGGCAAAAAGAACGGTCTTGATTACCTCTTCTATCTCTACGAGCTGTGCCGTGATTTCTTGATCCAGGTCCAGAACATTGCCAAGGAGCGCGGTGAAAAATGTCCAACCAAGGTGACAAACCAGGTGTTTAGGTATGCCAAAAAGTCAGGCGCAAGCTACATCAACAAGCCGAAGATGCGGCACTATGTGCACTGCTACGCCCTGCATTGCCTGGACGTGGAGGCGTCGAATGTGCTGAGGAGAGCGTTCAAGGAGAGGGGCGAAAATGTCGGGGCATGGCGGCAGGCGTGTTACAAGCCTCTTGTGGTCATTGCAGCAGCCCAAGGCTGGGACATCGATGCCATTTTCAATTCTCATCCCCGTCTCTCCATCTGGTACGTTCCCACGAAGCTCCGTCAGCTTTGTCACGCCGAGCGCCACAATGCCACCGCCTCTAGCTCTGCCTCCGGTGGCGGGGGCGAGCACCTGCCCTATTGA

Protein Analysis

411

Amino Acids

45.69

Weight (kDa)

7.17

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_LFY PF01698 54 - 130 3e-42 Floricaula / Leafy protein SAM domain
C_LFY_FLO PF17538 228 - 395 3e-105 DNA Binding Domain (C-terminal) Leafy/Floricaula
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 633
AccII CGCG 1 cut(s) 846
AclWI GGATC 2 cut(s) 12, 811
AcoI YGGCCR 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 281
AcvI CACGTG 1 cut(s) 755
AcyI GRCGYC 1 cut(s) 980
AdeI CACNNNGTG 1 cut(s) 943
AfaI GTAC 1 cut(s) 1133
AfiI CCNNNNNNNGG 8 cut(s) 379, 413, 456, 510, 973, 1083, 1084, 1209
AgsI TTSAA 4 cut(s) 34, 173, 1006, 1105
AjiI CACGTC 1 cut(s) 973
AjnI CCWGG 5 cut(s) 183, 739, 819, 876, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AloI GAACNNNNNNTCC 2 cut(s) 707, 739
AluBI AGCT 9 cut(s) 154, 229, 274, 350, 799, 912, 1147, 1156, 1194
AluI AGCT 9 cut(s) 154, 229, 274, 350, 799, 912, 1147, 1156, 1194
Alw21I GWGCWC 3 cut(s) 720, 948, 1221
Alw26I GTCTC 3 cut(s) 415, 700, 1124
Alw44I GTGCAC 1 cut(s) 944
AlwI GGATC 2 cut(s) 12, 811
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 944
ApeKI GCWGC 7 cut(s) 86, 101, 291, 350, 556, 1070, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 5 cut(s) 369, 402, 846, 908, 1173
AspS9I GGNCC 3 cut(s) 256, 501, 823
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 428, 860, 880
AvaII GGWCC 3 cut(s) 256, 501, 823
BaeGI GKGCMC 1 cut(s) 948
BamHI GGATCC 1 cut(s) 4
BbrPI CACGTG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 3 cut(s) 720, 948, 1221
BbvCI CCTCAGC 1 cut(s) 992
BbvI GCAGC 7 cut(s) 98, 113, 303, 337, 568, 1082, 1085
BccI CCATC 4 cut(s) 46, 487, 508, 1133
BceAI ACGGC 5 cut(s) 74, 225, 338, 549, 789
BciT130I CCWGG 5 cut(s) 185, 741, 821, 878, 968
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 415, 700, 1124
BfaI CTAG 2 cut(s) 698, 1191
BfmI CTRYAG 1 cut(s) 589
BfoI RGCGCY 2 cut(s) 370, 1174
BglI GCCNNNNNGGC 1 cut(s) 116
Bme1390I CCNGG 6 cut(s) 71, 185, 741, 821, 878, 968
Bme18I GGWCC 3 cut(s) 256, 501, 823
BmgBI CACGTC 1 cut(s) 973
BmgT120I GGNCC 3 cut(s) 256, 501, 823
BmiI GGNNCC 4 cut(s) 6, 471, 502, 738
BmrFI CCNGG 6 cut(s) 71, 185, 741, 821, 878, 968
BmsI GCATC 3 cut(s) 430, 921, 1084
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 992
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 1092
BsaAI YACGTR 2 cut(s) 47, 755
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 980
BsaJI CCNNGG 4 cut(s) 740, 837, 864, 1078
BsaWI WCCGGW 2 cut(s) 503, 1202
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 8 cut(s) 379, 413, 456, 510, 973, 1083, 1084, 1209
Bse1I ACTGG 1 cut(s) 473
Bse3DI GCAATG 3 cut(s) 831, 961, 1065
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 5 cut(s) 185, 741, 821, 878, 968
BseCI ATCGAT 1 cut(s) 1092
BseDI CCNNGG 4 cut(s) 740, 837, 864, 1078
BseGI GGATG 5 cut(s) 57, 271, 519, 570, 1111
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 8 cut(s) 379, 413, 456, 510, 973, 1083, 1084, 1209
BseMI GCAATG 3 cut(s) 831, 961, 1065
BseMII CTCAG 1 cut(s) 983
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 5 cut(s) 395, 398, 482, 699, 1009
BseSI GKGCMC 1 cut(s) 948
BseX3I CGGCCG 1 cut(s) 140
BseXI GCAGC 7 cut(s) 98, 113, 303, 337, 568, 1082, 1085
BseYI CCCAGC 3 cut(s) 113, 312, 1083
Bsh1236I CGCG 1 cut(s) 846
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 1092
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 3 cut(s) 720, 948, 1221
BsiSI CCGG 3 cut(s) 70, 504, 1203
BslFI GGGAC 3 cut(s) 53, 514, 1100
BslI CCNNNNNNNGG 8 cut(s) 379, 413, 456, 510, 973, 1083, 1084, 1209
BsmAI GTCTC 3 cut(s) 415, 700, 1124
BsmBI CGTCTC 1 cut(s) 1124
BsmFI GGGAC 3 cut(s) 53, 514, 1100
BsnI GGCC 1 cut(s) 142
Bsp1286I GDGCHC 3 cut(s) 720, 948, 1221
Bsp143I GATC 3 cut(s) 4, 616, 816
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 984
BspDI ATCGAT 1 cut(s) 1092
BspFNI CGCG 1 cut(s) 846
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 4 cut(s) 6, 471, 502, 738
BspPI GGATC 2 cut(s) 12, 811
BsrDI GCAATG 3 cut(s) 831, 961, 1065
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 4 cut(s) 740, 837, 864, 1078
BssMI GATC 3 cut(s) 4, 616, 816
BssNI GRCGYC 1 cut(s) 980
BssT1I CCWWGG 3 cut(s) 837, 864, 1078
Bst2UI CCWGG 5 cut(s) 185, 741, 821, 878, 968
Bst4CI ACNGT 4 cut(s) 241, 590, 680, 770
Bst6I CTCTTC 1 cut(s) 788
BstACI GRCGYC 1 cut(s) 980
BstAPI GCANNNNNTGC 1 cut(s) 943
BstBAI YACGTR 2 cut(s) 47, 755
BstC8I GCNNGC 4 cut(s) 99, 910, 1041, 1217
BstDEI CTNAG 2 cut(s) 436, 992
BstF5I GGATG 5 cut(s) 57, 271, 519, 570, 1111
BstFNI CGCG 1 cut(s) 846
BstH2I RGCGCY 2 cut(s) 370, 1174
BstHHI GCGC 5 cut(s) 369, 402, 846, 908, 1173
BstKTI GATC 3 cut(s) 7, 619, 819
BstMAI GTCTC 3 cut(s) 415, 700, 1124
BstMBI GATC 3 cut(s) 4, 616, 816
BstMCI CGRYCG 1 cut(s) 143
BstNI CCWGG 5 cut(s) 185, 741, 821, 878, 968
BstSCI CCNGG 6 cut(s) 69, 183, 739, 819, 876, 966
BstSFI CTRYAG 1 cut(s) 589
BstSLI GKGCMC 1 cut(s) 948
BstUI CGCG 1 cut(s) 846
BstV1I GCAGC 7 cut(s) 98, 113, 303, 337, 568, 1082, 1085
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 140
Bsu15I ATCGAT 1 cut(s) 1092
BsuRI GGCC 1 cut(s) 142
BsuTUI ATCGAT 1 cut(s) 1092
BtrI CACGTC 1 cut(s) 973
BtsCI GGATG 5 cut(s) 57, 271, 519, 570, 1111
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 2 cut(s) 480, 946
Cac8I GCNNGC 4 cut(s) 99, 910, 1041, 1217
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 607
CciNI GCGGCCGC 1 cut(s) 140
CfoI GCGC 5 cut(s) 369, 402, 846, 908, 1173
Cfr13I GGNCC 3 cut(s) 256, 501, 823
ClaI ATCGAT 1 cut(s) 1092
CseI GACGC 1 cut(s) 969
CsiI ACCWGGT 1 cut(s) 876
Csp6I GTAC 1 cut(s) 1132
CviAII CATG 5 cut(s) 283, 608, 652, 661, 1032
CviQI GTAC 1 cut(s) 1132
DdeI CTNAG 2 cut(s) 436, 992
DpnI GATC 3 cut(s) 6, 618, 818
DpnII GATC 3 cut(s) 4, 616, 816
DraIII CACNNNGTG 1 cut(s) 943
EaeI YGGCCR 1 cut(s) 140
EagI CGGCCG 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
EciI GGCGGA 1 cut(s) 562
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 3 cut(s) 837, 864, 1078
Eco47I GGWCC 3 cut(s) 256, 501, 823
Eco52I CGGCCG 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 281
Eco72I CACGTG 1 cut(s) 755
EcoRII CCWGG 5 cut(s) 183, 739, 819, 876, 966
EcoT14I CCWWGG 3 cut(s) 837, 864, 1078
ErhI CCWWGG 3 cut(s) 837, 864, 1078
Esp3I CGTCTC 1 cut(s) 1124
FaeI CATG 5 cut(s) 286, 611, 655, 664, 1035
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 3 cut(s) 53, 514, 1100
FatI CATG 5 cut(s) 282, 607, 651, 660, 1031
FauI CCCGC 2 cut(s) 529, 1202
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 633
FokI GGATG 5 cut(s) 64, 278, 526, 577, 1098
FspBI CTAG 2 cut(s) 698, 1191
GlaI GCGC 5 cut(s) 368, 401, 845, 907, 1172
GsaI CCCAGC 3 cut(s) 117, 316, 1087
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 2 cut(s) 370, 1174
HaeIII GGCC 1 cut(s) 142
HapII CCGG 3 cut(s) 70, 504, 1203
HgaI GACGC 1 cut(s) 969
HhaI GCGC 5 cut(s) 369, 402, 846, 908, 1173
Hin1I GRCGYC 1 cut(s) 980
Hin1II CATG 5 cut(s) 286, 611, 655, 664, 1035
Hin6I GCGC 5 cut(s) 367, 400, 844, 906, 1171
HinP1I GCGC 5 cut(s) 367, 400, 844, 906, 1171
HinfI GANTC 1 cut(s) 389
HpaII CCGG 3 cut(s) 70, 504, 1203
HphI GGTGA 3 cut(s) 428, 860, 880
Hpy166II GTNNAC 3 cut(s) 244, 634, 946
Hpy188I TCNGA 3 cut(s) 200, 359, 466
Hpy188III TCNNGA 6 cut(s) 8, 80, 608, 773, 814, 826
Hpy8I GTNNAC 3 cut(s) 244, 634, 946
Hpy99I CGWCG 3 cut(s) 67, 650, 985
HpyAV CCTTC 5 cut(s) 25, 256, 449, 481, 565
HpyCH4III ACNGT 4 cut(s) 241, 590, 680, 770
HpyCH4IV ACGT 4 cut(s) 46, 754, 972, 1134
HpyCH4V TGCA 4 cut(s) 478, 946, 961, 1070
HpyF3I CTNAG 2 cut(s) 436, 992
HpySE526I ACGT 4 cut(s) 46, 754, 972, 1134
Hsp92I GRCGYC 1 cut(s) 980
Hsp92II CATG 5 cut(s) 286, 611, 655, 664, 1035
HspAI GCGC 5 cut(s) 367, 400, 844, 906, 1171
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 4, 616, 816
LmnI GCTCC 6 cut(s) 226, 469, 715, 736, 841, 1152
Lsp1109I GCAGC 7 cut(s) 98, 113, 303, 337, 568, 1082, 1085
LweI GCATC 3 cut(s) 430, 921, 1084
MabI ACCWGGT 1 cut(s) 876
MaeI CTAG 2 cut(s) 698, 1191
MaeII ACGT 4 cut(s) 46, 754, 972, 1134
MaeIII GTNAC 5 cut(s) 529, 730, 868, 1046, 1160
MalI GATC 3 cut(s) 6, 618, 818
MboI GATC 3 cut(s) 4, 616, 816
MboII GAAGA 6 cut(s) 185, 229, 562, 580, 775, 940
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 720, 948, 1221
MluCI AATT 1 cut(s) 1105
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 444, 884
MroXI GAANNNNTTC 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 3 cut(s) 113, 312, 559
MspI CCGG 3 cut(s) 70, 504, 1203
MspR9I CCNGG 6 cut(s) 71, 185, 741, 821, 878, 968
MvaI CCWGG 5 cut(s) 185, 741, 821, 878, 968
MvnI CGCG 1 cut(s) 846
NciI CCSGG 1 cut(s) 71
NdeII GATC 3 cut(s) 4, 616, 816
NlaIII CATG 5 cut(s) 286, 611, 655, 664, 1035
NlaIV GGNNCC 4 cut(s) 6, 471, 502, 738
NmeAIII GCCGAG 3 cut(s) 373, 388, 1192
NmuCI GTSAC 4 cut(s) 529, 730, 868, 1160
NotI GCGGCCGC 1 cut(s) 140
PagI TCATGA 1 cut(s) 607
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 642
PdmI GAANNNNTTC 1 cut(s) 29
PleI GAGTC 1 cut(s) 383
PmaCI CACGTG 1 cut(s) 755
PmlI CACGTG 1 cut(s) 755
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 2 cut(s) 47, 755
Psp6I CCWGG 5 cut(s) 183, 739, 819, 876, 966
PspCI CACGTG 1 cut(s) 755
PspFI CCCAGC 3 cut(s) 113, 312, 1083
PspGI CCWGG 5 cut(s) 183, 739, 819, 876, 966
PspN4I GGNNCC 4 cut(s) 6, 471, 502, 738
PspPI GGNCC 3 cut(s) 256, 501, 823
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 1133
RsaNI GTAC 1 cut(s) 1132
RseI CAYNNNNRTG 1 cut(s) 612
Sau3AI GATC 3 cut(s) 4, 616, 816
Sau96I GGNCC 3 cut(s) 256, 501, 823
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 6 cut(s) 71, 185, 741, 821, 878, 968
SduI GDGCHC 3 cut(s) 720, 948, 1221
SexAI ACCWGGT 1 cut(s) 876
SfaNI GCATC 3 cut(s) 430, 921, 1084
SfcI CTRYAG 1 cut(s) 589
SinI GGWCC 3 cut(s) 256, 501, 823
SmiMI CAYNNNNRTG 1 cut(s) 612
Sse9I AATT 1 cut(s) 1105
SspMI CTAG 2 cut(s) 698, 1191
StyD4I CCNGG 6 cut(s) 69, 183, 739, 819, 876, 966
StyI CCWWGG 3 cut(s) 837, 864, 1078
TaaI ACNGT 4 cut(s) 241, 590, 680, 770
TaiI ACGT 4 cut(s) 49, 757, 975, 1137
TaqI TCGA 3 cut(s) 81, 983, 1092
TasI AATT 1 cut(s) 1105
TscAI CASTG 2 cut(s) 480, 953
TseFI GTSAC 4 cut(s) 529, 730, 868, 1160
TseI GCWGC 7 cut(s) 86, 101, 291, 350, 556, 1070, 1073
Tsp45I GTSAC 4 cut(s) 529, 730, 868, 1160
TspDTI ATGAA 4 cut(s) 65, 581, 677, 715
TspGWI ACGGA 2 cut(s) 749, 1139
TspRI CASTG 2 cut(s) 480, 953
VneI GTGCAC 1 cut(s) 944
VpaK11BI GGWCC 3 cut(s) 256, 501, 823
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 698, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.