AT5G63010

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012442
Physical Location & Seq
Forward (+)
25281676 .. 25283176
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63010.1

Sequence Viewer

Length: 1032 bp
ATGGACGCAGCAGATTGCTATCTCGAAGGAAACGCCGACGCCGTAGAATTCTGTCCTCACGAGTCTTACGCAAACTTGCTCGCAGCTTCGACTTATACACTTCAAGAAGGAGATTGTCCCTCTCGATCCGGGTCAGTGTATCTATTTGATGTCGGAGATGTTGAAGATGTTGGCTTGAATCTTATCCAGAAAATTGACACTGCTGGAGTTTTCGATATCCGGTGGAGTCGTGGTGGCGATGGAGGAGACGTGGCGCTTGCTCAGGCTGATGCTGATGGATGCTTGATAGTTTACAAGATAGATGAGACTGAAAGTAAAGGTACTCTGAGAGAAGTCTCCGGGAAAAGAATCAGCTCATCAATGTGTCTTTGTTTGGATTGGGATCCATCATCAACATCAATCGTTGTTGGTTTATCAGATGGCTCTGCTTCAGTTGTTTCATTCACGGATTCTAATCTAGAAACAGTTCAAGAATGGAAAGGGCATGACTTTGAGCTTTGGACGGCGTCATTCGATCTCAACAATCCTAATTTGGTCTATACTGGATCAGATGATTGCAAGTTCAGCTGTTGGGATATCAGAGATAGTCCGGCTGACAATCGGGTTTTTCAGAATTCCAAAGTTCATACAATGGGTGTTTGCTGTATTTCATCAAACCCAAGTGATCCTTACTCTATATTCACCGGAAGTTATGATGAAACCTTAAGAGTTTGGGACACGAGGTCTGTTTCGAGACCTCTGAACGAAACATCAGTGTCTTTAGGTGGTGGAGTGTGGAGAATCAAGCACCATCCTTCTCTGAGCGGTGTTGTATTGGCGGCTTGTATGCATAACGGTTTTGCTTTAGCGAAGGTTAGTGATGGGAAAGGTGAAGTGTTGGAGAGTTATAACAAGCATCATTCTCTTGCTTATGGAGCAGATTGGTACAGAGGGAAAGATCAGAAGCAAAGCGTTGTGGCAACTTGTTCGTTTTATGATCGGCTTCTTCGGGTATGGATGCCGATAACTGATTTTTCCACACGATGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

343

Amino Acids

37.53

Weight (kDa)

4.66

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_EIPR1 PF23609 44 - 238 2.6e-07 EIPR1 beta-propeller
Beta-prop_WDR5 PF25175 85 - 305 1.7e-11 WDR5 beta-propeller domain
WDR55 PF24796 86 - 241 1.8e-06 WDR55
Beta-prop_WDR3_1st PF25173 95 - 265 2.2e-09 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 108 - 247 4.6e-13 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 121 - 196 8.4e-07 THOC3 beta-propeller domain
WD40_Prp19 PF24814 172 - 289 7.4e-07 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 205 - 266 7.8e-06 THOC3 beta-propeller domain
WD40 PF00400 208 - 239 6.4e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012442)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63010
fragaria_vesca FvH4_5g05540 FvH4_5g05540
malus_domestica MD06G1171600.v1.1
prunus_persica Prupe.5G171000_v2.0.a1 Prupe.5G171000_v2.0.a1
pyrus_communis pycom06g15270
rosa_chinensis RchiOBHm_Chr7g0193241
rosa_laevigata RLG00000004284
rosa_multiflora Rmu_ssc0000092.1_g000021
rosa_roxburghii Rroxscaffold_3G00262260
rosa_rugosa Rorug07G0008400 Rorug07G0008400 Rorug07G0008400
rosa_samantha Rh7AG134000 Rh7BG135000 Rh7CG138000 Rh7DG136000
rosa_wichuraiana Rw7G011460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 804
AciI CCGC 2 cut(s) 804, 818
AclWI GGATC 5 cut(s) 120, 377, 390, 553, 659
AcsI RAATTY 2 cut(s) 47, 613
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 2 cut(s) 39, 506
AfaI GTAC 2 cut(s) 322, 926
AflII CTTAAG 1 cut(s) 703
AgsI TTSAA 4 cut(s) 104, 164, 178, 470
AhdI GACNNNNNGTC 1 cut(s) 721
AjiI CACGTC 1 cut(s) 250
AluBI AGCT 4 cut(s) 86, 354, 496, 567
AluI AGCT 4 cut(s) 86, 354, 496, 567
Alw26I GTCTC 4 cut(s) 240, 299, 340, 727
AlwI GGATC 5 cut(s) 120, 377, 390, 553, 659
ApeKI GCWGC 2 cut(s) 8, 83
ApoI RAATTY 2 cut(s) 47, 613
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 256
AsuC2I CCSGG 2 cut(s) 130, 340
AsuHPI GGTGA 2 cut(s) 673, 881
BamHI GGATCC 1 cut(s) 382
BauI CACGAG 2 cut(s) 59, 718
BbvI GCAGC 2 cut(s) 20, 95
BccI CCATC 6 cut(s) 233, 269, 394, 413, 798, 854
BceAI ACGGC 2 cut(s) 26, 519
BcgI CGANNNNNNTGC 2 cut(s) 948, 982
BcnI CCSGG 2 cut(s) 130, 340
BcoDI GTCTC 4 cut(s) 240, 299, 340, 727
BfaI CTAG 1 cut(s) 458
BfoI RGCGCY 1 cut(s) 257
BfrI CTTAAG 1 cut(s) 703
BisI GCNGC 3 cut(s) 9, 84, 819
BlsI GCNGC 3 cut(s) 10, 85, 820
Bme1390I CCNGG 2 cut(s) 130, 340
BmeRI GACNNNNNGTC 1 cut(s) 721
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 130, 340
BmsI GCATC 4 cut(s) 259, 269, 904, 987
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 130, 340
BsaBI GATNNNNATC 3 cut(s) 18, 381, 453
BsaHI GRCGYC 2 cut(s) 39, 506
BsaI GGTCTC 1 cut(s) 727
BsaWI WCCGGW 2 cut(s) 219, 683
BsaXI ACNNNNNCTCC 4 cut(s) 217, 234, 247, 264
Bse1I ACTGG 1 cut(s) 547
Bse8I GATNNNNATC 3 cut(s) 18, 381, 453
BseGI GGATG 3 cut(s) 284, 790, 1002
BseJI GATNNNNATC 3 cut(s) 18, 381, 453
BseMII CTCAG 3 cut(s) 275, 317, 791
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 20, 95
BsiSI CCGG 5 cut(s) 129, 220, 339, 590, 684
BslFI GGGAC 2 cut(s) 102, 728
BsmAI GTCTC 4 cut(s) 240, 299, 340, 727
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 102, 728
Bso31I GGTCTC 1 cut(s) 727
Bsp143I GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
BspACI CCGC 2 cut(s) 804, 818
BspCNI CTCAG 3 cut(s) 274, 318, 792
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 5 cut(s) 120, 377, 390, 553, 659
BspTI CTTAAG 1 cut(s) 703
BspTNI GGTCTC 1 cut(s) 727
BsrBI CCGCTC 1 cut(s) 804
BsrI ACTGG 1 cut(s) 547
BssMI GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
BssNI GRCGYC 2 cut(s) 39, 506
BssSI CACGAG 2 cut(s) 59, 718
Bst2BI CACGAG 2 cut(s) 59, 718
Bst4CI ACNGT 2 cut(s) 466, 836
BstACI GRCGYC 2 cut(s) 39, 506
BstAFI CTTAAG 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 81, 258
BstDEI CTNAG 3 cut(s) 261, 326, 800
BstF5I GGATG 3 cut(s) 284, 790, 1002
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 7 cut(s) 128, 385, 517, 548, 667, 940, 979
BstMAI GTCTC 4 cut(s) 240, 299, 340, 727
BstMBI GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
BstMWI GCNNNNNNNGC 2 cut(s) 564, 914
BstSCI CCNGG 2 cut(s) 128, 338
BstV1I GCAGC 2 cut(s) 20, 95
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 3 cut(s) 284, 790, 1002
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 141, 198, 759
Cac8I GCNNGC 2 cut(s) 81, 258
CfoI GCGC 1 cut(s) 256
CseI GACGC 3 cut(s) 14, 47, 495
Csp6I GTAC 2 cut(s) 321, 925
CviAII CATG 1 cut(s) 485
CviQI GTAC 2 cut(s) 321, 925
DdeI CTNAG 3 cut(s) 261, 326, 800
DpnI GATC 7 cut(s) 127, 384, 516, 547, 666, 939, 978
DpnII GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
DriI GACNNNNNGTC 1 cut(s) 721
Eam1105I GACNNNNNGTC 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 727
Eco32I GATATC 2 cut(s) 217, 577
Eco57I CTGAAG 1 cut(s) 414
EcoRI GAATTC 2 cut(s) 47, 613
EcoRV GATATC 2 cut(s) 217, 577
EcoT22I ATGCAT 1 cut(s) 831
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 1 cut(s) 488
FalI AAGNNNNNCTT 2 cut(s) 652, 684
FaqI GGGAC 2 cut(s) 102, 728
FatI CATG 1 cut(s) 484
Fnu4HI GCNGC 3 cut(s) 9, 84, 819
FokI GGATG 3 cut(s) 291, 777, 1009
Fsp4HI GCNGC 3 cut(s) 9, 84, 819
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 255
GluI GCNGC 3 cut(s) 9, 84, 819
GsuI CTGGAG 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 257
HapII CCGG 5 cut(s) 129, 220, 339, 590, 684
HgaI GACGC 3 cut(s) 14, 47, 495
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 2 cut(s) 39, 506
Hin1II CATG 1 cut(s) 488
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 6 cut(s) 62, 178, 226, 348, 449, 780
HpaII CCGG 5 cut(s) 129, 220, 339, 590, 684
HphI GGTGA 2 cut(s) 673, 881
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 9 cut(s) 155, 327, 418, 550, 581, 612, 741, 801, 942
Hpy188III TCNNGA 8 cut(s) 23, 59, 104, 123, 187, 458, 470, 732
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 20, 101, 804, 844
HpyCH4III ACNGT 2 cut(s) 466, 836
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 558, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 564, 914
HpyF3I CTNAG 3 cut(s) 261, 326, 800
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 2 cut(s) 39, 506
Hsp92II CATG 1 cut(s) 488
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
LmnI GCTCC 1 cut(s) 914
LpnPI CCDG 9 cut(s) 142, 189, 200, 233, 248, 352, 528, 603, 697
Lsp1109I GCAGC 2 cut(s) 20, 95
LweI GCATC 4 cut(s) 259, 269, 904, 987
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 249
MalI GATC 7 cut(s) 127, 384, 516, 547, 666, 939, 978
MbiI CCGCTC 1 cut(s) 804
MboI GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
MboII GAAGA 2 cut(s) 176, 977
MflI RGATCY 1 cut(s) 382
MluCI AATT 4 cut(s) 47, 192, 529, 613
MlyI GAGTC 2 cut(s) 71, 235
MmeI TCCRAC 2 cut(s) 133, 858
MnlI CCTC 6 cut(s) 66, 130, 236, 714, 747, 923
Mph1103I ATGCAT 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 704
MslI CAYNNNNRTG 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 567
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 5 cut(s) 129, 220, 339, 590, 684
MspR9I CCNGG 2 cut(s) 130, 340
MwoI GCNNNNNNNGC 2 cut(s) 564, 914
NciI CCSGG 2 cut(s) 130, 340
NdeII GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 1 cut(s) 384
NsiI ATGCAT 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 178, 348, 449, 780
PflFI GACNNNGTC 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 3 cut(s) 10, 85, 820
PleI GAGTC 2 cut(s) 70, 234
PpsI GAGTC 2 cut(s) 70, 234
PsiI TTATAA 1 cut(s) 888
PspN4I GGNNCC 1 cut(s) 384
PsuI RGATCY 1 cut(s) 382
PsyI GACNNNGTC 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 322, 926
RsaNI GTAC 2 cut(s) 321, 925
RseI CAYNNNNRTG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 704
SatI GCNGC 3 cut(s) 9, 84, 819
Sau3AI GATC 7 cut(s) 125, 382, 514, 545, 664, 937, 976
SchI GAGTC 2 cut(s) 71, 235
ScrFI CCNGG 2 cut(s) 130, 340
SfaNI GCATC 4 cut(s) 259, 269, 904, 987
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 4 cut(s) 47, 192, 529, 613
SsiI CCGC 2 cut(s) 804, 818
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 2 cut(s) 128, 338
TaaI ACNGT 2 cut(s) 466, 836
TaiI ACGT 1 cut(s) 252
TaqI TCGA 6 cut(s) 24, 89, 124, 213, 513, 731
TasI AATT 4 cut(s) 47, 192, 529, 613
TauI GCSGC 1 cut(s) 821
TfiI GAWTC 4 cut(s) 178, 348, 449, 780
Tru1I TTAA 1 cut(s) 704
Tru9I TTAA 1 cut(s) 704
TscAI CASTG 3 cut(s) 141, 205, 759
TseI GCWGC 2 cut(s) 8, 83
TspDTI ATGAA 4 cut(s) 429, 614, 639, 711
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 3 cut(s) 141, 205, 759
Tth111I GACNNNGTC 1 cut(s) 505
Vha464I CTTAAG 1 cut(s) 703
XapI RAATTY 2 cut(s) 47, 613
XbaI TCTAGA 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.