Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000092.1

Orthogroup ID

OG0012442

Physical Location & Seq

Genomic Coordinates Forward (+)

105388 .. 106650

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000092.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggatttagcaaattgctgcttggagggaaatgctgatgcggtggagttttgtccgcacgaatcgtatcgccatgttctggcggcttcaacttacacattgcaagagggcgatcagccgagtcgagcaggaagcatatcgcttttcagtgttgatgctgacacggctcgcctggatttgtgtcagcgcattgcaacggtgggaatctttgatataaagtggaacccagttggagagtgcggtgatcctcttctcgctcaagctgatgctgatggctacttgagaattctcagtcttgggtcctcttcagatgaagcaaaagggttttctttgagagagatagctgacgaaaaggtcagttcttccatgtgccttttcctggattggaacccttcagccacatccatcaccgtggggctttcggatggttctgtctcgatagtttcagtgggggagtcgcagctggagactcaagaatcgtggaaagcgcatgattttgaggtttggacaacctcatttgatacccaccagccccagttagtatacagcggctcagatgactgcaaattcaaatgctgggatttgcgagatggtccatcgaagttggcatttcagaattccaaggtccatacaatgggagttacttgcatagccaaaaaccccaacgaccccaatactgtacttactggtagctatgatgagtacctaagggtatgggatgtaagatcaatatcaaaaccagttaatgaaacgtctacttgtttaggaggaggagtctggagaatcaagtaccatccgtttgtaagcggtctagtcttggcagcttgtatgcacaatggcttttctattgtcaagatttatggggataaaactgaagtcattgaaacatacactaagcatgagtcacttgcatatggagctgattggcatagagaggtatcattccatgaaggcaaagaaaatagcactttagtcgcaacgtgctcgttttatgaccgccttctccggatatggatgcccaaaagtgatttgaagttgcaccaggacattttgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

352

Amino Acids

38.98

Weight (kDa)

4.95

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63010
fragaria_vesca	FvH4_5g05540 FvH4_5g05540
malus_domestica	MD06G1171600.v1.1
prunus_persica	Prupe.5G171000_v2.0.a1 Prupe.5G171000_v2.0.a1
pyrus_communis	pycom06g15270
rosa_chinensis	RchiOBHm_Chr7g0193241
rosa_laevigata	RLG00000004284
rosa_multiflora	Rmu_ssc0000092.1_g000021
rosa_roxburghii	Rroxscaffold_3G00262260
rosa_rugosa	Rorug07G0008400 Rorug07G0008400 Rorug07G0008400
rosa_samantha	Rh7AG134000 Rh7BG135000 Rh7CG138000 Rh7DG136000
rosa_wichuraiana	Rw7G011460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccB7I	CCANNNNNTGG	2 cut(s)	79, 634
AccI	GTMKAC	2 cut(s)	543, 755
AccIII	TCCGGA	1 cut(s)	1005
AciI	CCGC	7 cut(s)	41, 56, 83, 240, 549, 807, 997
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	3 cut(s)	285, 566, 616
AcuI	CTGAAG	3 cut(s)	291, 378, 894
AfaI	GTAC	3 cut(s)	681, 704, 791
AfiI	CCNNNNNNNGG	3 cut(s)	79, 379, 634
AgsI	TTSAA	4 cut(s)	90, 571, 884, 1033
AjnI	CCWGG	3 cut(s)	171, 378, 1041
AluBI	AGCT	6 cut(s)	263, 344, 463, 693, 824, 920
AluI	AGCT	6 cut(s)	263, 344, 463, 693, 824, 920
Alw21I	GWGCWC	1 cut(s)	986
Alw26I	GTCTC	2 cut(s)	439, 461
AlwI	GGATC	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	1005
ApeKI	GCWGC	3 cut(s)	18, 460, 821
ApoI	RAATTY	3 cut(s)	285, 566, 616
AspLEI	GCGC	2 cut(s)	189, 490
AspS9I	GGNCC	3 cut(s)	300, 593, 625
AsuHPI	GGTGA	2 cut(s)	254, 400
AvaII	GGWCC	3 cut(s)	300, 593, 625
AxyI	CCTNAGG	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	986
BbvI	GCAGC	3 cut(s)	5, 472, 833
BccI	CCATC	6 cut(s)	266, 413, 419, 584, 604, 801
BceAI	ACGGC	1 cut(s)	180
BcgI	CGANNNNNNTGC	4 cut(s)	955, 966, 989, 1000
BciT130I	CCWGG	3 cut(s)	173, 380, 1043
BcoDI	GTCTC	2 cut(s)	439, 461
BfaI	CTAG	1 cut(s)	812
BisI	GCNGC	5 cut(s)	19, 84, 461, 550, 822
BlsI	GCNGC	5 cut(s)	20, 85, 462, 551, 823
Bme1390I	CCNGG	3 cut(s)	173, 380, 1043
Bme18I	GGWCC	3 cut(s)	300, 593, 625
BmgT120I	GGNCC	3 cut(s)	300, 593, 625
BmiI	GGNNCC	3 cut(s)	224, 301, 389
BmrFI	CCNGG	3 cut(s)	173, 380, 1043
BmrI	ACTGGG	2 cut(s)	221, 529
BmsI	GCATC	4 cut(s)	28, 145, 256, 1005
BmuI	ACTGGG	2 cut(s)	221, 529
BpmI	CTGGAG	2 cut(s)	485, 799
BpuEI	CTTGAG	3 cut(s)	243, 301, 456
BsaBI	GATNNNNATC	1 cut(s)	730
BsaJI	CCNNGG	2 cut(s)	411, 621
BsaWI	WCCGGW	1 cut(s)	1005
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 379, 634
Bse1I	ACTGG	4 cut(s)	227, 535, 691, 740
Bse21I	CCTNAGG	1 cut(s)	707
Bse3DI	GCAATG	2 cut(s)	98, 189
Bse8I	GATNNNNATC	1 cut(s)	730
BseAI	TCCGGA	1 cut(s)	1005
BseBI	CCWGG	3 cut(s)	173, 380, 1043
BseDI	CCNNGG	2 cut(s)	411, 621
BseGI	GGATG	5 cut(s)	401, 430, 724, 793, 1020
BseJI	GATNNNNATC	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	79, 379, 634
BseMI	GCAATG	2 cut(s)	98, 189
BseMII	CTCAG	2 cut(s)	304, 567
BseNI	ACTGG	4 cut(s)	227, 535, 691, 740
BseRI	GAGGAG	2 cut(s)	783, 786
BseXI	GCAGC	3 cut(s)	5, 472, 833
BseYI	CCCAGC	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	986
BsiSI	CCGG	1 cut(s)	1006
BslI	CCNNNNNNNGG	3 cut(s)	79, 379, 634
BsmAI	GTCTC	2 cut(s)	439, 461
Bsp1286I	GDGCHC	1 cut(s)	986
Bsp13I	TCCGGA	1 cut(s)	1005
Bsp143I	GATC	3 cut(s)	112, 244, 725
BspACI	CCGC	7 cut(s)	41, 56, 83, 240, 549, 807, 997
BspCNI	CTCAG	2 cut(s)	303, 566
BspEI	TCCGGA	1 cut(s)	1005
BspLI	GGNNCC	3 cut(s)	224, 301, 389
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	98, 189
BsrI	ACTGG	4 cut(s)	227, 535, 691, 740
BssECI	CCNNGG	2 cut(s)	411, 621
BssMI	GATC	3 cut(s)	112, 244, 725
BssNAI	GTATAC	1 cut(s)	544
BssT1I	CCWWGG	1 cut(s)	621
Bst1107I	GTATAC	1 cut(s)	544
Bst2UI	CCWGG	3 cut(s)	173, 380, 1043
Bst4CI	ACNGT	3 cut(s)	199, 412, 679
Bst6I	CTCTTC	2 cut(s)	255, 310
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	4 cut(s)	290, 553, 707, 894
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	5 cut(s)	401, 430, 724, 793, 1020
BstHHI	GCGC	2 cut(s)	189, 490
BstKTI	GATC	3 cut(s)	115, 247, 728
BstMAI	GTCTC	2 cut(s)	439, 461
BstMBI	GATC	3 cut(s)	112, 244, 725
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 917
BstNI	CCWGG	3 cut(s)	173, 380, 1043
BstSCI	CCNGG	3 cut(s)	171, 378, 1041
BstV1I	GCAGC	3 cut(s)	5, 472, 833
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstZ17I	GTATAC	1 cut(s)	544
Bsu36I	CCTNAGG	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	5 cut(s)	401, 430, 724, 793, 1020
BtsIMutI	CAGTG	2 cut(s)	154, 453
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	2 cut(s)	189, 490
Cfr13I	GGNCC	3 cut(s)	300, 593, 625
Csp6I	GTAC	3 cut(s)	680, 703, 790
CspCI	CAANNNNNGTGG	2 cut(s)	461, 496
CviAII	CATG	5 cut(s)	74, 367, 491, 899, 947
CviQI	GTAC	3 cut(s)	680, 703, 790
DdeI	CTNAG	4 cut(s)	290, 553, 707, 894
DpnI	GATC	3 cut(s)	114, 246, 727
DpnII	GATC	3 cut(s)	112, 244, 725
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	255, 310
EarI	CTCTTC	2 cut(s)	255, 310
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	3 cut(s)	300, 593, 625
Eco57I	CTGAAG	3 cut(s)	291, 378, 894
Eco81I	CCTNAGG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRI	GAATTC	2 cut(s)	285, 616
EcoRII	CCWGG	3 cut(s)	171, 378, 1041
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	5 cut(s)	77, 370, 494, 902, 950
FatI	CATG	5 cut(s)	73, 366, 490, 898, 946
FauNDI	CATATG	1 cut(s)	913
FblI	GTMKAC	2 cut(s)	543, 755
Fnu4HI	GCNGC	5 cut(s)	19, 84, 461, 550, 822
FokI	GGATG	5 cut(s)	388, 437, 731, 780, 1027
Fsp4HI	GCNGC	5 cut(s)	19, 84, 461, 550, 822
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	2 cut(s)	188, 489
GluI	GCNGC	5 cut(s)	19, 84, 461, 550, 822
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	2 cut(s)	485, 799
HapII	CCGG	1 cut(s)	1006
HhaI	GCGC	2 cut(s)	189, 490
Hin1II	CATG	5 cut(s)	77, 370, 494, 902, 950
Hin6I	GCGC	2 cut(s)	187, 488
HinP1I	GCGC	2 cut(s)	187, 488
HinfI	GANTC	9 cut(s)	62, 121, 204, 455, 469, 476, 774, 783, 902
HpaII	CCGG	1 cut(s)	1006
HphI	GGTGA	2 cut(s)	254, 400
Hpy166II	GTNNAC	2 cut(s)	544, 756
Hpy188I	TCNGA	4 cut(s)	310, 424, 556, 615
Hpy188III	TCNNGA	5 cut(s)	436, 473, 778, 853, 1006
Hpy8I	GTNNAC	2 cut(s)	544, 756
HpyAV	CCTTC	3 cut(s)	402, 944, 1010
HpyCH4III	ACNGT	3 cut(s)	199, 412, 679
HpyCH4IV	ACGT	2 cut(s)	752, 980
HpyCH4V	TGCA	7 cut(s)	103, 194, 564, 648, 832, 911, 1039
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 917
HpyF3I	CTNAG	4 cut(s)	290, 553, 707, 894
HpySE526I	ACGT	2 cut(s)	752, 980
Hsp92II	CATG	5 cut(s)	77, 370, 494, 902, 950
HspAI	GCGC	2 cut(s)	187, 488
Kpn2I	TCCGGA	1 cut(s)	1005
Kzo9I	GATC	3 cut(s)	112, 244, 725
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	3 cut(s)	5, 472, 833
LweI	GCATC	4 cut(s)	28, 145, 256, 1005
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	2 cut(s)	752, 980
MaeIII	GTNAC	2 cut(s)	640, 903
MalI	GATC	3 cut(s)	114, 246, 727
MboI	GATC	3 cut(s)	112, 244, 725
MboII	GAAGA	3 cut(s)	242, 297, 354
MhlI	GDGCHC	1 cut(s)	986
MluCI	AATT	4 cut(s)	13, 285, 566, 616
MlyI	GAGTC	5 cut(s)	130, 463, 464, 783, 911
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	9 cut(s)	19, 100, 258, 313, 493, 523, 761, 764, 928
MroI	TCCGGA	1 cut(s)	1005
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	463, 549
MspI	CCGG	1 cut(s)	1006
MspR9I	CCNGG	3 cut(s)	173, 380, 1043
MvaI	CCWGG	3 cut(s)	173, 380, 1043
MwoI	GCNNNNNNNGC	2 cut(s)	164, 917
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	3 cut(s)	112, 244, 725
NlaIII	CATG	5 cut(s)	77, 370, 494, 902, 950
NlaIV	GGNNCC	3 cut(s)	224, 301, 389
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	903
PfeI	GAWTC	4 cut(s)	62, 204, 476, 783
PflMI	CCANNNNNTGG	2 cut(s)	79, 634
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	5 cut(s)	20, 85, 462, 551, 823
PleI	GAGTC	5 cut(s)	129, 463, 463, 782, 910
PpsI	GAGTC	5 cut(s)	129, 463, 463, 782, 910
PpuMI	RGGWCCY	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	3 cut(s)	171, 378, 1041
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	3 cut(s)	171, 378, 1041
PspN4I	GGNNCC	3 cut(s)	224, 301, 389
PspPI	GGNCC	3 cut(s)	300, 593, 625
PspPPI	RGGWCCY	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	3 cut(s)	681, 704, 791
RsaNI	GTAC	3 cut(s)	680, 703, 790
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	5 cut(s)	19, 84, 461, 550, 822
Sau3AI	GATC	3 cut(s)	112, 244, 725
Sau96I	GGNCC	3 cut(s)	300, 593, 625
SchI	GAGTC	5 cut(s)	130, 463, 464, 783, 911
ScrFI	CCNGG	3 cut(s)	173, 380, 1043
SduI	GDGCHC	1 cut(s)	986
SfaNI	GCATC	4 cut(s)	28, 145, 256, 1005
SinI	GGWCC	3 cut(s)	300, 593, 625
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	3 cut(s)	258, 280, 471
SmoI	CTYRAG	3 cut(s)	258, 280, 471
Sse9I	AATT	4 cut(s)	13, 285, 566, 616
SsiI	CCGC	7 cut(s)	41, 56, 83, 240, 549, 807, 997
SspMI	CTAG	1 cut(s)	812
StyD4I	CCNGG	3 cut(s)	171, 378, 1041
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	3 cut(s)	199, 412, 679
TaiI	ACGT	2 cut(s)	755, 983
TaqI	TCGA	3 cut(s)	124, 437, 599
TasI	AATT	4 cut(s)	13, 285, 566, 616
TatI	WGTACW	1 cut(s)	679
TauI	GCSGC	2 cut(s)	86, 552
TfiI	GAWTC	4 cut(s)	62, 204, 476, 783
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	2 cut(s)	154, 453
TseFI	GTSAC	1 cut(s)	903
TseI	GCWGC	3 cut(s)	18, 460, 821
Tsp45I	GTSAC	1 cut(s)	903
TspDTI	ATGAA	3 cut(s)	327, 762, 963
TspGWI	ACGGA	1 cut(s)	786
TspRI	CASTG	2 cut(s)	154, 453
Van91I	CCANNNNNTGG	2 cut(s)	79, 634
VpaK11BI	GGWCC	3 cut(s)	300, 593, 625
XapI	RAATTY	3 cut(s)	285, 566, 616
XmiI	GTMKAC	2 cut(s)	543, 755
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.