Prupe.5G171000_v2.0.a1

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012442
Physical Location & Seq
Reverse (-)
14622969 .. 14624961
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G171000.2

Sequence Viewer

Length: 1053 bp
ATGGATGTGGCACATTGCAATTTAGACGGCAATGCTGACGCCGTTGAATTTTGTCCACACGACTCGTACCACCATGTCTTGGCAGCTTCAACGTACACATTGCAAGAGGGTGATCGGCCGAGCCGAGCTGGGAGCATATCACTTTTCAATGTTGATGCTGATTTGGGTCGCCTTGATTTGTTTCACCGGATTGAAACGGCGGGTATCTTTGATATAAAGTGGAACCCGGTTGGAGGCTCTGTGAGTCCTCTTCTTGCTCAAGCTGATGCTGATGGTTACTTGAGAATTCATGGTCTTGAGTGCTGTTCAGATGAAGCACGAGCAGGGTTTTCTTTGAGAGAGATAACTGATGAAAAAATCAGTTCTGCCATGTGCCTTTGCCTGGACTGGAACCCTTCAGCTACGTCTATAACTGTGGGGCTATCGGATGGTTCGGTCTCGATAGCTTCTATAGTGGAATCCCAACTAGAGACACAAGAACTATGGAAAGCGCATGACTTTGAAGTTTGGGCAGCTTCATTTGATACTCACCAACCCCAGTTAGTATACTCTGGTTCAGATGACTGCAAATTCAGTTGTTGGGATTTGCGAGACTGCCCTTCCAAGTTGGCATTTCAGAATACCAAGGTTCATACAATGGGAGTTTGCTGCATAGTCAAAAACCCCAACGACCCGAATACCGTACTTACTGGTAGCTATGATGAATACCTGAGGGTATGGGATGTAAGATCAATATCAAGACCAGTTAATGAAACCTCAATTTGCCTAGGAGGAGGAGTGTGGAGGATCAAGTACCATCCATTTGTAAGTGGTCTAGTCTTGACAGCTTGTATGCACAACGGATTTTCAGTTGTCAAGATTAATGGGGACAAAGCTGAAGTAATTGAAACATACAGTAAGCATGAGTCACTTGCATATGGAGCTGACTGGCACAGAGAGAAATCGTTTCGTGAAGGCAAAAGGAATAGCACTTTAGTTGCTACTTGCTCGTTTTATGACCGGCTTCTTCGCTTGTGGATGCCAGAAAGTGTTTTGCAGGATTCTGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

351

Amino Acids

38.84

Weight (kDa)

5.12

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012442)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63010
fragaria_vesca FvH4_5g05540 FvH4_5g05540
malus_domestica MD06G1171600.v1.1
prunus_persica Prupe.5G171000_v2.0.a1 Prupe.5G171000_v2.0.a1
pyrus_communis pycom06g15270
rosa_chinensis RchiOBHm_Chr7g0193241
rosa_laevigata RLG00000004284
rosa_multiflora Rmu_ssc0000092.1_g000021
rosa_roxburghii Rroxscaffold_3G00262260
rosa_rugosa Rorug07G0008400 Rorug07G0008400 Rorug07G0008400
rosa_samantha Rh7AG134000 Rh7BG135000 Rh7CG138000 Rh7DG136000
rosa_wichuraiana Rw7G011460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AccI GTMKAC 1 cut(s) 546
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 794
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 3 cut(s) 47, 285, 569
AcuI CTGAAG 2 cut(s) 381, 897
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 4 cut(s) 68, 95, 684, 794
AfiI CCNNNNNNNGG 3 cut(s) 79, 233, 382
AgsI TTSAA 6 cut(s) 47, 90, 148, 194, 503, 887
AjnI CCWGG 1 cut(s) 381
Alw26I GTCTC 3 cut(s) 442, 464, 585
AlwI GGATC 1 cut(s) 794
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 3 cut(s) 83, 512, 648
ApoI RAATTY 3 cut(s) 47, 285, 569
AseI ATTAAT 1 cut(s) 861
AspA2I CCTAGG 1 cut(s) 766
AspLEI GCGC 1 cut(s) 493
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 122, 176, 521
AvrII CCTAGG 1 cut(s) 766
AxyI CCTNAGG 1 cut(s) 710
BauI CACGAG 1 cut(s) 318
BbvI GCAGC 3 cut(s) 95, 524, 635
BccI CCATC 3 cut(s) 266, 422, 804
BceAI ACGGC 3 cut(s) 26, 43, 213
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 442, 464, 585
BfaI CTAG 3 cut(s) 467, 767, 815
BfmI CTRYAG 1 cut(s) 450
BisI GCNGC 3 cut(s) 84, 513, 649
BlnI CCTAGG 1 cut(s) 766
BlsI GCNGC 3 cut(s) 85, 514, 650
Bme1390I CCNGG 2 cut(s) 227, 383
BmiI GGNNCC 2 cut(s) 224, 392
BmrFI CCNGG 2 cut(s) 227, 383
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 3 cut(s) 145, 256, 1008
BmuI ACTGGG 1 cut(s) 532
BpuEI CTTGAG 3 cut(s) 243, 301, 317
BpuMI CCSGG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 733
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 624, 766
BsaWI WCCGGW 1 cut(s) 186
BsaXI ACNNNNNCTCC 4 cut(s) 225, 255, 762, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 233, 382
Bse118I RCCGGY 1 cut(s) 999
Bse1I ACTGG 5 cut(s) 392, 538, 694, 743, 932
Bse21I CCTNAGG 1 cut(s) 710
Bse3DI GCAATG 3 cut(s) 13, 37, 98
Bse8I GATNNNNATC 1 cut(s) 733
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 624, 766
BseGI GGATG 5 cut(s) 10, 433, 727, 796, 1023
BseJI GATNNNNATC 1 cut(s) 733
BseLI CCNNNNNNNGG 3 cut(s) 79, 233, 382
BseMI GCAATG 3 cut(s) 13, 37, 98
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 5 cut(s) 392, 538, 694, 743, 932
BseRI GAGGAG 2 cut(s) 786, 789
BseX3I CGGCCG 1 cut(s) 116
BseXI GCAGC 3 cut(s) 95, 524, 635
BseYI CCCAGC 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 187, 227, 1000
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 3 cut(s) 79, 233, 382
BsmAI GTCTC 3 cut(s) 442, 464, 585
BsmFI GGGAC 1 cut(s) 881
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 442
Bsp143I GATC 3 cut(s) 112, 728, 786
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 702
BspLI GGNNCC 2 cut(s) 224, 392
BspPI GGATC 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 3 cut(s) 13, 37, 98
BsrFI RCCGGY 1 cut(s) 999
BsrI ACTGG 5 cut(s) 392, 538, 694, 743, 932
BssAI RCCGGY 1 cut(s) 999
BssECI CCNNGG 2 cut(s) 624, 766
BssMI GATC 3 cut(s) 112, 728, 786
BssNAI GTATAC 1 cut(s) 547
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 2 cut(s) 624, 766
Bst1107I GTATAC 1 cut(s) 547
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 3 cut(s) 415, 682, 896
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 710
BstF5I GGATG 5 cut(s) 10, 433, 727, 796, 1023
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 3 cut(s) 115, 731, 789
BstMAI GTCTC 3 cut(s) 442, 464, 585
BstMBI GATC 3 cut(s) 112, 728, 786
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 920
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 225, 381
BstSFI CTRYAG 1 cut(s) 450
BstV1I GCAGC 3 cut(s) 95, 524, 635
BstZ17I GTATAC 1 cut(s) 547
BstZI CGGCCG 1 cut(s) 116
Bsu36I CCTNAGG 1 cut(s) 710
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 5 cut(s) 10, 433, 727, 796, 1023
CfoI GCGC 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 999
CseI GACGC 1 cut(s) 47
Csp6I GTAC 4 cut(s) 67, 94, 683, 793
CviAII CATG 5 cut(s) 74, 290, 370, 494, 902
CviQI GTAC 4 cut(s) 67, 94, 683, 793
DdeI CTNAG 1 cut(s) 710
DpnI GATC 3 cut(s) 114, 730, 788
DpnII GATC 3 cut(s) 112, 728, 786
EaeI YGGCCR 1 cut(s) 116
EagI CGGCCG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EclXI CGGCCG 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 624, 766
Eco31I GGTCTC 1 cut(s) 442
Eco52I CGGCCG 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 381, 897
Eco81I CCTNAGG 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 624, 766
ErhI CCWWGG 2 cut(s) 624, 766
FaeI CATG 5 cut(s) 77, 293, 373, 497, 905
FaqI GGGAC 1 cut(s) 881
FatI CATG 5 cut(s) 73, 289, 369, 493, 901
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 916
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 84, 513, 649
FokI GGATG 5 cut(s) 17, 440, 734, 783, 1030
Fsp4HI GCNGC 3 cut(s) 84, 513, 649
FspBI CTAG 3 cut(s) 467, 767, 815
GlaI GCGC 1 cut(s) 492
GluI GCNGC 3 cut(s) 84, 513, 649
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 118
HapII CCGG 3 cut(s) 187, 227, 1000
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 493
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 5 cut(s) 77, 293, 373, 497, 905
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HinfI GANTC 5 cut(s) 62, 244, 458, 905, 1040
HpaII CCGG 3 cut(s) 187, 227, 1000
HphI GGTGA 3 cut(s) 122, 176, 521
Hpy166II GTNNAC 3 cut(s) 56, 96, 547
Hpy188I TCNGA 4 cut(s) 310, 427, 559, 618
Hpy188III TCNNGA 6 cut(s) 296, 439, 738, 820, 856, 950
Hpy8I GTNNAC 3 cut(s) 56, 96, 547
HpyAV CCTTC 3 cut(s) 405, 609, 947
HpyCH4III ACNGT 3 cut(s) 415, 682, 896
HpyCH4IV ACGT 2 cut(s) 92, 404
HpyCH4V TGCA 7 cut(s) 18, 103, 567, 651, 835, 914, 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 920
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 2 cut(s) 92, 404
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 5 cut(s) 77, 293, 373, 497, 905
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 3 cut(s) 112, 728, 786
LmnI GCTCC 2 cut(s) 132, 920
Lsp1109I GCAGC 3 cut(s) 95, 524, 635
LweI GCATC 3 cut(s) 145, 256, 1008
MaeI CTAG 3 cut(s) 467, 767, 815
MaeII ACGT 2 cut(s) 92, 404
MaeIII GTNAC 2 cut(s) 275, 906
MalI GATC 3 cut(s) 114, 730, 788
MboI GATC 3 cut(s) 112, 728, 786
MboII GAAGA 2 cut(s) 242, 998
MluCI AATT 6 cut(s) 19, 47, 285, 569, 759, 882
MlyI GAGTC 3 cut(s) 56, 253, 914
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 8 cut(s) 100, 227, 258, 705, 764, 766, 767, 777
MseI TTAA 2 cut(s) 747, 861
MspI CCGG 3 cut(s) 187, 227, 1000
MspR9I CCNGG 2 cut(s) 227, 383
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 920
NciI CCSGG 1 cut(s) 227
NdeI CATATG 1 cut(s) 916
NdeII GATC 3 cut(s) 112, 728, 786
NlaIII CATG 5 cut(s) 77, 293, 373, 497, 905
NlaIV GGNNCC 2 cut(s) 224, 392
NmeAIII GCCGAG 2 cut(s) 144, 149
NmuCI GTSAC 1 cut(s) 906
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 2 cut(s) 458, 1040
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 3 cut(s) 85, 514, 650
PleI GAGTC 3 cut(s) 56, 252, 913
PpsI GAGTC 3 cut(s) 56, 252, 913
PshBI ATTAAT 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 224, 392
RsaI GTAC 4 cut(s) 68, 95, 684, 794
RsaNI GTAC 4 cut(s) 67, 94, 683, 793
SaqAI TTAA 2 cut(s) 747, 861
SatI GCNGC 3 cut(s) 84, 513, 649
Sau3AI GATC 3 cut(s) 112, 728, 786
SchI GAGTC 3 cut(s) 56, 253, 914
ScrFI CCNGG 2 cut(s) 227, 383
SfaNI GCATC 3 cut(s) 145, 256, 1008
SfcI CTRYAG 1 cut(s) 450
SmlI CTYRAG 3 cut(s) 258, 280, 296
SmoI CTYRAG 3 cut(s) 258, 280, 296
Sse9I AATT 6 cut(s) 19, 47, 285, 569, 759, 882
SsiI CCGC 1 cut(s) 200
SspMI CTAG 3 cut(s) 467, 767, 815
StyD4I CCNGG 2 cut(s) 225, 381
StyI CCWWGG 2 cut(s) 624, 766
TaaI ACNGT 3 cut(s) 415, 682, 896
TaiI ACGT 2 cut(s) 95, 407
TaqI TCGA 1 cut(s) 440
TaqII GACCGA 1 cut(s) 424
TasI AATT 6 cut(s) 19, 47, 285, 569, 759, 882
TfiI GAWTC 2 cut(s) 458, 1040
Tru1I TTAA 2 cut(s) 747, 861
Tru9I TTAA 2 cut(s) 747, 861
TseFI GTSAC 1 cut(s) 906
TseI GCWGC 3 cut(s) 83, 512, 648
Tsp45I GTSAC 1 cut(s) 906
TspDTI ATGAA 7 cut(s) 278, 327, 366, 507, 620, 717, 765
TspGWI ACGGA 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 79
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 3 cut(s) 47, 285, 569
XmaJI CCTAGG 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 3 cut(s) 467, 767, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.