Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005125

Physical Location & Seq

Genomic Coordinates Reverse (-)

25606771 .. 25609306

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAACATGAGCAATAAACGTAATCAGCAACCTTCGTATATTGCTGATCATTTCAGCAGTTTGGATCAGGTGATAACTTCTCTGAGAGAAGCTGGACTTGAATCTTCAAATCTGATTCTAGGAATTGACTTTACCAAGAGCAATGAGTGGACAGGGAGATATTCATTCAATAGAAAAAGCCTTCATGCCATTGGTAAAAGACAGAATCCATATGAGAAAGCAATATCGATTATTGGTCGTACTTTGTCTCCCTTTGATGAAGATGATCTTATACCTTGTTTCGGTTTTGGCGATGTAACAACGCGAGATCAATATGTATTCAGCTTTTATCCCGAGAACAAAAGCTGCGACGGATTGGAAAACGCAGTTAAAAGATATAGAGAGATTGTCCCACATTTGAAGTTGTCCGGTCCTACCTCGTTTGCACCGGTTATTGATGCTGCCATCAACATAGTTGAGCAGAACAATATGCAATACCATGTTCTCGTCATTATCGCAGATGGTCAGGTCACAAGAAATCCAGATGTGCCGCTTGGTCGACTTAGTCCACAGGAAGAAGCTACTATGAACTCGATAATGGCAGCGAGCCATTACCCATTGTCGATAGTCTTGGTTGGAGTAGGAGATGGACCATGGGACACAATGAAACAATTCGATGACAATATTCCTCACCGTGAATTCGATAACTTCCAGTTTGTAAACTTCACGAAGATAATGTCAGAGCACAAAGATGCGGCTAAGAAGGAGGCTGCTTTCGCACTCGCAGCTCTCATGGAGATCCCTTTTCAATACAAGGCTACATTAAGTCTCAATAGAAAACCAGTGCGCAGTTCCCATCAGCACCACAAGCCACTCCCGCCACCACCAGAGGTTATAGAGCGTGACAATGCTGTTAGATCGGTGCCAAATCAGATGACAGAAACTGCAGAGAAAAGTGACAGACTCGCTCCTTCCACAGTGCCGGTATGCCCGATTTGCTTGACGAATCCAAAGGACATGGCTTTTAGCTGCGGTCACACGACATGCAAGGAATGCGGAGTTGTTATCACAACATGCCCACTATGCAGACAACCAATAACAACAAGGATAAGGCTGTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

367

Amino Acids

41.19

Weight (kDa)

6.6

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	60 - 272	1.2e-74	Copine
zf-C3HC4_3	PF13920	322 - 361	1.2e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63970 AT5G63970
fragaria_vesca	FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670
malus_domestica	MD16G1282700.v1.1
prunus_persica	Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122151
rosa_laevigata	RLG00000018654
rosa_multiflora	Rmu_sc0000805.1_g000043 Rmu_sc0004574.1_g000050
rosa_roxburghii	Rroxscaffold_2G00121990
rosa_rugosa	Rorug02G0236600
rosa_samantha	Rh2AG293400 Rh2BG303800 Rh2CG282100 Rh2DG317300
rosa_wichuraiana	Rw2G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	538
AccII	CGCG	1 cut(s)	304
AciI	CCGC	5 cut(s)	530, 734, 857, 1011, 1035
AclWI	GGATC	2 cut(s)	72, 772
AcsI	RAATTY	1 cut(s)	677
AfaI	GTAC	2 cut(s)	241, 1097
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	101, 108, 169, 400, 788
AluBI	AGCT	6 cut(s)	92, 324, 345, 560, 767, 1008
AluI	AGCT	6 cut(s)	92, 324, 345, 560, 767, 1008
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	2 cut(s)	252, 812
AlwI	GGATC	2 cut(s)	72, 772
AlwNI	CAGNNNCTG	1 cut(s)	923
Ama87I	CYCGRG	1 cut(s)	332
ApeKI	GCWGC	6 cut(s)	345, 440, 581, 749, 764, 1008
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AsiGI	ACCGGT	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	2 cut(s)	410, 629
AsuHPI	GGTGA	2 cut(s)	82, 662
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	410, 629
BanI	GGYRCC	1 cut(s)	901
Bbv12I	GWGCWC	1 cut(s)	726
BbvI	GCAGC	6 cut(s)	332, 427, 593, 736, 776, 995
BccI	CCATC	4 cut(s)	452, 494, 620, 843
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	252, 812
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	924
BisI	GCNGC	8 cut(s)	346, 441, 530, 582, 735, 750, 765, 1009
BlsI	GCNGC	8 cut(s)	347, 442, 531, 583, 736, 751, 766, 1010
Bme18I	GGWCC	2 cut(s)	410, 629
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	410, 629
BmiI	GGNNCC	1 cut(s)	903
BmsI	GCATC	2 cut(s)	427, 721
Bsa29I	ATCGAT	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	632
BsaWI	WCCGGW	2 cut(s)	407, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	2 cut(s)	427, 961
Bse1I	ACTGG	2 cut(s)	691, 821
Bse3DI	GCAATG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	632
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	691, 821
BseXI	GCAGC	6 cut(s)	332, 427, 593, 736, 776, 995
Bsh1236I	CGCG	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	901
BshTI	ACCGGT	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	726
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	3 cut(s)	408, 428, 962
BslFI	GGGAC	2 cut(s)	374, 650
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	252, 812
BsmFI	GGGAC	2 cut(s)	374, 650
BsmI	GAATGC	1 cut(s)	1037
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp1407I	TGTACA	1 cut(s)	1095
Bsp143I	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
Bsp19I	CCATGG	1 cut(s)	632
BspACI	CCGC	5 cut(s)	530, 734, 857, 1011, 1035
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	903
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	2 cut(s)	72, 772
BspT107I	GGYRCC	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	148
BsrFI	RCCGGY	2 cut(s)	427, 961
BsrGI	TGTACA	1 cut(s)	1095
BsrI	ACTGG	2 cut(s)	691, 821
BssAI	RCCGGY	2 cut(s)	427, 961
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
BssT1I	CCWWGG	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	674, 958
BstAPI	GCANNNNNTGC	1 cut(s)	1032
BstAUI	TGTACA	1 cut(s)	1095
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	3 cut(s)	83, 542, 738
BstDSI	CCRYGG	1 cut(s)	632
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	6 cut(s)	49, 67, 268, 310, 780, 899
BstMAI	GTCTC	2 cut(s)	252, 812
BstMBI	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
BstMWI	GCNNNNNNNGC	7 cut(s)	755, 764, 847, 856, 975, 1032, 1062
BstNSI	RCATGY	2 cut(s)	1026, 1056
BstSFI	CTRYAG	1 cut(s)	924
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	6 cut(s)	332, 427, 593, 736, 776, 995
BstX2I	RGATCY	1 cut(s)	777
BstYI	RGATCY	1 cut(s)	777
Bsu15I	ATCGAT	1 cut(s)	227
BsuTUI	ATCGAT	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	828, 963
Cac8I	GCNNGC	1 cut(s)	586
CaiI	CAGNNNCTG	1 cut(s)	923
CfoI	GCGC	1 cut(s)	828
Cfr10I	RCCGGY	2 cut(s)	427, 961
Cfr13I	GGNCC	2 cut(s)	410, 629
ClaI	ATCGAT	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	240, 1096
CspAI	ACCGGT	1 cut(s)	427
CviAII	CATG	8 cut(s)	7, 185, 479, 633, 772, 997, 1023, 1053
CviQI	GTAC	2 cut(s)	240, 1096
DdeI	CTNAG	3 cut(s)	83, 542, 738
DpnI	GATC	6 cut(s)	48, 66, 267, 309, 779, 898
DpnII	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
Eco130I	CCWWGG	1 cut(s)	632
Eco47I	GGWCC	2 cut(s)	410, 629
Eco88I	CYCGRG	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	632
FaeI	CATG	8 cut(s)	10, 188, 482, 636, 775, 1000, 1026, 1056
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 252, 284
FaqI	GGGAC	2 cut(s)	374, 650
FatI	CATG	8 cut(s)	6, 184, 478, 632, 771, 996, 1022, 1052
FauI	CCCGC	1 cut(s)	864
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	538
Fnu4HI	GCNGC	8 cut(s)	346, 441, 530, 582, 735, 750, 765, 1009
Fsp4HI	GCNGC	8 cut(s)	346, 441, 530, 582, 735, 750, 765, 1009
FspBI	CTAG	1 cut(s)	119
FspI	TGCGCA	1 cut(s)	827
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	8 cut(s)	346, 441, 530, 582, 735, 750, 765, 1009
HapII	CCGG	3 cut(s)	408, 428, 962
HhaI	GCGC	1 cut(s)	828
Hin1II	CATG	8 cut(s)	10, 188, 482, 636, 775, 1000, 1026, 1056
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HincII	GTYRAC	1 cut(s)	539
HindII	GTYRAC	1 cut(s)	539
HinfI	GANTC	5 cut(s)	101, 115, 205, 942, 985
HpaII	CCGG	3 cut(s)	408, 428, 962
HphI	GGTGA	2 cut(s)	82, 662
Hpy166II	GTNNAC	5 cut(s)	150, 539, 548, 700, 1098
Hpy188I	TCNGA	4 cut(s)	84, 114, 721, 912
Hpy188III	TCNNGA	3 cut(s)	332, 521, 706
Hpy8I	GTNNAC	5 cut(s)	150, 539, 548, 700, 1098
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	42, 191, 736, 960
HpyCH4III	ACNGT	2 cut(s)	674, 958
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	5 cut(s)	425, 472, 926, 1026, 1065
HpyF10VI	GCNNNNNNNGC	7 cut(s)	755, 764, 847, 856, 975, 1032, 1062
HpyF3I	CTNAG	3 cut(s)	83, 542, 738
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	8 cut(s)	10, 188, 482, 636, 775, 1000, 1026, 1056
HspAI	GCGC	1 cut(s)	826
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
LmnI	GCTCC	1 cut(s)	952
Lsp1109I	GCAGC	6 cut(s)	332, 427, 593, 736, 776, 995
LweI	GCATC	2 cut(s)	427, 721
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	5 cut(s)	295, 508, 881, 935, 1013
MalI	GATC	6 cut(s)	48, 66, 267, 309, 779, 898
MboI	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
MboII	GAAGA	4 cut(s)	96, 272, 566, 721
MflI	RGATCY	1 cut(s)	777
MhlI	GDGCHC	1 cut(s)	726
MluCI	AATT	3 cut(s)	123, 650, 677
MlyI	GAGTC	1 cut(s)	936
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	4 cut(s)	427, 678, 739, 862
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	2 cut(s)	369, 803
MslI	CAYNNNNRTG	1 cut(s)	729
MspI	CCGG	3 cut(s)	408, 428, 962
Mva1269I	GAATGC	1 cut(s)	1037
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	7 cut(s)	755, 764, 847, 856, 975, 1032, 1062
NcoI	CCATGG	1 cut(s)	632
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
NlaIII	CATG	8 cut(s)	10, 188, 482, 636, 775, 1000, 1026, 1056
NlaIV	GGNNCC	1 cut(s)	903
NmuCI	GTSAC	4 cut(s)	508, 881, 935, 1013
NsbI	TGCGCA	1 cut(s)	827
NspI	RCATGY	2 cut(s)	1026, 1056
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	1037
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	4 cut(s)	101, 115, 205, 985
PflFI	GACNNNGTC	1 cut(s)	543
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	8 cut(s)	347, 442, 531, 583, 736, 751, 766, 1010
PleI	GAGTC	1 cut(s)	936
PpsI	GAGTC	1 cut(s)	936
PspN4I	GGNNCC	1 cut(s)	903
PspPI	GGNCC	2 cut(s)	410, 629
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	777
PsyI	GACNNNGTC	1 cut(s)	543
RsaI	GTAC	2 cut(s)	241, 1097
RsaNI	GTAC	2 cut(s)	240, 1096
RseI	CAYNNNNRTG	1 cut(s)	729
SalI	GTCGAC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	369, 803
SatI	GCNGC	8 cut(s)	346, 441, 530, 582, 735, 750, 765, 1009
Sau3AI	GATC	6 cut(s)	46, 64, 265, 307, 777, 896
Sau96I	GGNCC	2 cut(s)	410, 629
SchI	GAGTC	1 cut(s)	936
SduI	GDGCHC	1 cut(s)	726
SfaNI	GCATC	2 cut(s)	427, 721
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	2 cut(s)	410, 629
SmiMI	CAYNNNNRTG	1 cut(s)	729
Sse9I	AATT	3 cut(s)	123, 650, 677
SsiI	CCGC	5 cut(s)	530, 734, 857, 1011, 1035
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	2 cut(s)	674, 958
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	6 cut(s)	227, 538, 572, 602, 654, 681
TasI	AATT	3 cut(s)	123, 650, 677
TatI	WGTACW	1 cut(s)	1095
TauI	GCSGC	2 cut(s)	532, 737
TfiI	GAWTC	4 cut(s)	101, 115, 205, 985
Tru1I	TTAA	2 cut(s)	369, 803
Tru9I	TTAA	2 cut(s)	369, 803
TscAI	CASTG	2 cut(s)	828, 963
TseFI	GTSAC	4 cut(s)	508, 881, 935, 1013
TseI	GCWGC	6 cut(s)	345, 440, 581, 749, 764, 1008
Tsp45I	GTSAC	4 cut(s)	508, 881, 935, 1013
TspDTI	ATGAA	6 cut(s)	17, 153, 173, 273, 581, 659
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	828, 963
Tth111I	GACNNNGTC	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	410, 629
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	2 cut(s)	1026, 1056
XmiI	GTMKAC	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.