Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005125

Physical Location & Seq

Genomic Coordinates Reverse (-)

35202948 .. 35210163

Gene Structure 7216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGGAATGGCGAATCGACATATGATGATTCTCATGATAATTTATCGATGTATGATGATGATTCTCGTGATAGTTTCCCACCTGAACCACCTTCCTATGCAGGCACTTCGATGGACTCTAGTTCTAAACAAAAGCTACCATCTACACGTATAGGCGACAATTTCAACTCTTTGGATCAGGTTATTGCTTCATTGAGGGAAGCTGGCCTTGAATCATCAAATTTAATACTTGGTATCGACTTCACAAAGAGCAATGAATGGACAGGCAAATATTCATTCAACAGAAAAAGTCTTCATGCTATTGGTAGCACACCTAATCCTTACGAGCAAGCAATCTCTATAATTGGCCGCACTTTGTCTCCTTTCGATGAAGATAATATAATTCCTTGTTTTGGATTTGGCGATGCATCAACACATGATCAAGGTGTGTTCCGCTTTTATCCTGATGATCGATGCTGTGTTGGGTTCGAGGAAGCTCTTGCTCGGTATAGGGAGATTGTTCCATACTTAAGGTTATCAGGTCCAACCTCGTTTTCCCCAATAATTGATGCGGCAATTGACATTGTTGAAAAAAACAATGGACAATACCATGTTCTTGTTATTATAGCAGACGGACAGGTTACCAGAAGCCCTGACACTCCGCCTGGAAGATTCAGTGCCCAAGAACAAGCAACTGTAAATTCCGTAGTTGCTGCTAGCAAATATCCTCTGTCAATTATCTTGGTTGGAGTTGGGGACGGACCGTGGGATGCAATGCAGCAATTTGATGATAACATTCCTCAACGAGCATTTGACAACTTCCAGTTTGTCAACTTCACCAAGATCATGTCAGACAACAGGGATATATCACAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCATATCAGTACAGAGCCACCCAAAGGCTTCAACTTTCCAGTTATGAATCAGAAGGTGGTCCACGTACAAGGCCACTTCCACCTCCACGCGATGTGATCAATCATGATAATGCAGTTAAATCAATCCCACCAATGACAAGCATTCCGAAAGTCGAGGCATCAGCTCCCGTGCTGCCAGAAGCTCCTGTGGAGTCGGTATTTCTTTCTCCCTCTCCCCCTTGTTTCGACTATTATTTTTATATGAAATTCCTTTCCAGTGATCTTTTGGTTGAGACAAGTTTCTCATGTTGTTCAAGGTGTGCCCCATTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

401

Amino Acids

44.31

Weight (kDa)

4.61

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	97 - 308	1.1e-71	Copine

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63970 AT5G63970
fragaria_vesca	FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670
malus_domestica	MD16G1282700.v1.1
prunus_persica	Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122151
rosa_laevigata	RLG00000018654
rosa_multiflora	Rmu_sc0000805.1_g000043 Rmu_sc0004574.1_g000050
rosa_roxburghii	Rroxscaffold_2G00121990
rosa_rugosa	Rorug02G0236600
rosa_samantha	Rh2AG293400 Rh2BG303800 Rh2CG282100 Rh2DG317300
rosa_wichuraiana	Rw2G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	981
AciI	CCGC	4 cut(s)	349, 433, 551, 641
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	4 cut(s)	220, 679, 888, 1136
AfaI	GTAC	2 cut(s)	902, 958
AfiI	CCNNNNNNNGG	2 cut(s)	392, 915
AflII	CTTAAG	1 cut(s)	508
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	6 cut(s)	166, 212, 280, 569, 923, 1185
AjnI	CCWGG	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	2 cut(s)	517, 549
AluBI	AGCT	5 cut(s)	136, 203, 476, 1055, 1073
AluI	AGCT	5 cut(s)	136, 203, 476, 1055, 1073
Alw26I	GTCTC	2 cut(s)	363, 1157
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	3 cut(s)	205, 346, 962
ApeKI	GCWGC	5 cut(s)	692, 757, 860, 875, 1063
ApoI	RAATTY	4 cut(s)	220, 679, 888, 1136
AspS9I	GGNCC	3 cut(s)	521, 740, 950
AsuHPI	GGTGA	1 cut(s)	808
AsuNHI	GCTAGC	1 cut(s)	695
AvaII	GGWCC	3 cut(s)	521, 740, 950
BaeGI	GKGCMC	2 cut(s)	661, 1195
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	5 cut(s)	679, 769, 862, 872, 1050
BccI	CCATC	2 cut(s)	106, 148
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciT130I	CCWGG	1 cut(s)	645
BclI	TGATCA	2 cut(s)	418, 987
BcoDI	GTCTC	2 cut(s)	363, 1157
BfaI	CTAG	2 cut(s)	120, 696
BfrI	CTTAAG	1 cut(s)	508
BisI	GCNGC	7 cut(s)	349, 552, 693, 758, 861, 876, 1064
BlsI	GCNGC	7 cut(s)	350, 553, 694, 759, 862, 877, 1065
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	3 cut(s)	521, 740, 950
BmgT120I	GGNCC	3 cut(s)	521, 740, 950
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	6 cut(s)	394, 416, 443, 538, 739, 1058
BmtI	GCTAGC	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	284
Bsa29I	ATCGAT	2 cut(s)	47, 451
BsaAI	YACGTR	2 cut(s)	149, 956
BsaJI	CCNNGG	1 cut(s)	743
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 915
Bse1I	ACTGG	3 cut(s)	802, 930, 1146
Bse3DI	GCAATG	2 cut(s)	259, 759
BseBI	CCWGG	1 cut(s)	645
BseCI	ATCGAT	2 cut(s)	47, 451
BseDI	CCNNGG	1 cut(s)	743
BseGI	GGATG	1 cut(s)	754
BseLI	CCNNNNNNNGG	2 cut(s)	392, 915
BseMI	GCAATG	2 cut(s)	259, 759
BseNI	ACTGG	3 cut(s)	802, 930, 1146
BseSI	GKGCMC	2 cut(s)	661, 1195
BseXI	GCAGC	5 cut(s)	679, 769, 862, 872, 1050
Bsh1236I	CGCG	1 cut(s)	981
BshFI	GGCC	3 cut(s)	207, 348, 964
BshVI	ATCGAT	2 cut(s)	47, 451
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	2 cut(s)	392, 915
BsmAI	GTCTC	2 cut(s)	363, 1157
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	1032
BsnI	GGCC	3 cut(s)	207, 348, 964
Bsp1286I	GDGCHC	2 cut(s)	661, 1195
Bsp143I	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
BspACI	CCGC	4 cut(s)	349, 433, 551, 641
BspANI	GGCC	3 cut(s)	207, 348, 964
BspDI	ATCGAT	2 cut(s)	47, 451
BspFNI	CGCG	1 cut(s)	981
BspHI	TCATGA	2 cut(s)	34, 994
BspOI	GCTAGC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	508
BsrDI	GCAATG	2 cut(s)	259, 759
BsrI	ACTGG	3 cut(s)	802, 930, 1146
BssECI	CCNNGG	1 cut(s)	743
BssMI	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	676, 744
BstAFI	CTTAAG	1 cut(s)	508
BstAPI	GCANNNNNTGC	2 cut(s)	866, 875
BstBAI	YACGTR	2 cut(s)	149, 956
BstC8I	GCNNGC	4 cut(s)	103, 205, 330, 697
BstDSI	CCRYGG	1 cut(s)	743
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	1 cut(s)	754
BstFNI	CGCG	1 cut(s)	981
BstKTI	GATC	6 cut(s)	178, 421, 451, 825, 990, 1153
BstMAI	GTCTC	2 cut(s)	363, 1157
BstMBI	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
BstMWI	GCNNNNNNNGC	3 cut(s)	866, 875, 1199
BstNI	CCWGG	1 cut(s)	645
BstPI	GGTNACC	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	643
BstSLI	GKGCMC	2 cut(s)	661, 1195
BstUI	CGCG	1 cut(s)	981
BstV1I	GCAGC	5 cut(s)	679, 769, 862, 872, 1050
BstV2I	GAAGAC	1 cut(s)	284
Bsu15I	ATCGAT	2 cut(s)	47, 451
BsuRI	GGCC	3 cut(s)	207, 348, 964
BsuTUI	ATCGAT	2 cut(s)	47, 451
BtgI	CCRYGG	1 cut(s)	743
BtgZI	GCGATG	2 cut(s)	417, 996
BtsCI	GGATG	1 cut(s)	754
BtsIMutI	CAGTG	2 cut(s)	661, 1153
Cac8I	GCNNGC	4 cut(s)	103, 205, 330, 697
CciI	TCATGA	2 cut(s)	34, 994
Cfr13I	GGNCC	3 cut(s)	521, 740, 950
ClaI	ATCGAT	2 cut(s)	47, 451
CpoI	CGGWCCG	1 cut(s)	740
Csp6I	GTAC	2 cut(s)	901, 957
CspI	CGGWCCG	1 cut(s)	740
CviAII	CATG	7 cut(s)	35, 296, 416, 590, 826, 995, 1176
CviQI	GTAC	2 cut(s)	901, 957
DpnI	GATC	6 cut(s)	177, 420, 450, 824, 989, 1152
DpnII	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
EaeI	YGGCCR	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	630
Eco47I	GGWCC	3 cut(s)	521, 740, 950
Eco91I	GGTNACC	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	643
EcoT22I	ATGCAT	1 cut(s)	409
FaeI	CATG	7 cut(s)	38, 299, 419, 593, 829, 998, 1179
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	7 cut(s)	34, 295, 415, 589, 825, 994, 1175
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	2 cut(s)	418, 987
Fnu4HI	GCNGC	7 cut(s)	349, 552, 693, 758, 861, 876, 1064
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	7 cut(s)	349, 552, 693, 758, 861, 876, 1064
FspBI	CTAG	2 cut(s)	120, 696
GluI	GCNGC	7 cut(s)	349, 552, 693, 758, 861, 876, 1064
HaeIII	GGCC	3 cut(s)	207, 348, 964
Hin1II	CATG	7 cut(s)	38, 299, 419, 593, 829, 998, 1179
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	8 cut(s)	14, 29, 62, 116, 212, 651, 938, 1082
HphI	GGTGA	1 cut(s)	808
Hpy166II	GTNNAC	2 cut(s)	811, 953
Hpy188I	TCNGA	3 cut(s)	832, 943, 1038
Hpy188III	TCNNGA	4 cut(s)	35, 68, 443, 995
Hpy8I	GTNNAC	2 cut(s)	811, 953
HpyAV	CCTTC	3 cut(s)	102, 847, 938
HpyCH4III	ACNGT	2 cut(s)	676, 744
HpyCH4IV	ACGT	2 cut(s)	148, 955
HpyCH4V	TGCA	6 cut(s)	101, 407, 752, 757, 869, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	866, 875, 1199
HpySE526I	ACGT	2 cut(s)	148, 955
Hsp92II	CATG	7 cut(s)	38, 299, 419, 593, 829, 998, 1179
Ksp22I	TGATCA	2 cut(s)	418, 987
Kzo9I	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
LmnI	GCTCC	2 cut(s)	1060, 1078
Lsp1109I	GCAGC	5 cut(s)	679, 769, 862, 872, 1050
LweI	GCATC	6 cut(s)	394, 416, 443, 538, 739, 1058
MaeI	CTAG	2 cut(s)	120, 696
MaeII	ACGT	2 cut(s)	148, 955
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	6 cut(s)	177, 420, 450, 824, 989, 1152
MboI	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
MboII	GAAGA	3 cut(s)	284, 383, 660
MfeI	CAATTG	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	661, 1195
MlyI	GAGTC	2 cut(s)	110, 1091
MmeI	TCCRAC	2 cut(s)	548, 706
MnlI	CCTC	8 cut(s)	189, 463, 538, 717, 789, 984, 1039, 1111
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	3 cut(s)	224, 509, 1008
MslI	CAYNNNNRTG	2 cut(s)	110, 999
MspCI	CTTAAG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	1032
MvaI	CCWGG	1 cut(s)	645
MvnI	CGCG	1 cut(s)	981
MwoI	GCNNNNNNNGC	3 cut(s)	866, 875, 1199
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
NheI	GCTAGC	1 cut(s)	695
NlaIII	CATG	7 cut(s)	38, 299, 419, 593, 829, 998, 1179
NsiI	ATGCAT	1 cut(s)	409
PagI	TCATGA	2 cut(s)	34, 994
PctI	GAATGC	1 cut(s)	1032
PfeI	GAWTC	6 cut(s)	14, 29, 62, 212, 651, 938
PkrI	GCNGC	7 cut(s)	350, 553, 694, 759, 862, 877, 1065
PleI	GAGTC	2 cut(s)	110, 1090
PpsI	GAGTC	2 cut(s)	110, 1090
Ppu21I	YACGTR	2 cut(s)	149, 956
Psp6I	CCWGG	1 cut(s)	643
PspEI	GGTNACC	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	643
PspPI	GGNCC	3 cut(s)	521, 740, 950
RsaI	GTAC	2 cut(s)	902, 958
RsaNI	GTAC	2 cut(s)	901, 957
RseI	CAYNNNNRTG	2 cut(s)	110, 999
Rsr2I	CGGWCCG	1 cut(s)	740
RsrII	CGGWCCG	1 cut(s)	740
SaqAI	TTAA	3 cut(s)	224, 509, 1008
SatI	GCNGC	7 cut(s)	349, 552, 693, 758, 861, 876, 1064
Sau3AI	GATC	6 cut(s)	175, 418, 448, 822, 987, 1150
Sau96I	GGNCC	3 cut(s)	521, 740, 950
SchI	GAGTC	2 cut(s)	110, 1091
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	661, 1195
SfaNI	GCATC	6 cut(s)	394, 416, 443, 538, 739, 1058
SinI	GGWCC	3 cut(s)	521, 740, 950
SmiMI	CAYNNNNRTG	2 cut(s)	110, 999
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
SsiI	CCGC	4 cut(s)	349, 433, 551, 641
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	2 cut(s)	120, 696
StyD4I	CCNGG	1 cut(s)	643
TaaI	ACNGT	2 cut(s)	676, 744
TaiI	ACGT	2 cut(s)	151, 958
TaqI	TCGA	9 cut(s)	17, 47, 110, 237, 366, 451, 468, 1044, 1116
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	2 cut(s)	351, 554
TfiI	GAWTC	6 cut(s)	14, 29, 62, 212, 651, 938
Tru1I	TTAA	3 cut(s)	224, 509, 1008
Tru9I	TTAA	3 cut(s)	224, 509, 1008
TscAI	CASTG	2 cut(s)	661, 1153
TseI	GCWGC	5 cut(s)	692, 757, 860, 875, 1063
TspDTI	ATGAA	7 cut(s)	180, 264, 270, 284, 384, 951, 1148
TspGWI	ACGGA	3 cut(s)	627, 673, 753
TspRI	CASTG	2 cut(s)	661, 1153
Vha464I	CTTAAG	1 cut(s)	508
VpaK11BI	GGWCC	3 cut(s)	521, 740, 950
XapI	RAATTY	4 cut(s)	220, 679, 888, 1136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1153
XspI	CTAG	2 cut(s)	120, 696
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.