Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005125

Physical Location & Seq

Genomic Coordinates Reverse (-)

16487573 .. 16494008

Gene Structure 6436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24670.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGACTCTAGTCATCAACAAAAGCTACCATTTACACGTATAGGCGATGATTTCAACTCGTTGGATCAGGTTATTGCTGCTTTGAGAGAAGCTGGCCTTGAATCATCCAATTTAATACTTGGTATCGACTTCACAAAGAGCAATGAATGGACAGGCAAATATTCATTCAACAGAAAAAGTCTTCATGCTATCGGTAGCACACCTAATCCTTACGAGCAAGCAATCTCTATAATCGGACGCACTTTATCTCCTTTCGATGAAGATAATATAATTCCTTGCTTTGGATTCGGCGATGCATCAACACATGATGTAGGTGTGTTCAGCTTTTATCCTGATGATCGATGCTGTGTTGGGTTTGAGGAAGCTCTTGCTCGGTATAGGGAGATTGTTCCATACTTAAGGTTATCAGGTCCAACCTCATTTGCCCCAATAATTGATGCGGCAATTGACATTGTTGAAAAGAGCAATGGACAATACCATGTTCTTGTCATTATAGCTGACGGACAGGTTACCAGGAGCCCTGATACTCCACCCGGAAGATTCAGTACCCAAGAACAAGCGACTGTAAATTCCATAGTTGCTGCTAGCAAATATCCTCTGTCAATCATCTTGGTTGGAGTTGGGGATGGACCGTGGGATGCAATGCAGAAATTTGATGATAACATTCCGCAGCGAGCATTTGACAACTTCCAGTTTGTCAACTTCACCAAGATCATGTCAGACAACAGGGATTTATCACAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCATCTCAGTACAGAGCCACCCAAAGGCTTCATTTTTCCAGTTATGAATCGGAAGGTGGTCCACGTACAAGGCCACTTCCACCTCCACGCGATGTGATCAATCACGATAATGCAGTTAAATCAATTCCACCAATGACAAGCTTTCCGAAAGTTGAGCCATCAGCTCCCGGCCTGCCAGTAGCTCCTGTGGAATCGGTGTGCCCAATTTGCCTGACAAATCCTAAGGACATGGCTTTCCAATGTGGTCATACGACCTGCAAGGATTGTGGAGTTAGTCTTTCATCATGCCCTCTGTGTCGACAACCCATATCAACACGCCTGAGACTCTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

372

Amino Acids

40.82

Weight (kDa)

5.32

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	86 - 296	3.7e-72	Copine

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63970 AT5G63970
fragaria_vesca	FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670
malus_domestica	MD16G1282700.v1.1
prunus_persica	Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122151
rosa_laevigata	RLG00000018654
rosa_multiflora	Rmu_sc0000805.1_g000043 Rmu_sc0004574.1_g000050
rosa_roxburghii	Rroxscaffold_2G00121990
rosa_rugosa	Rorug02G0236600
rosa_samantha	Rh2AG293400 Rh2BG303800 Rh2CG282100 Rh2DG317300
rosa_wichuraiana	Rw2G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1043
AccI	GTMKAC	1 cut(s)	1078
AccII	CGCG	1 cut(s)	870
AciI	CCGC	2 cut(s)	440, 668
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	568, 650, 777
AfaI	GTAC	3 cut(s)	547, 791, 847
AfiI	CCNNNNNNNGG	2 cut(s)	281, 804
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	55, 101, 169, 458
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	8 cut(s)	25, 92, 324, 365, 497, 921, 944, 962
AluI	AGCT	8 cut(s)	25, 92, 324, 365, 497, 921, 944, 962
Alw26I	GTCTC	1 cut(s)	1096
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	3 cut(s)	94, 851, 949
ApeKI	GCWGC	5 cut(s)	77, 581, 670, 749, 764
ApoI	RAATTY	3 cut(s)	568, 650, 777
AspS9I	GGNCC	3 cut(s)	410, 629, 839
AsuC2I	CCSGG	2 cut(s)	534, 948
AsuHPI	GGTGA	1 cut(s)	697
AsuNHI	GCTAGC	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	410, 629, 839
AxyI	CCTNAGG	1 cut(s)	1002
BaeGI	GKGCMC	1 cut(s)	983
BanII	GRGCYC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	5 cut(s)	64, 568, 682, 751, 761
BccI	CCATC	3 cut(s)	620, 790, 946
BciT130I	CCWGG	1 cut(s)	514
BclI	TGATCA	1 cut(s)	876
BcnI	CCSGG	2 cut(s)	534, 948
BcoDI	GTCTC	1 cut(s)	1096
BfaI	CTAG	2 cut(s)	9, 585
BfrI	CTTAAG	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	1043
BisI	GCNGC	6 cut(s)	78, 441, 582, 671, 750, 765
BlsI	GCNGC	6 cut(s)	79, 442, 583, 672, 751, 766
Bme1390I	CCNGG	3 cut(s)	514, 534, 948
Bme18I	GGWCC	3 cut(s)	410, 629, 839
BmgT120I	GGNCC	3 cut(s)	410, 629, 839
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	3 cut(s)	514, 534, 948
BmsI	GCATC	5 cut(s)	283, 305, 332, 427, 628
BmtI	GCTAGC	1 cut(s)	588
BoxI	GACNNNNGTC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	534, 948
Bsa29I	ATCGAT	1 cut(s)	340
BsaAI	YACGTR	2 cut(s)	38, 845
BsaJI	CCNNGG	1 cut(s)	632
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 804
Bse1I	ACTGG	3 cut(s)	691, 819, 956
Bse21I	CCTNAGG	1 cut(s)	1002
Bse3DI	GCAATG	3 cut(s)	148, 472, 648
BseBI	CCWGG	1 cut(s)	514
BseCI	ATCGAT	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	3 cut(s)	104, 631, 643
BseLI	CCNNNNNNNGG	2 cut(s)	281, 804
BseMI	GCAATG	3 cut(s)	148, 472, 648
BseMII	CTCAG	2 cut(s)	800, 1091
BseNI	ACTGG	3 cut(s)	691, 819, 956
BseSI	GKGCMC	1 cut(s)	983
BseXI	GCAGC	5 cut(s)	64, 568, 682, 751, 761
Bsh1236I	CGCG	1 cut(s)	870
BshFI	GGCC	3 cut(s)	96, 853, 951
BshVI	ATCGAT	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	534, 948
BslI	CCNNNNNNNGG	2 cut(s)	281, 804
BsmAI	GTCTC	1 cut(s)	1096
BsnI	GGCC	3 cut(s)	96, 853, 951
Bsp1286I	GDGCHC	2 cut(s)	521, 983
Bsp143I	GATC	4 cut(s)	64, 337, 711, 876
BspACI	CCGC	2 cut(s)	440, 668
BspANI	GGCC	3 cut(s)	96, 853, 951
BspCNI	CTCAG	2 cut(s)	799, 1092
BspDI	ATCGAT	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	870
BspLI	GGNNCC	1 cut(s)	518
BspMI	ACCTGC	1 cut(s)	1043
BspOI	GCTAGC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	72
BspTI	CTTAAG	1 cut(s)	397
BsrDI	GCAATG	3 cut(s)	148, 472, 648
BsrI	ACTGG	3 cut(s)	691, 819, 956
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	4 cut(s)	64, 337, 711, 876
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	2 cut(s)	565, 633
BstAFI	CTTAAG	1 cut(s)	397
BstAPI	GCANNNNNTGC	2 cut(s)	755, 764
BstBAI	YACGTR	2 cut(s)	38, 845
BstC8I	GCNNGC	5 cut(s)	94, 219, 586, 675, 953
BstDEI	CTNAG	3 cut(s)	786, 1002, 1100
BstDSI	CCRYGG	1 cut(s)	632
BstEII	GGTNACC	1 cut(s)	508
BstF5I	GGATG	3 cut(s)	104, 631, 643
BstFNI	CGCG	1 cut(s)	870
BstKTI	GATC	4 cut(s)	67, 340, 714, 879
BstMAI	GTCTC	1 cut(s)	1096
BstMBI	GATC	4 cut(s)	64, 337, 711, 876
BstMWI	GCNNNNNNNGC	3 cut(s)	755, 764, 987
BstNI	CCWGG	1 cut(s)	514
BstPAI	GACNNNNGTC	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	508
BstSCI	CCNGG	3 cut(s)	512, 532, 946
BstSLI	GKGCMC	1 cut(s)	983
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	5 cut(s)	64, 568, 682, 751, 761
BstV2I	GAAGAC	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	1002
BsuRI	GGCC	3 cut(s)	96, 853, 951
BsuTUI	ATCGAT	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	632
BtgZI	GCGATG	3 cut(s)	60, 306, 885
BtsCI	GGATG	3 cut(s)	104, 631, 643
BveI	ACCTGC	1 cut(s)	1043
Cac8I	GCNNGC	5 cut(s)	94, 219, 586, 675, 953
Cfr13I	GGNCC	3 cut(s)	410, 629, 839
ClaI	ATCGAT	1 cut(s)	340
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	546, 790, 846
CspCI	CAANNNNNGTGG	2 cut(s)	1027, 1062
CviAII	CATG	6 cut(s)	185, 305, 479, 715, 1009, 1065
CviQI	GTAC	3 cut(s)	546, 790, 846
DdeI	CTNAG	3 cut(s)	786, 1002, 1100
DpnI	GATC	4 cut(s)	66, 339, 713, 878
DpnII	GATC	4 cut(s)	64, 337, 711, 876
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	3 cut(s)	410, 629, 839
Eco81I	CCTNAGG	1 cut(s)	1002
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	6 cut(s)	188, 308, 482, 718, 1012, 1068
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	6 cut(s)	184, 304, 478, 714, 1008, 1064
FbaI	TGATCA	1 cut(s)	876
FblI	GTMKAC	1 cut(s)	1078
Fnu4HI	GCNGC	6 cut(s)	78, 441, 582, 671, 750, 765
FokI	GGATG	3 cut(s)	91, 638, 650
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	6 cut(s)	78, 441, 582, 671, 750, 765
FspBI	CTAG	2 cut(s)	9, 585
GluI	GCNGC	6 cut(s)	78, 441, 582, 671, 750, 765
HaeIII	GGCC	3 cut(s)	96, 853, 951
HapII	CCGG	2 cut(s)	534, 948
HgaI	GACGC	1 cut(s)	246
Hin1II	CATG	6 cut(s)	188, 308, 482, 718, 1012, 1068
HincII	GTYRAC	2 cut(s)	700, 1079
HindII	GTYRAC	2 cut(s)	700, 1079
HindIII	AAGCTT	1 cut(s)	919
HinfI	GANTC	7 cut(s)	5, 101, 285, 540, 827, 971, 1104
HpaII	CCGG	2 cut(s)	534, 948
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	3 cut(s)	700, 842, 1079
Hpy188I	TCNGA	4 cut(s)	236, 721, 832, 927
Hpy188III	TCNNGA	2 cut(s)	332, 884
Hpy8I	GTNNAC	3 cut(s)	700, 842, 1079
HpyAV	CCTTC	2 cut(s)	736, 827
HpyCH4III	ACNGT	2 cut(s)	565, 633
HpyCH4IV	ACGT	2 cut(s)	37, 844
HpyCH4V	TGCA	6 cut(s)	296, 641, 646, 758, 893, 1038
HpyF10VI	GCNNNNNNNGC	3 cut(s)	755, 764, 987
HpyF3I	CTNAG	3 cut(s)	786, 1002, 1100
HpySE526I	ACGT	2 cut(s)	37, 844
Hsp92II	CATG	6 cut(s)	188, 308, 482, 718, 1012, 1068
Ksp22I	TGATCA	1 cut(s)	876
Kzo9I	GATC	4 cut(s)	64, 337, 711, 876
LmnI	GCTCC	3 cut(s)	516, 949, 967
Lsp1109I	GCAGC	5 cut(s)	64, 568, 682, 751, 761
LweI	GCATC	5 cut(s)	283, 305, 332, 427, 628
MaeI	CTAG	2 cut(s)	9, 585
MaeII	ACGT	2 cut(s)	37, 844
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	4 cut(s)	66, 339, 713, 878
MboI	GATC	4 cut(s)	64, 337, 711, 876
MboII	GAAGA	3 cut(s)	173, 272, 549
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	521, 983
MluCI	AATT	9 cut(s)	109, 270, 432, 444, 568, 650, 777, 903, 984
MlyI	GAGTC	1 cut(s)	1098
MmeI	TCCRAC	3 cut(s)	42, 437, 595
MnlI	CCTC	5 cut(s)	352, 427, 606, 873, 1080
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	3 cut(s)	113, 398, 897
MslI	CAYNNNNRTG	1 cut(s)	888
MspCI	CTTAAG	1 cut(s)	397
MspI	CCGG	2 cut(s)	534, 948
MspR9I	CCNGG	3 cut(s)	514, 534, 948
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	3 cut(s)	755, 764, 987
NciI	CCSGG	2 cut(s)	534, 948
NdeII	GATC	4 cut(s)	64, 337, 711, 876
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	6 cut(s)	188, 308, 482, 718, 1012, 1068
NlaIV	GGNNCC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	298
PfeI	GAWTC	5 cut(s)	101, 285, 540, 827, 971
PkrI	GCNGC	6 cut(s)	79, 442, 583, 672, 751, 766
PleI	GAGTC	1 cut(s)	1098
PpsI	GAGTC	1 cut(s)	1098
Ppu21I	YACGTR	2 cut(s)	38, 845
PshAI	GACNNNNGTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	512
PspEI	GGTNACC	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	518
PspPI	GGNCC	3 cut(s)	410, 629, 839
RsaI	GTAC	3 cut(s)	547, 791, 847
RsaNI	GTAC	3 cut(s)	546, 790, 846
RseI	CAYNNNNRTG	1 cut(s)	888
SalI	GTCGAC	1 cut(s)	1077
SaqAI	TTAA	3 cut(s)	113, 398, 897
SatI	GCNGC	6 cut(s)	78, 441, 582, 671, 750, 765
Sau3AI	GATC	4 cut(s)	64, 337, 711, 876
Sau96I	GGNCC	3 cut(s)	410, 629, 839
SchI	GAGTC	1 cut(s)	1098
ScrFI	CCNGG	3 cut(s)	514, 534, 948
SduI	GDGCHC	2 cut(s)	521, 983
SfaNI	GCATC	5 cut(s)	283, 305, 332, 427, 628
SinI	GGWCC	3 cut(s)	410, 629, 839
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	9 cut(s)	109, 270, 432, 444, 568, 650, 777, 903, 984
SsiI	CCGC	2 cut(s)	440, 668
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	2 cut(s)	9, 585
StyD4I	CCNGG	3 cut(s)	512, 532, 946
TaaI	ACNGT	2 cut(s)	565, 633
TaiI	ACGT	2 cut(s)	40, 847
TaqI	TCGA	4 cut(s)	126, 255, 340, 1078
TasI	AATT	9 cut(s)	109, 270, 432, 444, 568, 650, 777, 903, 984
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	5 cut(s)	101, 285, 540, 827, 971
Tru1I	TTAA	3 cut(s)	113, 398, 897
Tru9I	TTAA	3 cut(s)	113, 398, 897
TseI	GCWGC	5 cut(s)	77, 581, 670, 749, 764
TspDTI	ATGAA	7 cut(s)	153, 159, 173, 273, 800, 840, 1050
TspGWI	ACGGA	1 cut(s)	516
Vha464I	CTTAAG	1 cut(s)	397
VpaK11BI	GGWCC	3 cut(s)	410, 629, 839
XapI	RAATTY	3 cut(s)	568, 650, 777
XmiI	GTMKAC	1 cut(s)	1078
XspI	CTAG	2 cut(s)	9, 585
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.