E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63970 AT5G63970 |
| fragaria_vesca | FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 |
| malus_domestica | MD16G1282700.v1.1 |
| prunus_persica | Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0122151 |
| rosa_laevigata | RLG00000018654 |
| rosa_multiflora | Rmu_sc0000805.1_g000043 Rmu_sc0004574.1_g000050 |
| rosa_roxburghii | Rroxscaffold_2G00121990 |
| rosa_rugosa | Rorug02G0236600 |
| rosa_samantha | Rh2AG293400 Rh2BG303800 Rh2CG282100 Rh2DG317300 |
| rosa_wichuraiana | Rw2G023520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 209 |
| AccB1I | GGYRCC | 1 cut(s) | 209 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 22 |
| AccII | CGCG | 1 cut(s) | 48 |
| AclWI | GGATC | 3 cut(s) | 79, 408, 1428 |
| AcoI | YGGCCR | 1 cut(s) | 571 |
| AcsI | RAATTY | 3 cut(s) | 445, 904, 1113 |
| AcvI | CACGTG | 1 cut(s) | 1205 |
| AfaI | GTAC | 3 cut(s) | 211, 1127, 1183 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 22, 229, 230, 617, 1140, 1453 |
| AflII | CTTAAG | 1 cut(s) | 733 |
| AflIII | ACRYGT | 2 cut(s) | 371, 1415 |
| AgsI | TTSAA | 8 cut(s) | 197, 391, 437, 505, 794, 1148, 1443, 1470 |
| AjnI | CCWGG | 2 cut(s) | 868, 1457 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 742, 774 |
| AluBI | AGCT | 6 cut(s) | 28, 361, 428, 701, 1280, 1298 |
| AluI | AGCT | 6 cut(s) | 28, 361, 428, 701, 1280, 1298 |
| Alw21I | GWGCWC | 1 cut(s) | 1401 |
| Alw26I | GTCTC | 1 cut(s) | 588 |
| AlwI | GGATC | 3 cut(s) | 79, 408, 1428 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 22 |
| AoxI | GGCC | 5 cut(s) | 430, 571, 1187, 1383, 1455 |
| ApeKI | GCWGC | 5 cut(s) | 917, 982, 1085, 1100, 1288 |
| ApoI | RAATTY | 3 cut(s) | 445, 904, 1113 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1334, 1366 |
| Asp718I | GGTACC | 1 cut(s) | 209 |
| AspLEI | GCGC | 1 cut(s) | 48 |
| AspS9I | GGNCC | 6 cut(s) | 746, 965, 1175, 1383, 1392, 1429 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 1033 |
| AsuNHI | GCTAGC | 1 cut(s) | 920 |
| AvaII | GGWCC | 5 cut(s) | 746, 965, 1175, 1392, 1429 |
| BaeGI | GKGCMC | 3 cut(s) | 121, 886, 1319 |
| BanI | GGYRCC | 1 cut(s) | 209 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 844, 876 |
| BbrPI | CACGTG | 1 cut(s) | 1205 |
| BbsI | GAAGAC | 1 cut(s) | 509 |
| Bbv12I | GWGCWC | 1 cut(s) | 1401 |
| BbvI | GCAGC | 5 cut(s) | 904, 994, 1087, 1097, 1275 |
| BccI | CCATC | 3 cut(s) | 221, 331, 373 |
| BceAI | ACGGC | 1 cut(s) | 1417 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 315, 349 |
| BciT130I | CCWGG | 2 cut(s) | 870, 1459 |
| BclI | TGATCA | 2 cut(s) | 643, 1212 |
| BcoDI | GTCTC | 1 cut(s) | 588 |
| BfaI | CTAG | 3 cut(s) | 345, 921, 1389 |
| BfrI | CTTAAG | 1 cut(s) | 733 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 111 |
| Bme1390I | CCNGG | 2 cut(s) | 870, 1459 |
| Bme18I | GGWCC | 5 cut(s) | 746, 965, 1175, 1392, 1429 |
| BmgT120I | GGNCC | 6 cut(s) | 746, 965, 1175, 1383, 1392, 1429 |
| BmiI | GGNNCC | 1 cut(s) | 211 |
| BmrFI | CCNGG | 2 cut(s) | 870, 1459 |
| BmsI | GCATC | 7 cut(s) | 24, 619, 641, 668, 763, 964, 1283 |
| BmtI | GCTAGC | 1 cut(s) | 924 |
| BpiI | GAAGAC | 1 cut(s) | 509 |
| BpmI | CTGGAG | 1 cut(s) | 44 |
| Bpu10I | CCTNAGC | 1 cut(s) | 94 |
| Bsa29I | ATCGAT | 1 cut(s) | 676 |
| BsaAI | YACGTR | 3 cut(s) | 374, 1181, 1205 |
| BsaBI | GATNNNNATC | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 2 cut(s) | 88, 968 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 568, 598, 1298, 1328 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 22, 229, 230, 617, 1140, 1453 |
| Bse1I | ACTGG | 2 cut(s) | 1027, 1155 |
| Bse3DI | GCAATG | 2 cut(s) | 484, 984 |
| Bse8I | GATNNNNATC | 1 cut(s) | 146 |
| BseBI | CCWGG | 2 cut(s) | 870, 1459 |
| BseCI | ATCGAT | 1 cut(s) | 676 |
| BseDI | CCNNGG | 2 cut(s) | 88, 968 |
| BseGI | GGATG | 2 cut(s) | 979, 1361 |
| BseJI | GATNNNNATC | 1 cut(s) | 146 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 22, 229, 230, 617, 1140, 1453 |
| BseMI | GCAATG | 2 cut(s) | 484, 984 |
| BseMII | CTCAG | 2 cut(s) | 108, 138 |
| BseNI | ACTGG | 2 cut(s) | 1027, 1155 |
| BseRI | GAGGAG | 1 cut(s) | 177 |
| BseSI | GKGCMC | 3 cut(s) | 121, 886, 1319 |
| BseXI | GCAGC | 5 cut(s) | 904, 994, 1087, 1097, 1275 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| Bsh1236I | CGCG | 1 cut(s) | 48 |
| BshFI | GGCC | 5 cut(s) | 432, 573, 1189, 1385, 1457 |
| BshNI | GGYRCC | 1 cut(s) | 209 |
| BshVI | ATCGAT | 1 cut(s) | 676 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1401 |
| BslFI | GGGAC | 1 cut(s) | 974 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 22, 229, 230, 617, 1140, 1453 |
| BsmAI | GTCTC | 1 cut(s) | 588 |
| BsmFI | GGGAC | 1 cut(s) | 974 |
| BsmI | GAATGC | 2 cut(s) | 1257, 1414 |
| BsnI | GGCC | 5 cut(s) | 432, 573, 1189, 1385, 1457 |
| Bsp1286I | GDGCHC | 4 cut(s) | 121, 886, 1319, 1401 |
| Bsp143I | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| BspANI | GGCC | 5 cut(s) | 432, 573, 1189, 1385, 1457 |
| BspCNI | CTCAG | 2 cut(s) | 107, 137 |
| BspDI | ATCGAT | 1 cut(s) | 676 |
| BspFNI | CGCG | 1 cut(s) | 48 |
| BspHI | TCATGA | 3 cut(s) | 262, 292, 1219 |
| BspLI | GGNNCC | 1 cut(s) | 211 |
| BspOI | GCTAGC | 1 cut(s) | 924 |
| BspPI | GGATC | 3 cut(s) | 79, 408, 1428 |
| BspT107I | GGYRCC | 1 cut(s) | 209 |
| BspTI | CTTAAG | 1 cut(s) | 733 |
| BsrDI | GCAATG | 2 cut(s) | 484, 984 |
| BsrI | ACTGG | 2 cut(s) | 1027, 1155 |
| BssECI | CCNNGG | 2 cut(s) | 88, 968 |
| BssMI | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| Bst2UI | CCWGG | 2 cut(s) | 870, 1459 |
| Bst4CI | ACNGT | 3 cut(s) | 901, 969, 1369 |
| BstAFI | CTTAAG | 1 cut(s) | 733 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1091, 1100 |
| BstBAI | YACGTR | 3 cut(s) | 374, 1181, 1205 |
| BstC8I | GCNNGC | 4 cut(s) | 328, 430, 555, 922 |
| BstDEI | CTNAG | 2 cut(s) | 94, 124 |
| BstDSI | CCRYGG | 1 cut(s) | 968 |
| BstEII | GGTNACC | 1 cut(s) | 844 |
| BstF5I | GGATG | 2 cut(s) | 979, 1361 |
| BstFNI | CGCG | 1 cut(s) | 48 |
| BstHHI | GCGC | 1 cut(s) | 48 |
| BstKTI | GATC | 9 cut(s) | 76, 87, 144, 403, 646, 676, 1050, 1215, 1436 |
| BstMAI | GTCTC | 1 cut(s) | 588 |
| BstMBI | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 25, 34, 43, 111, 1091, 1100, 1323 |
| BstNI | CCWGG | 2 cut(s) | 870, 1459 |
| BstPI | GGTNACC | 1 cut(s) | 844 |
| BstSCI | CCNGG | 2 cut(s) | 868, 1457 |
| BstSLI | GKGCMC | 3 cut(s) | 121, 886, 1319 |
| BstUI | CGCG | 1 cut(s) | 48 |
| BstV1I | GCAGC | 5 cut(s) | 904, 994, 1087, 1097, 1275 |
| BstV2I | GAAGAC | 1 cut(s) | 509 |
| Bsu15I | ATCGAT | 1 cut(s) | 676 |
| BsuRI | GGCC | 5 cut(s) | 432, 573, 1189, 1385, 1457 |
| BsuTUI | ATCGAT | 1 cut(s) | 676 |
| BtgI | CCRYGG | 1 cut(s) | 968 |
| BtgZI | GCGATG | 1 cut(s) | 642 |
| BtsCI | GGATG | 2 cut(s) | 979, 1361 |
| BtsIMutI | CAGTG | 1 cut(s) | 886 |
| Cac8I | GCNNGC | 4 cut(s) | 328, 430, 555, 922 |
| CaiI | CAGNNNCTG | 1 cut(s) | 22 |
| CciI | TCATGA | 3 cut(s) | 262, 292, 1219 |
| CfoI | GCGC | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 6 cut(s) | 746, 965, 1175, 1383, 1392, 1429 |
| ClaI | ATCGAT | 1 cut(s) | 676 |
| CpoI | CGGWCCG | 1 cut(s) | 965 |
| CseI | GACGC | 1 cut(s) | 8 |
| Csp6I | GTAC | 3 cut(s) | 210, 1126, 1182 |
| CspI | CGGWCCG | 1 cut(s) | 965 |
| CviAII | CATG | 9 cut(s) | 229, 263, 293, 521, 641, 815, 1051, 1220, 1345 |
| CviQI | GTAC | 3 cut(s) | 210, 1126, 1182 |
| DdeI | CTNAG | 2 cut(s) | 94, 124 |
| DpnI | GATC | 9 cut(s) | 75, 86, 143, 402, 645, 675, 1049, 1214, 1435 |
| DpnII | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| DraI | TTTAAA | 1 cut(s) | 1422 |
| EaeI | YGGCCR | 1 cut(s) | 571 |
| EciI | GGCGGA | 1 cut(s) | 855 |
| Eco47I | GGWCC | 5 cut(s) | 746, 965, 1175, 1392, 1429 |
| Eco72I | CACGTG | 1 cut(s) | 1205 |
| Eco91I | GGTNACC | 1 cut(s) | 844 |
| EcoO65I | GGTNACC | 1 cut(s) | 844 |
| EcoRII | CCWGG | 2 cut(s) | 868, 1457 |
| EcoT22I | ATGCAT | 1 cut(s) | 634 |
| FaeI | CATG | 9 cut(s) | 232, 266, 296, 524, 644, 818, 1054, 1223, 1348 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 417, 449 |
| FaqI | GGGAC | 1 cut(s) | 974 |
| FatI | CATG | 9 cut(s) | 228, 262, 292, 520, 640, 814, 1050, 1219, 1344 |
| FauI | CCCGC | 1 cut(s) | 44 |
| FbaI | TGATCA | 2 cut(s) | 643, 1212 |
| FokI | GGATG | 2 cut(s) | 986, 1368 |
| FspBI | CTAG | 3 cut(s) | 345, 921, 1389 |
| GlaI | GCGC | 1 cut(s) | 47 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 44 |
| HaeIII | GGCC | 5 cut(s) | 432, 573, 1189, 1385, 1457 |
| HgaI | GACGC | 1 cut(s) | 8 |
| HhaI | GCGC | 1 cut(s) | 48 |
| Hin1II | CATG | 9 cut(s) | 232, 266, 296, 524, 644, 818, 1054, 1223, 1348 |
| Hin6I | GCGC | 1 cut(s) | 46 |
| HinP1I | GCGC | 1 cut(s) | 46 |
| HincII | GTYRAC | 1 cut(s) | 1036 |
| HindII | GTYRAC | 1 cut(s) | 1036 |
| HindIII | AAGCTT | 1 cut(s) | 1296 |
| HinfI | GANTC | 9 cut(s) | 11, 242, 257, 287, 341, 437, 876, 1163, 1307 |
| HphI | GGTGA | 2 cut(s) | 83, 1033 |
| Hpy166II | GTNNAC | 2 cut(s) | 1036, 1178 |
| Hpy188I | TCNGA | 9 cut(s) | 33, 68, 89, 1057, 1168, 1263, 1355, 1396, 1433 |
| Hpy188III | TCNNGA | 5 cut(s) | 23, 263, 293, 668, 1220 |
| Hpy8I | GTNNAC | 2 cut(s) | 1036, 1178 |
| Hpy99I | CGWCG | 1 cut(s) | 250 |
| HpyAV | CCTTC | 3 cut(s) | 327, 1072, 1163 |
| HpyCH4III | ACNGT | 3 cut(s) | 901, 969, 1369 |
| HpyCH4IV | ACGT | 7 cut(s) | 248, 278, 373, 1180, 1204, 1417, 1475 |
| HpyCH4V | TGCA | 7 cut(s) | 326, 632, 977, 982, 1094, 1229, 1412 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 25, 34, 43, 111, 1091, 1100, 1323 |
| HpyF3I | CTNAG | 2 cut(s) | 94, 124 |
| HpySE526I | ACGT | 7 cut(s) | 248, 278, 373, 1180, 1204, 1417, 1475 |
| Hsp92II | CATG | 9 cut(s) | 232, 266, 296, 524, 644, 818, 1054, 1223, 1348 |
| HspAI | GCGC | 1 cut(s) | 46 |
| KpnI | GGTACC | 1 cut(s) | 213 |
| Ksp22I | TGATCA | 2 cut(s) | 643, 1212 |
| Kzo9I | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| LmnI | GCTCC | 2 cut(s) | 25, 1285 |
| Lsp1109I | GCAGC | 5 cut(s) | 904, 994, 1087, 1097, 1275 |
| LweI | GCATC | 7 cut(s) | 24, 619, 641, 668, 763, 964, 1283 |
| MaeI | CTAG | 3 cut(s) | 345, 921, 1389 |
| MaeII | ACGT | 7 cut(s) | 248, 278, 373, 1180, 1204, 1417, 1475 |
| MaeIII | GTNAC | 3 cut(s) | 128, 160, 844 |
| MalI | GATC | 9 cut(s) | 75, 86, 143, 402, 645, 675, 1049, 1214, 1435 |
| MboI | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| MboII | GAAGA | 3 cut(s) | 509, 608, 885 |
| MfeI | CAATTG | 1 cut(s) | 780 |
| MhlI | GDGCHC | 4 cut(s) | 121, 886, 1319, 1401 |
| MlyI | GAGTC | 2 cut(s) | 335, 1316 |
| MmeI | TCCRAC | 2 cut(s) | 773, 931 |
| Mph1103I | ATGCAT | 1 cut(s) | 634 |
| MseI | TTAA | 4 cut(s) | 449, 734, 1233, 1421 |
| MslI | CAYNNNNRTG | 2 cut(s) | 335, 1224 |
| MspCI | CTTAAG | 1 cut(s) | 733 |
| MspR9I | CCNGG | 2 cut(s) | 870, 1459 |
| MunI | CAATTG | 1 cut(s) | 780 |
| Mva1269I | GAATGC | 2 cut(s) | 1257, 1414 |
| MvaI | CCWGG | 2 cut(s) | 870, 1459 |
| MvnI | CGCG | 1 cut(s) | 48 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 25, 34, 43, 111, 1091, 1100, 1323 |
| NdeII | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| NheI | GCTAGC | 1 cut(s) | 920 |
| NlaIII | CATG | 9 cut(s) | 232, 266, 296, 524, 644, 818, 1054, 1223, 1348 |
| NlaIV | GGNNCC | 1 cut(s) | 211 |
| NmuCI | GTSAC | 1 cut(s) | 128 |
| NsiI | ATGCAT | 1 cut(s) | 634 |
| PagI | TCATGA | 3 cut(s) | 262, 292, 1219 |
| PctI | GAATGC | 2 cut(s) | 1257, 1414 |
| PfeI | GAWTC | 7 cut(s) | 11, 242, 257, 287, 437, 876, 1163 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 22 |
| PleI | GAGTC | 2 cut(s) | 335, 1315 |
| PmaCI | CACGTG | 1 cut(s) | 1205 |
| PmlI | CACGTG | 1 cut(s) | 1205 |
| PpsI | GAGTC | 2 cut(s) | 335, 1315 |
| Ppu21I | YACGTR | 3 cut(s) | 374, 1181, 1205 |
| Psp6I | CCWGG | 2 cut(s) | 868, 1457 |
| PspCI | CACGTG | 1 cut(s) | 1205 |
| PspEI | GGTNACC | 1 cut(s) | 844 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 2 cut(s) | 868, 1457 |
| PspN4I | GGNNCC | 1 cut(s) | 211 |
| PspPI | GGNCC | 6 cut(s) | 746, 965, 1175, 1383, 1392, 1429 |
| PstNI | CAGNNNCTG | 1 cut(s) | 22 |
| RsaI | GTAC | 3 cut(s) | 211, 1127, 1183 |
| RsaNI | GTAC | 3 cut(s) | 210, 1126, 1182 |
| RseI | CAYNNNNRTG | 2 cut(s) | 335, 1224 |
| Rsr2I | CGGWCCG | 1 cut(s) | 965 |
| RsrII | CGGWCCG | 1 cut(s) | 965 |
| SaqAI | TTAA | 4 cut(s) | 449, 734, 1233, 1421 |
| Sau3AI | GATC | 9 cut(s) | 73, 84, 141, 400, 643, 673, 1047, 1212, 1433 |
| Sau96I | GGNCC | 6 cut(s) | 746, 965, 1175, 1383, 1392, 1429 |
| SchI | GAGTC | 2 cut(s) | 335, 1316 |
| ScrFI | CCNGG | 2 cut(s) | 870, 1459 |
| SduI | GDGCHC | 4 cut(s) | 121, 886, 1319, 1401 |
| SfaNI | GCATC | 7 cut(s) | 24, 619, 641, 668, 763, 964, 1283 |
| SinI | GGWCC | 5 cut(s) | 746, 965, 1175, 1392, 1429 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 335, 1224 |
| SmlI | CTYRAG | 1 cut(s) | 733 |
| SmoI | CTYRAG | 1 cut(s) | 733 |
| SspI | AATATT | 2 cut(s) | 157, 497 |
| SspMI | CTAG | 3 cut(s) | 345, 921, 1389 |
| StyD4I | CCNGG | 2 cut(s) | 868, 1457 |
| TaaI | ACNGT | 3 cut(s) | 901, 969, 1369 |
| TaiI | ACGT | 7 cut(s) | 251, 281, 376, 1183, 1207, 1420, 1478 |
| TaqI | TCGA | 7 cut(s) | 245, 335, 462, 591, 676, 693, 1269 |
| TatI | WGTACW | 1 cut(s) | 1125 |
| TauI | GCSGC | 6 cut(s) | 51, 61, 576, 779, 1388, 1457 |
| TfiI | GAWTC | 7 cut(s) | 11, 242, 257, 287, 437, 876, 1163 |
| Tru1I | TTAA | 4 cut(s) | 449, 734, 1233, 1421 |
| Tru9I | TTAA | 4 cut(s) | 449, 734, 1233, 1421 |
| TscAI | CASTG | 1 cut(s) | 886 |
| TseFI | GTSAC | 1 cut(s) | 128 |
| TseI | GCWGC | 5 cut(s) | 917, 982, 1085, 1100, 1288 |
| Tsp45I | GTSAC | 1 cut(s) | 128 |
| TspDTI | ATGAA | 7 cut(s) | 171, 405, 489, 495, 509, 609, 1176 |
| TspGWI | ACGGA | 2 cut(s) | 852, 978 |
| TspRI | CASTG | 1 cut(s) | 886 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 22 |
| Vha464I | CTTAAG | 1 cut(s) | 733 |
| VpaK11BI | GGWCC | 5 cut(s) | 746, 965, 1175, 1392, 1429 |
| XapI | RAATTY | 3 cut(s) | 445, 904, 1113 |
| XspI | CTAG | 3 cut(s) | 345, 921, 1389 |
| Zsp2I | ATGCAT | 1 cut(s) | 634 |