Rmu_sc0000805.1_g000043

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000805.1
Physical Location & Seq
Forward (+)
119551 .. 128586
9036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000805.1_g000043.1.cds

Sequence Viewer

Length: 1485 bp
atgtgctttgattcccagcgtctggagcttctgatgctatcttggcgcggcgggtggcggctcgtcagaggtgatctgggggcgatccgaggctcaggcggtagcccgtctggctgtgccctctcaggtcactcttttgagatcaacatctccaatattgttacaacaatcaatcccctttcatctcctctgcttcaacatattacaggtaccatctacctcccaaacatggggaatggcgaatcgacgtataatgattctcatgataatttatggacgtatgatgattctcatgatagtttcccacctgaaccaccttcctatgcaggcacttcgatggactctagttctaaacaaaagctaccatctacacgtataggcgacaatttcaactctttggatcaggttattgcttcattgagggaagctggccttgaatcatcaaatttaatacttggtatcgacttcacaaagagcaatgaatggacaggcaaatattcattcaacagaaaaagtcttcatgctattggtagcacacctaatccttacgagcaagcaatctctataattggccgcactttgtctcctttcgatgaagataatataattccttgttttggatttggcgatgcatcaacacatgatcaaggtgtgttccgcttttatcctgatgatcgatgctgtgttgggttcgaggaagctcttgctcggtatagggagattgttccattcttaaggttatcaggtccaacctcgttttccccaataattgatgcggcaattgacattgttgaaaaaaacaatggacaataccatgttcttgttattatagcagacggacaggttaccagaagccctgatactccgcctggaagattcagtgcccaagaacaagcgactgtaaattccatagttgctgctagcaaatatcctctgtcaattatcttggttggagttggggacggaccgtgggatgcaatgcagcaatttgatgataacattcctcaacgagcatttgacaacttccagtttgtcaacttcaccaagatcatgtcagacaacagggatatatcacagaaggaagcagcatttgcacttgctgcccttatggaaattccatatcagtacagagccacccaaaggcttcaactttccagttatgaatcagaaggtggtccacgtacaaggccacttccacctccacgtgatgtgatcaatcatgataatgcagttaaatcaatcccaccaatgacaagcattccgaaagtcgaggcatcagctcccgtgctgccagaagcttctgtggagtcggtgtgccccatttgcctgacaaatccaaaggacatggctttcggatgtggtcatacggttggtggcaaaagggccgctaggtccgagcacggcacgaatgcaacacgtttaaaagtggtccgatcctattcaaccccgttggcggcctggaacaattcaagcacgttattctaa

Protein Analysis

494

Amino Acids

54.03

Weight (kDa)

5.35

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 22
AccII CGCG 1 cut(s) 48
AclWI GGATC 3 cut(s) 79, 408, 1428
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 3 cut(s) 445, 904, 1113
AcvI CACGTG 1 cut(s) 1205
AfaI GTAC 3 cut(s) 211, 1127, 1183
AfiI CCNNNNNNNGG 6 cut(s) 22, 229, 230, 617, 1140, 1453
AflII CTTAAG 1 cut(s) 733
AflIII ACRYGT 2 cut(s) 371, 1415
AgsI TTSAA 8 cut(s) 197, 391, 437, 505, 794, 1148, 1443, 1470
AjnI CCWGG 2 cut(s) 868, 1457
AjuI GAANNNNNNNTTGG 2 cut(s) 742, 774
AluBI AGCT 6 cut(s) 28, 361, 428, 701, 1280, 1298
AluI AGCT 6 cut(s) 28, 361, 428, 701, 1280, 1298
Alw21I GWGCWC 1 cut(s) 1401
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 3 cut(s) 79, 408, 1428
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 5 cut(s) 430, 571, 1187, 1383, 1455
ApeKI GCWGC 5 cut(s) 917, 982, 1085, 1100, 1288
ApoI RAATTY 3 cut(s) 445, 904, 1113
ArsI GACNNNNNNTTYG 2 cut(s) 1334, 1366
Asp718I GGTACC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 6 cut(s) 746, 965, 1175, 1383, 1392, 1429
AsuHPI GGTGA 2 cut(s) 83, 1033
AsuNHI GCTAGC 1 cut(s) 920
AvaII GGWCC 5 cut(s) 746, 965, 1175, 1392, 1429
BaeGI GKGCMC 3 cut(s) 121, 886, 1319
BanI GGYRCC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 844, 876
BbrPI CACGTG 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 1401
BbvI GCAGC 5 cut(s) 904, 994, 1087, 1097, 1275
BccI CCATC 3 cut(s) 221, 331, 373
BceAI ACGGC 1 cut(s) 1417
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 2 cut(s) 870, 1459
BclI TGATCA 2 cut(s) 643, 1212
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 3 cut(s) 345, 921, 1389
BfrI CTTAAG 1 cut(s) 733
BglI GCCNNNNNGGC 1 cut(s) 111
Bme1390I CCNGG 2 cut(s) 870, 1459
Bme18I GGWCC 5 cut(s) 746, 965, 1175, 1392, 1429
BmgT120I GGNCC 6 cut(s) 746, 965, 1175, 1383, 1392, 1429
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 870, 1459
BmsI GCATC 7 cut(s) 24, 619, 641, 668, 763, 964, 1283
BmtI GCTAGC 1 cut(s) 924
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 676
BsaAI YACGTR 3 cut(s) 374, 1181, 1205
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 88, 968
BsaXI ACNNNNNCTCC 4 cut(s) 568, 598, 1298, 1328
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 229, 230, 617, 1140, 1453
Bse1I ACTGG 2 cut(s) 1027, 1155
Bse3DI GCAATG 2 cut(s) 484, 984
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 2 cut(s) 870, 1459
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 2 cut(s) 88, 968
BseGI GGATG 2 cut(s) 979, 1361
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 6 cut(s) 22, 229, 230, 617, 1140, 1453
BseMI GCAATG 2 cut(s) 484, 984
BseMII CTCAG 2 cut(s) 108, 138
BseNI ACTGG 2 cut(s) 1027, 1155
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 3 cut(s) 121, 886, 1319
BseXI GCAGC 5 cut(s) 904, 994, 1087, 1097, 1275
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 5 cut(s) 432, 573, 1189, 1385, 1457
BshNI GGYRCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 1401
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 6 cut(s) 22, 229, 230, 617, 1140, 1453
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 974
BsmI GAATGC 2 cut(s) 1257, 1414
BsnI GGCC 5 cut(s) 432, 573, 1189, 1385, 1457
Bsp1286I GDGCHC 4 cut(s) 121, 886, 1319, 1401
Bsp143I GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
BspANI GGCC 5 cut(s) 432, 573, 1189, 1385, 1457
BspCNI CTCAG 2 cut(s) 107, 137
BspDI ATCGAT 1 cut(s) 676
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 3 cut(s) 262, 292, 1219
BspLI GGNNCC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 3 cut(s) 79, 408, 1428
BspT107I GGYRCC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 733
BsrDI GCAATG 2 cut(s) 484, 984
BsrI ACTGG 2 cut(s) 1027, 1155
BssECI CCNNGG 2 cut(s) 88, 968
BssMI GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
Bst2UI CCWGG 2 cut(s) 870, 1459
Bst4CI ACNGT 3 cut(s) 901, 969, 1369
BstAFI CTTAAG 1 cut(s) 733
BstAPI GCANNNNNTGC 2 cut(s) 1091, 1100
BstBAI YACGTR 3 cut(s) 374, 1181, 1205
BstC8I GCNNGC 4 cut(s) 328, 430, 555, 922
BstDEI CTNAG 2 cut(s) 94, 124
BstDSI CCRYGG 1 cut(s) 968
BstEII GGTNACC 1 cut(s) 844
BstF5I GGATG 2 cut(s) 979, 1361
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 9 cut(s) 76, 87, 144, 403, 646, 676, 1050, 1215, 1436
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
BstMWI GCNNNNNNNGC 7 cut(s) 25, 34, 43, 111, 1091, 1100, 1323
BstNI CCWGG 2 cut(s) 870, 1459
BstPI GGTNACC 1 cut(s) 844
BstSCI CCNGG 2 cut(s) 868, 1457
BstSLI GKGCMC 3 cut(s) 121, 886, 1319
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 5 cut(s) 904, 994, 1087, 1097, 1275
BstV2I GAAGAC 1 cut(s) 509
Bsu15I ATCGAT 1 cut(s) 676
BsuRI GGCC 5 cut(s) 432, 573, 1189, 1385, 1457
BsuTUI ATCGAT 1 cut(s) 676
BtgI CCRYGG 1 cut(s) 968
BtgZI GCGATG 1 cut(s) 642
BtsCI GGATG 2 cut(s) 979, 1361
BtsIMutI CAGTG 1 cut(s) 886
Cac8I GCNNGC 4 cut(s) 328, 430, 555, 922
CaiI CAGNNNCTG 1 cut(s) 22
CciI TCATGA 3 cut(s) 262, 292, 1219
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 6 cut(s) 746, 965, 1175, 1383, 1392, 1429
ClaI ATCGAT 1 cut(s) 676
CpoI CGGWCCG 1 cut(s) 965
CseI GACGC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 210, 1126, 1182
CspI CGGWCCG 1 cut(s) 965
CviAII CATG 9 cut(s) 229, 263, 293, 521, 641, 815, 1051, 1220, 1345
CviQI GTAC 3 cut(s) 210, 1126, 1182
DdeI CTNAG 2 cut(s) 94, 124
DpnI GATC 9 cut(s) 75, 86, 143, 402, 645, 675, 1049, 1214, 1435
DpnII GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
DraI TTTAAA 1 cut(s) 1422
EaeI YGGCCR 1 cut(s) 571
EciI GGCGGA 1 cut(s) 855
Eco47I GGWCC 5 cut(s) 746, 965, 1175, 1392, 1429
Eco72I CACGTG 1 cut(s) 1205
Eco91I GGTNACC 1 cut(s) 844
EcoO65I GGTNACC 1 cut(s) 844
EcoRII CCWGG 2 cut(s) 868, 1457
EcoT22I ATGCAT 1 cut(s) 634
FaeI CATG 9 cut(s) 232, 266, 296, 524, 644, 818, 1054, 1223, 1348
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 974
FatI CATG 9 cut(s) 228, 262, 292, 520, 640, 814, 1050, 1219, 1344
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 2 cut(s) 643, 1212
FokI GGATG 2 cut(s) 986, 1368
FspBI CTAG 3 cut(s) 345, 921, 1389
GlaI GCGC 1 cut(s) 47
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 5 cut(s) 432, 573, 1189, 1385, 1457
HgaI GACGC 1 cut(s) 8
HhaI GCGC 1 cut(s) 48
Hin1II CATG 9 cut(s) 232, 266, 296, 524, 644, 818, 1054, 1223, 1348
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 1036
HindII GTYRAC 1 cut(s) 1036
HindIII AAGCTT 1 cut(s) 1296
HinfI GANTC 9 cut(s) 11, 242, 257, 287, 341, 437, 876, 1163, 1307
HphI GGTGA 2 cut(s) 83, 1033
Hpy166II GTNNAC 2 cut(s) 1036, 1178
Hpy188I TCNGA 9 cut(s) 33, 68, 89, 1057, 1168, 1263, 1355, 1396, 1433
Hpy188III TCNNGA 5 cut(s) 23, 263, 293, 668, 1220
Hpy8I GTNNAC 2 cut(s) 1036, 1178
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 327, 1072, 1163
HpyCH4III ACNGT 3 cut(s) 901, 969, 1369
HpyCH4IV ACGT 7 cut(s) 248, 278, 373, 1180, 1204, 1417, 1475
HpyCH4V TGCA 7 cut(s) 326, 632, 977, 982, 1094, 1229, 1412
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 34, 43, 111, 1091, 1100, 1323
HpyF3I CTNAG 2 cut(s) 94, 124
HpySE526I ACGT 7 cut(s) 248, 278, 373, 1180, 1204, 1417, 1475
Hsp92II CATG 9 cut(s) 232, 266, 296, 524, 644, 818, 1054, 1223, 1348
HspAI GCGC 1 cut(s) 46
KpnI GGTACC 1 cut(s) 213
Ksp22I TGATCA 2 cut(s) 643, 1212
Kzo9I GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
LmnI GCTCC 2 cut(s) 25, 1285
Lsp1109I GCAGC 5 cut(s) 904, 994, 1087, 1097, 1275
LweI GCATC 7 cut(s) 24, 619, 641, 668, 763, 964, 1283
MaeI CTAG 3 cut(s) 345, 921, 1389
MaeII ACGT 7 cut(s) 248, 278, 373, 1180, 1204, 1417, 1475
MaeIII GTNAC 3 cut(s) 128, 160, 844
MalI GATC 9 cut(s) 75, 86, 143, 402, 645, 675, 1049, 1214, 1435
MboI GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
MboII GAAGA 3 cut(s) 509, 608, 885
MfeI CAATTG 1 cut(s) 780
MhlI GDGCHC 4 cut(s) 121, 886, 1319, 1401
MlyI GAGTC 2 cut(s) 335, 1316
MmeI TCCRAC 2 cut(s) 773, 931
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 4 cut(s) 449, 734, 1233, 1421
MslI CAYNNNNRTG 2 cut(s) 335, 1224
MspCI CTTAAG 1 cut(s) 733
MspR9I CCNGG 2 cut(s) 870, 1459
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 2 cut(s) 1257, 1414
MvaI CCWGG 2 cut(s) 870, 1459
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 7 cut(s) 25, 34, 43, 111, 1091, 1100, 1323
NdeII GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 9 cut(s) 232, 266, 296, 524, 644, 818, 1054, 1223, 1348
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 634
PagI TCATGA 3 cut(s) 262, 292, 1219
PctI GAATGC 2 cut(s) 1257, 1414
PfeI GAWTC 7 cut(s) 11, 242, 257, 287, 437, 876, 1163
PflMI CCANNNNNTGG 1 cut(s) 22
PleI GAGTC 2 cut(s) 335, 1315
PmaCI CACGTG 1 cut(s) 1205
PmlI CACGTG 1 cut(s) 1205
PpsI GAGTC 2 cut(s) 335, 1315
Ppu21I YACGTR 3 cut(s) 374, 1181, 1205
Psp6I CCWGG 2 cut(s) 868, 1457
PspCI CACGTG 1 cut(s) 1205
PspEI GGTNACC 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 868, 1457
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 6 cut(s) 746, 965, 1175, 1383, 1392, 1429
PstNI CAGNNNCTG 1 cut(s) 22
RsaI GTAC 3 cut(s) 211, 1127, 1183
RsaNI GTAC 3 cut(s) 210, 1126, 1182
RseI CAYNNNNRTG 2 cut(s) 335, 1224
Rsr2I CGGWCCG 1 cut(s) 965
RsrII CGGWCCG 1 cut(s) 965
SaqAI TTAA 4 cut(s) 449, 734, 1233, 1421
Sau3AI GATC 9 cut(s) 73, 84, 141, 400, 643, 673, 1047, 1212, 1433
Sau96I GGNCC 6 cut(s) 746, 965, 1175, 1383, 1392, 1429
SchI GAGTC 2 cut(s) 335, 1316
ScrFI CCNGG 2 cut(s) 870, 1459
SduI GDGCHC 4 cut(s) 121, 886, 1319, 1401
SfaNI GCATC 7 cut(s) 24, 619, 641, 668, 763, 964, 1283
SinI GGWCC 5 cut(s) 746, 965, 1175, 1392, 1429
SmiMI CAYNNNNRTG 2 cut(s) 335, 1224
SmlI CTYRAG 1 cut(s) 733
SmoI CTYRAG 1 cut(s) 733
SspI AATATT 2 cut(s) 157, 497
SspMI CTAG 3 cut(s) 345, 921, 1389
StyD4I CCNGG 2 cut(s) 868, 1457
TaaI ACNGT 3 cut(s) 901, 969, 1369
TaiI ACGT 7 cut(s) 251, 281, 376, 1183, 1207, 1420, 1478
TaqI TCGA 7 cut(s) 245, 335, 462, 591, 676, 693, 1269
TatI WGTACW 1 cut(s) 1125
TauI GCSGC 6 cut(s) 51, 61, 576, 779, 1388, 1457
TfiI GAWTC 7 cut(s) 11, 242, 257, 287, 437, 876, 1163
Tru1I TTAA 4 cut(s) 449, 734, 1233, 1421
Tru9I TTAA 4 cut(s) 449, 734, 1233, 1421
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 5 cut(s) 917, 982, 1085, 1100, 1288
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 7 cut(s) 171, 405, 489, 495, 509, 609, 1176
TspGWI ACGGA 2 cut(s) 852, 978
TspRI CASTG 1 cut(s) 886
Van91I CCANNNNNTGG 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 733
VpaK11BI GGWCC 5 cut(s) 746, 965, 1175, 1392, 1429
XapI RAATTY 3 cut(s) 445, 904, 1113
XspI CTAG 3 cut(s) 345, 921, 1389
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.