Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005125

Physical Location & Seq

Genomic Coordinates Forward (+)

22570950 .. 22576633

Gene Structure 5684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G273300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGGAATGGGGAATCTACATATACTGATGGTTCTTATGATGATTCTCTTCGTGAACTACCTTCCCATGCAGGGACTTCAATGGATTCTAATCATCAACCGAAGCGACAATCCGCATACATAGCCGACAATTTTAACTCTTTGGATCAGGTTATTTCATCATTGAGAGAAGCCGGCCTTGAATCATCAAATTTAATACTTGGTATTGACTTCACAAAGAGCAATGAATGGACAGGAAGATATTCATTCCATAGGAAAAGCCTTCATGCAATTGGTAGCACGCCTAATCCTTACGAGCAAGCAATCTCTATAATTGGCCGTACTTTGTCTCCTTTCGATGAAGATAATATAATACCTTGTTTTGGATTTGGTGATGCATCAACACATGATCAATGCGTGTTCAGTTTTTATCCTGAGGGCCGATATTGTCATGGTTTCGAGGAAGCTCTTGCACGATATAGGGAGATTGTTCCGTTATTAAAGTTATCAGGTCCTACCTCATTTGCCCCAATAATTGATGCGGCAATTGACATTGTTGAAAACAGCAATGGGCAATACCATGTTCTTGTCATTATTGCAGACGGACAGGTTACCAGGAGCCCTGATACTCCTCCTGGAAGATTCAGTCAGCAAGAACAAGCAACTGTAAATTCCATTGTTGCTGCTAGTCAATATCCTCTCTCAATTATCTTGGTTGGAGTTGGAGATGGACCATGGGATGCAATGCAGAAATTTGACGATAACATTCCTCAGCGCTCATTTGACAACTTCCAGTTTGTCAACTTCACCAAAATCATGTCAGAGAACACAGATACATCAAAGAAGGAAGCCGCCTTTGCACTTGCTGCCCTCATGGAAATTCCATATCAGTACAGAGCCACCCAAAGTCTTCATTTTGTCAATCGTGAACCAGTAGGTGGTCCTCGTACAAGGCCACTTCCACCTCCACGTGAAGTGATTAATCATGATAATGCAGTTAAATCAATCCCACAAATTACAAACGTGCAGAAAGTCGAGCCAACAGCTCCTGTAGCTCCTGTGGAACCTGTCTGTCCCATTTGCCTGACAAATCCAAAGGATATGGCTTTCGGATGTGGTCATACAACATGCAAGGATTGTGGGCTGAGTCTTCTTTCATGCCCTTTGTGTCGAGAACCCATATCAACACGCCTGAGACTATATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

396

Amino Acids

43.54

Weight (kDa)

5.23

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63970 AT5G63970
fragaria_vesca	FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670
malus_domestica	MD16G1282700.v1.1
prunus_persica	Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122151
rosa_laevigata	RLG00000018654
rosa_multiflora	Rmu_sc0000805.1_g000043 Rmu_sc0004574.1_g000050
rosa_roxburghii	Rroxscaffold_2G00121990
rosa_rugosa	Rorug02G0236600
rosa_samantha	Rh2AG293400 Rh2BG303800 Rh2CG282100 Rh2DG317300
rosa_wichuraiana	Rw2G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	917
AciI	CCGC	3 cut(s)	114, 521, 831
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	4 cut(s)	190, 649, 731, 858
AcvI	CACGTG	1 cut(s)	950
AfaI	GTAC	3 cut(s)	322, 872, 928
AfeI	AGCGCT	1 cut(s)	755
AfiI	CCNNNNNNNGG	3 cut(s)	72, 362, 917
AgsI	TTSAA	3 cut(s)	81, 182, 539
AjnI	CCWGG	2 cut(s)	593, 613
AluBI	AGCT	3 cut(s)	446, 1025, 1034
AluI	AGCT	3 cut(s)	446, 1025, 1034
Alw26I	GTCTC	2 cut(s)	333, 1168
AlwI	GGATC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	1028
Aor51HI	AGCGCT	1 cut(s)	755
AoxI	GGCC	4 cut(s)	175, 316, 418, 932
ApeKI	GCWGC	2 cut(s)	662, 845
ApoI	RAATTY	4 cut(s)	190, 649, 731, 858
AseI	ATTAAT	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	4 cut(s)	418, 491, 710, 920
AsuHPI	GGTGA	2 cut(s)	383, 778
AvaII	GGWCC	3 cut(s)	491, 710, 920
AxyI	CCTNAGG	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	602
BbrPI	CACGTG	1 cut(s)	950
BbsI	GAAGAC	2 cut(s)	881, 1121
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	2 cut(s)	649, 832
BccI	CCATC	2 cut(s)	23, 701
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	2 cut(s)	595, 615
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	333, 1168
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	1029
BfoI	RGCGCY	1 cut(s)	757
BisI	GCNGC	4 cut(s)	522, 663, 831, 846
BlsI	GCNGC	4 cut(s)	523, 664, 832, 847
Bme1390I	CCNGG	2 cut(s)	595, 615
Bme18I	GGWCC	3 cut(s)	491, 710, 920
BmgT120I	GGNCC	4 cut(s)	418, 491, 710, 920
BmiI	GGNNCC	2 cut(s)	599, 1044
BmrFI	CCNGG	2 cut(s)	595, 615
BmsI	GCATC	4 cut(s)	364, 386, 508, 709
BpiI	GAAGAC	2 cut(s)	881, 1121
Bpu10I	CCTNAGC	1 cut(s)	750
BsaAI	YACGTR	1 cut(s)	950
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	713
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 362, 917
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	772, 911
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	3 cut(s)	229, 553, 729
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	595, 615
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	2 cut(s)	724, 1097
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	72, 362, 917
BseMI	GCAATG	3 cut(s)	229, 553, 729
BseMII	CTCAG	4 cut(s)	405, 764, 1115, 1163
BseNI	ACTGG	2 cut(s)	772, 911
BseRI	GAGGAG	1 cut(s)	600
BseXI	GCAGC	2 cut(s)	649, 832
BsgI	GTGCAG	1 cut(s)	1025
BshFI	GGCC	4 cut(s)	177, 318, 420, 934
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	88, 1038
BslI	CCNNNNNNNGG	3 cut(s)	72, 362, 917
BsmAI	GTCTC	2 cut(s)	333, 1168
BsmFI	GGGAC	2 cut(s)	88, 1038
BsnI	GGCC	4 cut(s)	177, 318, 420, 934
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp143I	GATC	2 cut(s)	145, 388
Bsp19I	CCATGG	1 cut(s)	713
BspACI	CCGC	3 cut(s)	114, 521, 831
BspANI	GGCC	4 cut(s)	177, 318, 420, 934
BspCNI	CTCAG	4 cut(s)	406, 763, 1116, 1164
BspHI	TCATGA	1 cut(s)	964
BspLI	GGNNCC	2 cut(s)	599, 1044
BspPI	GGATC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	229, 553, 729
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	772, 911
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	2 cut(s)	145, 388
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	595, 615
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstBAI	YACGTR	1 cut(s)	950
BstC8I	GCNNGC	3 cut(s)	175, 281, 300
BstDEI	CTNAG	4 cut(s)	414, 750, 1124, 1172
BstDSI	CCRYGG	1 cut(s)	713
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	724, 1097
BstH2I	RGCGCY	1 cut(s)	757
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	2 cut(s)	148, 391
BstMAI	GTCTC	2 cut(s)	333, 1168
BstMBI	GATC	2 cut(s)	145, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 836, 845, 1031
BstNI	CCWGG	2 cut(s)	595, 615
BstNSI	RCATGY	1 cut(s)	1110
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	593, 613
BstSFI	CTRYAG	1 cut(s)	1029
BstV1I	GCAGC	2 cut(s)	649, 832
BstV2I	GAAGAC	2 cut(s)	881, 1121
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	177, 318, 420, 934
BtgI	CCRYGG	1 cut(s)	713
BtsCI	GGATG	2 cut(s)	724, 1097
Cac8I	GCNNGC	3 cut(s)	175, 281, 300
CaiI	CAGNNNCTG	1 cut(s)	1028
CciI	TCATGA	1 cut(s)	964
CfoI	GCGC	1 cut(s)	756
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	418, 491, 710, 920
Csp6I	GTAC	3 cut(s)	321, 871, 927
CspCI	CAANNNNNGTGG	2 cut(s)	1099, 1134
CviQI	GTAC	3 cut(s)	321, 871, 927
DdeI	CTNAG	4 cut(s)	414, 750, 1124, 1172
DpnI	GATC	2 cut(s)	147, 390
DpnII	GATC	2 cut(s)	145, 388
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	713
Eco24I	GRGCYC	1 cut(s)	602
Eco47I	GGWCC	3 cut(s)	491, 710, 920
Eco47III	AGCGCT	1 cut(s)	755
Eco72I	CACGTG	1 cut(s)	950
Eco81I	CCTNAGG	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	593, 613
EcoT14I	CCWWGG	1 cut(s)	713
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	713
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	2 cut(s)	88, 1038
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	522, 663, 831, 846
FokI	GGATG	2 cut(s)	731, 1104
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	4 cut(s)	522, 663, 831, 846
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	4 cut(s)	522, 663, 831, 846
HaeII	RGCGCY	1 cut(s)	757
HaeIII	GGCC	4 cut(s)	177, 318, 420, 934
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	756
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	6 cut(s)	14, 44, 86, 182, 621, 1126
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	383, 778
Hpy166II	GTNNAC	3 cut(s)	56, 781, 908
Hpy188I	TCNGA	2 cut(s)	802, 1091
Hpy188III	TCNNGA	5 cut(s)	53, 413, 905, 965, 1151
Hpy8I	GTNNAC	3 cut(s)	56, 781, 908
HpyAV	CCTTC	3 cut(s)	72, 272, 817
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	2 cut(s)	949, 1002
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 836, 845, 1031
HpyF3I	CTNAG	4 cut(s)	414, 750, 1124, 1172
HpySE526I	ACGT	2 cut(s)	949, 1002
HspAI	GCGC	1 cut(s)	754
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	145, 388
LmnI	GCTCC	3 cut(s)	597, 1030, 1039
Lsp1109I	GCAGC	2 cut(s)	649, 832
LweI	GCATC	4 cut(s)	364, 386, 508, 709
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	2 cut(s)	949, 1002
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	2 cut(s)	147, 390
MboI	GATC	2 cut(s)	145, 388
MboII	GAAGA	6 cut(s)	41, 249, 353, 630, 881, 1121
MfeI	CAATTG	2 cut(s)	270, 525
MhlI	GDGCHC	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	1135
MmeI	TCCRAC	2 cut(s)	676, 682
MnlI	CCTC	9 cut(s)	409, 433, 508, 621, 687, 759, 860, 933, 954
Mph1103I	ATGCAT	1 cut(s)	379
MroNI	GCCGGC	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	5 cut(s)	135, 194, 479, 960, 978
MslI	CAYNNNNRTG	1 cut(s)	969
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	595, 615
MunI	CAATTG	2 cut(s)	270, 525
MvaI	CCWGG	2 cut(s)	595, 615
MwoI	GCNNNNNNNGC	4 cut(s)	122, 836, 845, 1031
NaeI	GCCGGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	713
NdeII	GATC	2 cut(s)	145, 388
NgoMIV	GCCGGC	1 cut(s)	173
NlaIV	GGNNCC	2 cut(s)	599, 1044
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	1110
PagI	TCATGA	1 cut(s)	964
PdiI	GCCGGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	5 cut(s)	14, 44, 86, 182, 621
PflMI	CCANNNNNTGG	1 cut(s)	917
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	4 cut(s)	523, 664, 832, 847
PleI	GAGTC	1 cut(s)	1134
PmaCI	CACGTG	1 cut(s)	950
PmlI	CACGTG	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	1134
Ppu21I	YACGTR	1 cut(s)	950
PpuMI	RGGWCCY	1 cut(s)	491
PshBI	ATTAAT	1 cut(s)	960
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	593, 613
PspCI	CACGTG	1 cut(s)	950
PspEI	GGTNACC	1 cut(s)	589
PspGI	CCWGG	2 cut(s)	593, 613
PspN4I	GGNNCC	2 cut(s)	599, 1044
PspPI	GGNCC	4 cut(s)	418, 491, 710, 920
PspPPI	RGGWCCY	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	1028
RsaI	GTAC	3 cut(s)	322, 872, 928
RsaNI	GTAC	3 cut(s)	321, 871, 927
RseI	CAYNNNNRTG	1 cut(s)	969
SaqAI	TTAA	5 cut(s)	135, 194, 479, 960, 978
SatI	GCNGC	4 cut(s)	522, 663, 831, 846
Sau3AI	GATC	2 cut(s)	145, 388
Sau96I	GGNCC	4 cut(s)	418, 491, 710, 920
SchI	GAGTC	1 cut(s)	1135
ScrFI	CCNGG	2 cut(s)	595, 615
SduI	GDGCHC	1 cut(s)	602
SfaNI	GCATC	4 cut(s)	364, 386, 508, 709
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	3 cut(s)	491, 710, 920
SmiMI	CAYNNNNRTG	1 cut(s)	969
SsiI	CCGC	3 cut(s)	114, 521, 831
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	593, 613
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	2 cut(s)	952, 1005
TaqI	TCGA	4 cut(s)	336, 438, 1014, 1150
TatI	WGTACW	1 cut(s)	870
TauI	GCSGC	2 cut(s)	524, 833
TfiI	GAWTC	5 cut(s)	14, 44, 86, 182, 621
Tru1I	TTAA	5 cut(s)	135, 194, 479, 960, 978
Tru9I	TTAA	5 cut(s)	135, 194, 479, 960, 978
TseI	GCWGC	2 cut(s)	662, 845
TspDTI	ATGAA	7 cut(s)	147, 234, 240, 254, 354, 881, 1125
TspGWI	ACGGA	2 cut(s)	462, 597
Van91I	CCANNNNNTGG	1 cut(s)	917
VpaK11BI	GGWCC	3 cut(s)	491, 710, 920
VspI	ATTAAT	1 cut(s)	960
XapI	RAATTY	4 cut(s)	190, 649, 731, 858
XceI	RCATGY	1 cut(s)	1110
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	1 cut(s)	666
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.